AT3G06660

PAPA-1-like family protein zinc finger (HIT type) family protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
2102316 .. 2104908
2593 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G06660.1

Sequence Viewer

Length: 1284 bp
ATGGAGGACTCTGGAGGTTCTGCTTCTACTTTAGCTGGCTTTACGGGTAGGAGAAGGAGAAGCGCTCTGCCTCGTCGACCCCGCGATATTAAAGGGAGCTTGCATAGTTTCAAGTTTCTGCCACCCTCAACGCAGACAAACACTGCTCTTAGCAATGAAGCTAACCCAAGTTTTAGGAATACCAATAGTTTATGTGGGTCTGTGAGTGAGAACAAACTGAAAGTGAAGCTTAAGCTTGGTGCTGGTGTTACCCGTACGTTGCAAACCAACTCTGAGGCGGGTACTTATACCAAAGCTTTGGATAATGGACAAAAACCATTTCAAAGTAAGGTAAAAGGCAATGGTCATGTTCAGAAAACACTGTTTCTAGGAGATATACATCAATCTAGAGGATATCCGTCTAAGACTGAGAATGGTGCGTCCATGTCCGAGAAGAGCAAACGAGGTCTTAAGAAACGTGTATTGGATCCAGAGCCAGACAGTGATGATGGAGATGAGGAAATCAGATACCTCGTAAAGTTAAAGTCTAAAAGGGTCGGGGTCTCTCATGAAGGTAAAGAGAGTGAAGGAGGCAGAAGGATACACAGCAGTGGTCATGACATGGAAGACGGAAAACATCTCTCATCAGACAAACTTGCTGTGTCCGGAAGGAAAAAGCCGGTGATGGGAATGGTTGATCCGCTCCCGGCAGGAGAAACAAGCGGACAAATTCCTACTACACGTACTCGGGCTCTCCAATCTGGAAAGGATCCACATTCTGTCATCAGGTCGAGTTCTCTTGAGTTCCCTGATGGCTTACCTTGCCCCTCATCTAAAAGACCAAAACAGAAGCTTTCTGAGGTAGAGCAACAATCCAAGAAGGCCGAAGCTGCACAGAGACGGCGAATGCAGTGTGAGAAGGCTGCCCAAGAAGCCGAGGCTGAAGCTATCAGGAAAATACTCGGACAAGATTCTGGTAGAAAGAAAAGAGAGGAGAAGATAAAAAAACAACAGGAAGAACGAGCTCAGGAGAGAGCTGCAAGATCAAGCACACTCGCATCAAACACTATCAGATTGGTTATTGGTCCAAGTGGAACAACTATGACATTTTCTGAAGACATTGGTCTTCCAGATATCTTCAAGCCAGTCACGTACAGTTATCCTCCTCCGCGAGAGAAATGTGTGGGACCAAATTGCGAGAAAGCGTACAAGTACAGGGATTCAAAGTCGAAGCTGCCATTATGTAGTCTCGGATGTTACAACGCCATTCAAGAGAAGATGGAACAAGCACTGATTCATTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

427

Amino Acids

46.92

Weight (kDa)

9.73

Isoelectric Point (pI)

