Rorug04G0216000

Autophagy-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0010833
Physical Location & Seq
Forward (+)
37334977 .. 37335900
924 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0216000.1

Sequence Viewer

Length: 924 bp
ATGAAAGTTCTATACTGGAATGCTCGTGGTATAGCAAATGATGATACCCAACGGGCTCTAGGGAACATGGTTCGTTCACATCGTCCATTAATTGTTTGTTTATCTGAACCTTTTGTTTTAGTTGATTCTATTTCGTTTACATTCTGGAGATCACTGGGCCTGCGACTAGTTGCTACTAACGATCGAGGCTTGCAAGCTCCAAACCTCTGGATGTTTTGTTCTGAAGCCCTCCAGGTACAGGTCATTGAAGCTAAAGCTCAACACATAACAGTTTCCTTCATTCATGAGGGAGTCTCTAGTGTTCTCACTGCTGTTTATGCTAGCACCTCAATCATTGGTAGAAGGCAACTATGGCATGATTTAGCTGAAATTCGTTCTCGGCACGTTCATGGTCCTTGGGTAGTTCTGGGGGATTTCAATGCAGTTCTGGGTGCTCATGAAAAGAGGGGTGGTAATCCGCCAAATGCTACGTCTTGTCTTGATTTCATCCAAATGTGTTCATCTTGTGAGCTTCAGGACATTCCCACAAAGGGTATAGCTTTCACCTGGACTAATCGTATCACCGAAGTTAGATTGGACAGAGCTCTCGGCAATACTGAGTGGTTTGAGGCGTGGTCCTCCGTGGATTGTTGCACCCTCACTAGAGCCACCTCGGACCATTGCCCTATCCTCCTAACATTCTCAAAACTTCAGGCATTTTTCAAGCCACAGTTCAGATTTCAAAGCTTCTGGTTACAACACCCAGACTTCTCCACTACAGTAAAACTATTTTGGGAGCCTTTGCAGTTCTATGGCTGCCCTCAATTCATTCTAATGTCAAAGCTCAGATGCCTAAAGTTCATGCTCAGGGCCTGGAATAGAGATCATGTGGGAAATATTAATGCACGGGTTTCCCGCTCTAAGGCCTCACTGGATGCTATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04068 ko04136 ko04137 ko04138 ko04139 ko04140 ko04212 ko04371 ko04621 ko04727 ko05167 map04068 map04136 map04137 map04138 map04139 map04140 map04212 map04371 map04621 map04727 map05167
Pfam Domains
Protein Families
Atg8

Protein Analysis

307

Amino Acids

34.99

Weight (kDa)

8.98

Isoelectric Point (pI)