51.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAPA-1 PF04795 282 - 366 7.6e-19 PAPA-1-like conserved region
zf-HIT PF04438 383 - 414 1.2e-06 HIT zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 682
AccI GTMKAC 1 cut(s) 76
AccII CGCG 2 cut(s) 84, 1150
AccIII TCCGGA 1 cut(s) 644
AciI CCGC 5 cut(s) 82, 278, 680, 702, 1148
AclWI GGATC 5 cut(s) 461, 474, 671, 743, 756
AcsI RAATTY 1 cut(s) 708
AcuI CTGAAG 2 cut(s) 942, 1113
AfaI GTAC 6 cut(s) 256, 283, 724, 1133, 1187, 1193
AfeI AGCGCT 1 cut(s) 64
AfiI CCNNNNNNNGG 1 cut(s) 665
AflII CTTAAG 2 cut(s) 230, 449
AflIII ACRYGT 2 cut(s) 457, 719
AgsI TTSAA 5 cut(s) 112, 323, 1120, 1203, 1250
AjuI GAANNNNNNNTTGG 2 cut(s) 446, 478
AleI CACNNNNGTG 1 cut(s) 588
Alw21I GWGCWC 1 cut(s) 1006
Alw26I GTCTC 3 cut(s) 547, 871, 1232
AlwI GGATC 5 cut(s) 461, 474, 671, 743, 756
Ama87I CYCGRG 1 cut(s) 726
Aor13HI TCCGGA 1 cut(s) 644
Aor51HI AGCGCT 1 cut(s) 64
AoxI GGCC 1 cut(s) 861
ApeKI GCWGC 4 cut(s) 869, 902, 1016, 1213
ApoI RAATTY 1 cut(s) 708
AspLEI GCGC 1 cut(s) 65
AspS9I GGNCC 2 cut(s) 1064, 1166
AsuC2I CCSGG 1 cut(s) 686
AsuHPI GGTGA 1 cut(s) 673
AvaI CYCGRG 1 cut(s) 726
AvaII GGWCC 2 cut(s) 1064, 1166
BamHI GGATCC 2 cut(s) 466, 748
BanII GRGCYC 2 cut(s) 733, 1006
BbsI GAAGAC 3 cut(s) 612, 1097, 1101
Bbv12I GWGCWC 1 cut(s) 1006
BbvI GCAGC 4 cut(s) 856, 889, 1003, 1200
BccI CCATC 4 cut(s) 482, 658, 785, 1252
BceAI ACGGC 1 cut(s) 896
BciVI GTATCC 1 cut(s) 573
BcnI CCSGG 1 cut(s) 686
BcoDI GTCTC 3 cut(s) 547, 871, 1232
BfaI CTAG 2 cut(s) 368, 387
BfoI RGCGCY 1 cut(s) 66
BfrI CTTAAG 2 cut(s) 230, 449
BfuI GTATCC 1 cut(s) 573
BisI GCNGC 4 cut(s) 870, 903, 1017, 1214
BlsI GCNGC 4 cut(s) 871, 904, 1018, 1215
Bme1390I CCNGG 1 cut(s) 686
Bme18I GGWCC 2 cut(s) 1064, 1166
BmeT110I CYCGRG 1 cut(s) 726
BmgT120I GGNCC 2 cut(s) 1064, 1166
BmiI GGNNCC 3 cut(s) 468, 750, 1167
BmrFI CCNGG 1 cut(s) 686
BmsI GCATC 1 cut(s) 1046
BoxI GACNNNNGTC 1 cut(s) 1101
BpiI GAAGAC 3 cut(s) 612, 1097, 1101
BplI GAGNNNNNCTC 2 cut(s) 49, 81
BpmI CTGGAG 1 cut(s) 33
Bpu10I CCTNAGC 1 cut(s) 1005
BpuEI CTTGAG 1 cut(s) 800
BpuMI CCSGG 1 cut(s) 686
BsaAI YACGTR 2 cut(s) 722, 1131
BsaBI GATNNNNATC 1 cut(s) 378
BsaI GGTCTC 1 cut(s) 547
BsaJI CCNNGG 1 cut(s) 915
BsaWI WCCGGW 1 cut(s) 644
Bsc4I CCNNNNNNNGG 1 cut(s) 665
Bse118I RCCGGY 1 cut(s) 658
Bse1I ACTGG 1 cut(s) 1124
Bse3DI GCAATG 3 cut(s) 160, 346, 1276
Bse8I GATNNNNATC 1 cut(s) 378
BseAI TCCGGA 1 cut(s) 644
BseDI CCNNGG 1 cut(s) 915
BseGI GGATG 1 cut(s) 1238
BseJI GATNNNNATC 1 cut(s) 378
BseLI CCNNNNNNNGG 1 cut(s) 665
BseMI GCAATG 3 cut(s) 160, 346, 1276
BseMII CTCAG 4 cut(s) 264, 399, 828, 1019
BseNI ACTGG 1 cut(s) 1124
BseRI GAGGAG 2 cut(s) 986, 1134
BseXI GCAGC 4 cut(s) 856, 889, 1003, 1200
BsgI GTGCAG 1 cut(s) 855
Bsh1236I CGCG 2 cut(s) 84, 1150
BshFI GGCC 1 cut(s) 863