48.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos PF03372 4 - 220 1.6e-11 Endonuclease/Exonuclease/phosphatase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010833)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06420
fragaria_vesca FvH4_4g21320 FvH4_4g21320
malus_domestica MD13G1141800.v1.1 MD16G1138400.v1.1
prunus_persica Prupe.1G107100_v2.0.a1 Prupe.1G107100_v2.0.a1
pyrus_communis pycom13g12340 pycom16g12230
rosa_chinensis RchiOBHm_Chr4g0427091
rosa_laevigata RLG00000007262
rosa_multiflora Rmu_sc0000953.1_g000030
rosa_roxburghii Rroxscaffold_5G00368920
rosa_rugosa Rorug04G0215900 Rorug04G0216000
rosa_samantha Rh4AG271700 Rh4BG277600 Rh4CG292300 Rh4DG275200
rosa_wichuraiana Rw4G023570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 897
AciI CCGC 2 cut(s) 458, 895
AcsI RAATTY 1 cut(s) 369
AcuI CTGAAG 3 cut(s) 243, 497, 674
AfaI GTAC 1 cut(s) 237
AfiI CCNNNNNNNGG 3 cut(s) 238, 530, 901
AgsI TTSAA 4 cut(s) 248, 418, 703, 722
AhlI ACTAGT 1 cut(s) 166
AjnI CCWGG 3 cut(s) 231, 545, 851
AloI GAACNNNNNNTCC 2 cut(s) 202, 234
AluBI AGCT 9 cut(s) 197, 251, 257, 365, 511, 539, 584, 726, 823
AluI AGCT 9 cut(s) 197, 251, 257, 365, 511, 539, 584, 726, 823
Alw21I GWGCWC 2 cut(s) 436, 586
Alw26I GTCTC 1 cut(s) 298
AlwNI CAGNNNCTG 1 cut(s) 852
AoxI GGCC 3 cut(s) 157, 849, 903
ApeKI GCWGC 1 cut(s) 795
ApoI RAATTY 1 cut(s) 369
ArsI GACNNNNNNTTYG 2 cut(s) 455, 487
AseI ATTAAT 2 cut(s) 89, 879
AspS9I GGNCC 5 cut(s) 157, 392, 615, 655, 849
AsuHPI GGTGA 2 cut(s) 535, 553
AsuNHI GCTAGC 1 cut(s) 320
AvaII GGWCC 3 cut(s) 392, 615, 655
BanII GRGCYC 2 cut(s) 58, 586
BauI CACGAG 1 cut(s) 24
Bbv12I GWGCWC 2 cut(s) 436, 586
BbvI GCAGC 1 cut(s) 782
BciT130I CCWGG 3 cut(s) 233, 547, 853
BcoDI GTCTC 1 cut(s) 298
BcuI ACTAGT 1 cut(s) 166
BfaI CTAG 5 cut(s) 59, 167, 297, 321, 642
BfmI CTRYAG 1 cut(s) 756
BisI GCNGC 1 cut(s) 796
BlsI GCNGC 1 cut(s) 797
Bme1390I CCNGG 3 cut(s) 233, 547, 853
Bme18I GGWCC 3 cut(s) 392, 615, 655
BmgT120I GGNCC 5 cut(s) 157, 392, 615, 655, 849
BmiI GGNNCC 1 cut(s) 777
BmrFI CCNGG 3 cut(s) 233, 547, 853
BmrI ACTGGG 1 cut(s) 164
BmsI GCATC 2 cut(s) 818, 904
BmtI GCTAGC 1 cut(s) 324
BmuI ACTGGG 1 cut(s) 164
BplI GAGNNNNNCTC 2 cut(s) 278, 310
BpmI CTGGAG 2 cut(s) 166, 215
Bpu10I CCTNAGC 1 cut(s) 845
BsaJI CCNNGG 3 cut(s) 395, 621, 651
Bsc4I CCNNNNNNNGG 3 cut(s) 238, 530, 901
Bse1I ACTGG 3 cut(s) 20, 159, 915
Bse3DI GCAATG 1 cut(s) 658
BseBI CCWGG 3 cut(s) 233, 547, 853
BseDI CCNNGG 3 cut(s) 395, 621, 651
BseGI GGATG 3 cut(s) 216, 486, 919
BseLI CCNNNNNNNGG 3 cut(s) 238, 530, 901
BseMI GCAATG 1 cut(s) 658
BseMII CTCAG 3 cut(s) 588, 838, 859
BseNI ACTGG 3 cut(s) 20, 159, 915
BseXI GCAGC 1 cut(s) 782
Bsh1285I CGRYCG 1 cut(s) 184
BshFI GGCC 3 cut(s) 159, 851, 905
BsiEI CGRYCG 1 cut(s) 184
BsiHKAI GWGCWC 2 cut(s) 436, 586
BslI CCNNNNNNNGG 3 cut(s) 238, 530, 901