BsiHKAI GWGCWC 1 cut(s) 1006
BsiHKCI CYCGRG 1 cut(s) 726
BsiSI CCGG 3 cut(s) 645, 659, 686
BsiWI CGTACG 1 cut(s) 254
BslFI GGGAC 1 cut(s) 1179
BslI CCNNNNNNNGG 1 cut(s) 665
BsmAI GTCTC 3 cut(s) 547, 871, 1232
BsmBI CGTCTC 1 cut(s) 871
BsmFI GGGAC 1 cut(s) 1179
BsmI GAATGC 1 cut(s) 891
BsnI GGCC 1 cut(s) 863
Bso31I GGTCTC 1 cut(s) 547
BsoBI CYCGRG 1 cut(s) 726
Bsp1286I GDGCHC 2 cut(s) 733, 1006
Bsp13I TCCGGA 1 cut(s) 644
Bsp143I GATC 4 cut(s) 466, 676, 748, 1022
BspACI CCGC 5 cut(s) 82, 278, 680, 702, 1148
BspANI GGCC 1 cut(s) 863
BspCNI CTCAG 4 cut(s) 265, 400, 829, 1018
BspEI TCCGGA 1 cut(s) 644
BspFNI CGCG 2 cut(s) 84, 1150
BspHI TCATGA 2 cut(s) 547, 595
BspLI GGNNCC 3 cut(s) 468, 750, 1167
BspPI GGATC 5 cut(s) 461, 474, 671, 743, 756
BspQI GCTCTTC 1 cut(s) 428
BspTI CTTAAG 2 cut(s) 230, 449
BspTNI GGTCTC 1 cut(s) 547
BsrBI CCGCTC 1 cut(s) 682
BsrDI GCAATG 3 cut(s) 160, 346, 1276
BsrFI RCCGGY 1 cut(s) 658
BsrI ACTGG 1 cut(s) 1124
BssAI RCCGGY 1 cut(s) 658
BssECI CCNNGG 1 cut(s) 915
BssMI GATC 4 cut(s) 466, 676, 748, 1022
Bst4CI ACNGT 3 cut(s) 363, 482, 1136
Bst6I CTCTTC 1 cut(s) 428
BstAFI CTTAAG 2 cut(s) 230, 449
BstBAI YACGTR 2 cut(s) 722, 1131
BstC8I GCNNGC 2 cut(s) 37, 101
BstDEI CTNAG 6 cut(s) 149, 273, 402, 408, 837, 1005
BstF5I GGATG 1 cut(s) 1238
BstFNI CGCG 2 cut(s) 84, 1150
BstH2I RGCGCY 1 cut(s) 66
BstHHI GCGC 1 cut(s) 65
BstKTI GATC 4 cut(s) 469, 679, 751, 1025
BstMAI GTCTC 3 cut(s) 547, 871, 1232
BstMBI GATC 4 cut(s) 466, 676, 748, 1022
BstMWI GCNNNNNNNGC 3 cut(s) 801, 869, 911
BstPAI GACNNNNGTC 1 cut(s) 1101
BstSCI CCNGG 1 cut(s) 684
BstUI CGCG 2 cut(s) 84, 1150
BstV1I GCAGC 4 cut(s) 856, 889, 1003, 1200
BstV2I GAAGAC 3 cut(s) 612, 1097, 1101
BstX2I RGATCY 2 cut(s) 466, 748
BstXI CCANNNNNNTGG 1 cut(s) 298
BstYI RGATCY 2 cut(s) 466, 748
BsuI GTATCC 1 cut(s) 573
BsuRI GGCC 1 cut(s) 863
BtsCI GGATG 1 cut(s) 1238
BtsI GCAGTG 3 cut(s) 141, 595, 896
BtsIMutI CAGTG 6 cut(s) 141, 359, 487, 595, 896, 1268
Cac8I GCNNGC 2 cut(s) 37, 101
CciI TCATGA 2 cut(s) 547, 595
CfoI GCGC 1 cut(s) 65
Cfr10I RCCGGY 1 cut(s) 658
Cfr13I GGNCC 2 cut(s) 1064, 1166
CseI GACGC 1 cut(s) 408
Csp6I GTAC 6 cut(s) 255, 282, 723, 1132, 1186, 1192
CviAII CATG 5 cut(s) 347, 424, 548, 596, 601
CviQI GTAC 6 cut(s) 255, 282, 723, 1132, 1186, 1192
DdeI CTNAG 6 cut(s) 149, 273, 402, 408, 837, 1005
DpnI GATC 4 cut(s) 468, 678, 750, 1024
DpnII GATC 4 cut(s) 466, 676, 748, 1022
Eam1104I CTCTTC 1 cut(s) 428
EarI CTCTTC 1 cut(s) 428
Ecl136II GAGCTC 1 cut(s) 1004
Eco24I GRGCYC 2 cut(s) 733, 1006
Eco31I GGTCTC 1 cut(s) 547
Eco32I GATATC 2 cut(s) 395, 1114
Eco47I GGWCC 2 cut(s) 1064, 1166
Eco47III AGCGCT 1 cut(s) 64
Eco53kI GAGCTC 1 cut(s) 1004
Eco57I CTGAAG 2 cut(s) 942, 1113
Eco88I CYCGRG 1 cut(s) 726
EcoICRI GAGCTC 1 cut(s) 1004