BsmAI GTCTC 1 cut(s) 298
BsmI GAATGC 1 cut(s) 25
BsnI GGCC 3 cut(s) 159, 851, 905
Bsp1286I GDGCHC 3 cut(s) 58, 436, 586
Bsp143I GATC 3 cut(s) 149, 181, 862
BspACI CCGC 2 cut(s) 458, 895
BspANI GGCC 3 cut(s) 159, 851, 905
BspCNI CTCAG 3 cut(s) 589, 837, 858
BspHI TCATGA 2 cut(s) 283, 436
BspLI GGNNCC 1 cut(s) 777
BspOI GCTAGC 1 cut(s) 324
BsrBI CCGCTC 1 cut(s) 897
BsrDI GCAATG 1 cut(s) 658
BsrI ACTGG 3 cut(s) 20, 159, 915
BssECI CCNNGG 3 cut(s) 395, 621, 651
BssMI GATC 3 cut(s) 149, 181, 862
BssSI CACGAG 1 cut(s) 24
BssT1I CCWWGG 1 cut(s) 395
Bst2BI CACGAG 1 cut(s) 24
Bst2UI CCWGG 3 cut(s) 233, 547, 853
Bst4CI ACNGT 3 cut(s) 271, 711, 760
BstC8I GCNNGC 4 cut(s) 161, 191, 195, 322
BstDEI CTNAG 4 cut(s) 597, 824, 845, 900
BstDSI CCRYGG 1 cut(s) 621
BstF5I GGATG 3 cut(s) 216, 486, 919
BstKTI GATC 3 cut(s) 152, 184, 865
BstMAI GTCTC 1 cut(s) 298
BstMBI GATC 3 cut(s) 149, 181, 862
BstMCI CGRYCG 1 cut(s) 184
BstMWI GCNNNNNNNGC 2 cut(s) 317, 352
BstNI CCWGG 3 cut(s) 233, 547, 853
BstSCI CCNGG 3 cut(s) 231, 545, 851
BstSFI CTRYAG 1 cut(s) 756
BstV1I GCAGC 1 cut(s) 782
BstXI CCANNNNNNTGG 1 cut(s) 207
BsuRI GGCC 3 cut(s) 159, 851, 905
BtgI CCRYGG 1 cut(s) 621
BtsCI GGATG 3 cut(s) 216, 486, 919
BtsI GCAGTG 1 cut(s) 306
BtsIMutI CAGTG 3 cut(s) 152, 306, 908
Cac8I GCNNGC 4 cut(s) 161, 191, 195, 322
CaiI CAGNNNCTG 1 cut(s) 852
CciI TCATGA 2 cut(s) 283, 436
Cfr13I GGNCC 5 cut(s) 157, 392, 615, 655, 849
Csp6I GTAC 1 cut(s) 236
CviAII CATG 7 cut(s) 67, 284, 356, 389, 437, 841, 866
CviQI GTAC 1 cut(s) 236
DdeI CTNAG 4 cut(s) 597, 824, 845, 900
DpnI GATC 3 cut(s) 151, 183, 864
DpnII GATC 3 cut(s) 149, 181, 862
EciI GGCGGA 1 cut(s) 447
Ecl136II GAGCTC 1 cut(s) 584
Eco130I CCWWGG 1 cut(s) 395
Eco147I AGGCCT 1 cut(s) 905
Eco24I GRGCYC 2 cut(s) 58, 586
Eco47I GGWCC 3 cut(s) 392, 615, 655
Eco53kI GAGCTC 1 cut(s) 584
Eco57I CTGAAG 3 cut(s) 243, 497, 674
EcoICRI GAGCTC 1 cut(s) 584
EcoO109I RGGNCCY 1 cut(s) 849
EcoRII CCWGG 3 cut(s) 231, 545, 851
EcoT14I CCWWGG 1 cut(s) 395
EcoT38I GRGCYC 2 cut(s) 58, 586
ErhI CCWWGG 1 cut(s) 395
FaeI CATG 7 cut(s) 70, 287, 359, 392, 440, 844, 869
FatI CATG 7 cut(s) 66, 283, 355, 388, 436, 840, 865
FauI CCCGC 1 cut(s) 902
Fnu4HI GCNGC 1 cut(s) 796
FokI GGATG 2 cut(s) 223, 473
FriOI GRGCYC 2 cut(s) 58, 586
Fsp4HI GCNGC 1 cut(s) 796
FspBI CTAG 5 cut(s) 59, 167, 297, 321, 642
GluI GCNGC 1 cut(s) 796
GsuI CTGGAG 2 cut(s) 166, 215
HaeIII GGCC 3 cut(s) 159, 851, 905
Hin1II CATG 7 cut(s) 70, 287, 359, 392, 440, 844, 869
HindIII AAGCTT 1 cut(s) 724
HinfI GANTC 2 cut(s) 125, 291
HphI GGTGA 2 cut(s) 535, 553
Hpy166II GTNNAC 2 cut(s) 77, 138
Hpy188I TCNGA 5 cut(s) 106, 223, 655, 716, 827
Hpy188III TCNNGA 6 cut(s) 145, 208, 284, 437, 479, 515
Hpy8I GTNNAC 2 cut(s) 77, 138
HpyAV CCTTC 2 cut(s) 286, 336
HpyCH4III ACNGT 3 cut(s) 271, 711, 760
HpyCH4IV ACGT 2 cut(s) 384, 470
HpyCH4V TGCA 5 cut(s) 193, 422, 633, 784, 884
HpyF10VI GCNNNNNNNGC 2 cut(s) 317, 352
HpyF3I CTNAG 4 cut(s) 597, 824, 845, 900
HpySE526I ACGT 2 cut(s) 384, 470
Hsp92II CATG 7 cut(s) 70, 287, 359, 392, 440, 844, 869
Kzo9I GATC 3 cut(s) 149, 181, 862
LmnI GCTCC 2 cut(s) 202, 775
Lsp1109I GCAGC 1 cut(s) 782
LweI GCATC 2 cut(s) 818, 904
MaeI CTAG 5 cut(s) 59, 167, 297, 321, 642
MaeII ACGT 2 cut(s) 384, 470
MaeIII GTNAC 1 cut(s) 732
MalI GATC 3 cut(s) 151, 183, 864
MbiI CCGCTC 1 cut(s) 897
MboI GATC 3 cut(s) 149, 181, 862
MhlI GDGCHC 3 cut(s) 58, 436, 586
MluCI AATT 3 cut(s) 90, 369, 803
MlyI GAGTC 1 cut(s) 300
MseI TTAA 3 cut(s) 89, 879, 922
MslI CAYNNNNRTG 3 cut(s) 387, 491, 812
MspR9I CCNGG 3 cut(s) 233, 547, 853
Mva1269I GAATGC 1 cut(s) 25
MvaI CCWGG 3 cut(s) 233, 547, 853
MwoI GCNNNNNNNGC 2 cut(s) 317, 352
NdeII GATC 3 cut(s) 149, 181, 862
NheI GCTAGC 1 cut(s) 320
NlaIII CATG 7 cut(s) 70, 287, 359, 392, 440, 844, 869
NlaIV GGNNCC 1 cut(s) 777
NmeAIII GCCGAG 2 cut(s) 358, 567
PagI TCATGA 2 cut(s) 283, 436
PceI AGGCCT 1 cut(s) 905
PcsI WCGNNNNNNNCGW 1 cut(s) 79
PctI GAATGC 1 cut(s) 25
PfeI GAWTC 1 cut(s) 125
PkrI GCNGC 1 cut(s) 797
Ple19I CGATCG 1 cut(s) 184
PleI GAGTC 1 cut(s) 299
PpsI GAGTC 1 cut(s) 299
PshBI ATTAAT 2 cut(s) 89, 879
Psp124BI GAGCTC 1 cut(s) 586
Psp6I CCWGG 3 cut(s) 231, 545, 851
PspGI CCWGG 3 cut(s) 231, 545, 851
PspN4I GGNNCC 1 cut(s) 777
PspPI GGNCC 5 cut(s) 157, 392, 615, 655, 849
PstNI CAGNNNCTG 1 cut(s) 852
PvuI CGATCG 1 cut(s) 184
RsaI GTAC 1 cut(s) 237
RsaNI GTAC 1 cut(s) 236
RseI CAYNNNNRTG 3 cut(s) 387, 491, 812
SacI GAGCTC 1 cut(s) 586
SaqAI TTAA 3 cut(s) 89, 879, 922
SatI GCNGC 1 cut(s) 796
Sau3AI GATC 3 cut(s) 149, 181, 862
Sau96I GGNCC 5 cut(s) 157, 392, 615, 655, 849
SchI GAGTC 1 cut(s) 300
ScrFI CCNGG 3 cut(s) 233, 547, 853
SduI GDGCHC 3 cut(s) 58, 436, 586
SfaNI GCATC 2 cut(s) 818, 904
SfcI CTRYAG 1 cut(s) 756
SinI GGWCC 3 cut(s) 392, 615, 655
SmiMI CAYNNNNRTG 3 cut(s) 387, 491, 812
SpeI ACTAGT 1 cut(s) 166
Sse9I AATT 3 cut(s) 90, 369, 803
SseBI AGGCCT 1 cut(s) 905
SsiI CCGC 2 cut(s) 458, 895
SspI AATATT 1 cut(s) 877
SspMI CTAG 5 cut(s) 59, 167, 297, 321, 642
SstI GAGCTC 1 cut(s) 586
StuI AGGCCT 1 cut(s) 905
StyD4I CCNGG 3 cut(s) 231, 545, 851
StyI CCWWGG 1 cut(s) 395
TaaI ACNGT 3 cut(s) 271, 711, 760
TaiI ACGT 2 cut(s) 387, 473
TaqI TCGA 1 cut(s) 184
TasI AATT 3 cut(s) 90, 369, 803
TfiI GAWTC 1 cut(s) 125
Tru1I TTAA 3 cut(s) 89, 879, 922
Tru9I TTAA 3 cut(s) 89, 879, 922
TscAI CASTG 3 cut(s) 159, 313, 915
TseI GCWGC 1 cut(s) 795
TspDTI ATGAA 9 cut(s) 17, 268, 272, 377, 453, 475, 489, 796, 829
TspGWI ACGGA 1 cut(s) 610
TspRI CASTG 3 cut(s) 159, 313, 915
VpaK11BI GGWCC 3 cut(s) 392, 615, 655
VspI ATTAAT 2 cut(s) 89, 879
XapI RAATTY 1 cut(s) 369
XspI CTAG 5 cut(s) 59, 167, 297, 321, 642
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.