EcoRV GATATC 2 cut(s) 395, 1114
EcoT38I GRGCYC 2 cut(s) 733, 1006
Esp3I CGTCTC 1 cut(s) 871
FaeI CATG 5 cut(s) 350, 427, 551, 599, 604
FalI AAGNNNNNCTT 2 cut(s) 213, 245
FaqI GGGAC 1 cut(s) 1179
FatI CATG 5 cut(s) 346, 423, 547, 595, 600
FauI CCCGC 2 cut(s) 89, 271
FblI GTMKAC 1 cut(s) 76
Fnu4HI GCNGC 4 cut(s) 870, 903, 1017, 1214
FokI GGATG 1 cut(s) 1245
FriOI GRGCYC 2 cut(s) 733, 1006
Fsp4HI GCNGC 4 cut(s) 870, 903, 1017, 1214
FspBI CTAG 2 cut(s) 368, 387
GlaI GCGC 1 cut(s) 64
GluI GCNGC 4 cut(s) 870, 903, 1017, 1214
GsuI CTGGAG 1 cut(s) 33
HaeII RGCGCY 1 cut(s) 66
HaeIII GGCC 1 cut(s) 863
HapII CCGG 3 cut(s) 645, 659, 686
HgaI GACGC 1 cut(s) 408
HhaI GCGC 1 cut(s) 65
Hin1II CATG 5 cut(s) 350, 427, 551, 599, 604
Hin6I GCGC 1 cut(s) 63
HinP1I GCGC 1 cut(s) 63
HincII GTYRAC 1 cut(s) 77
HindII GTYRAC 1 cut(s) 77
HindIII AAGCTT 4 cut(s) 227, 233, 294, 830
HinfI GANTC 4 cut(s) 8, 950, 1199, 1273
HpaII CCGG 3 cut(s) 645, 659, 686
HphI GGTGA 1 cut(s) 673
Hpy166II GTNNAC 1 cut(s) 77
Hpy8I GTNNAC 1 cut(s) 77
Hpy99I CGWCG 1 cut(s) 78
HpyAV CCTTC 7 cut(s) 48, 545, 560, 570, 642, 853, 892
HpyCH4III ACNGT 3 cut(s) 363, 482, 1136
HpyCH4IV ACGT 4 cut(s) 257, 457, 721, 1130
HpyCH4V TGCA 5 cut(s) 103, 262, 872, 889, 1019
HpyF10VI GCNNNNNNNGC 3 cut(s) 801, 869, 911
HpyF3I CTNAG 6 cut(s) 149, 273, 402, 408, 837, 1005
HpySE526I ACGT 4 cut(s) 257, 457, 721, 1130
Hsp92II CATG 5 cut(s) 350, 427, 551, 599, 604
HspAI GCGC 1 cut(s) 63
Kpn2I TCCGGA 1 cut(s) 644
Kzo9I GATC 4 cut(s) 466, 676, 748, 1022
LguI GCTCTTC 1 cut(s) 428
LmnI GCTCC 2 cut(s) 96, 687
Lsp1109I GCAGC 4 cut(s) 856, 889, 1003, 1200
LweI GCATC 1 cut(s) 1046
MaeI CTAG 2 cut(s) 368, 387
MaeII ACGT 4 cut(s) 257, 457, 721, 1130
MaeIII GTNAC 3 cut(s) 247, 1126, 1235
MalI GATC 4 cut(s) 468, 678, 750, 1024
MbiI CCGCTC 1 cut(s) 682
MboI GATC 4 cut(s) 466, 676, 748, 1022
MboII GAAGA 8 cut(s) 445, 617, 988, 1007, 1097, 1106, 1108, 1267
MflI RGATCY 2 cut(s) 466, 748
MhlI GDGCHC 2 cut(s) 733, 1006
MluCI AATT 2 cut(s) 708, 1171
MlyI GAGTC 1 cut(s) 2
MroI TCCGGA 1 cut(s) 644
MseI TTAA 4 cut(s) 90, 231, 450, 521
MslI CAYNNNNRTG 1 cut(s) 588
MspCI CTTAAG 2 cut(s) 230, 449
MspI CCGG 3 cut(s) 645, 659, 686
MspR9I CCNGG 1 cut(s) 686
Mva1269I GAATGC 1 cut(s) 891
MvnI CGCG 2 cut(s) 84, 1150
MwoI GCNNNNNNNGC 3 cut(s) 801, 869, 911
NciI CCSGG 1 cut(s) 686
NdeII GATC 4 cut(s) 466, 676, 748, 1022
NlaIII CATG 5 cut(s) 350, 427, 551, 599, 604
NlaIV GGNNCC 3 cut(s) 468, 750, 1167
NmeAIII GCCGAG 1 cut(s) 940
NmuCI GTSAC 1 cut(s) 1126
OliI CACNNNNGTG 1 cut(s) 588
PagI TCATGA 2 cut(s) 547, 595
PciSI GCTCTTC 1 cut(s) 428
PctI GAATGC 1 cut(s) 891
PfeI GAWTC 3 cut(s) 950, 1199, 1273
Pfl23II CGTACG 1 cut(s) 254
PkrI GCNGC 4 cut(s) 871, 904, 1018, 1215
PleI GAGTC 1 cut(s) 2
PpsI GAGTC 1 cut(s) 2
Ppu21I YACGTR 2 cut(s) 722, 1131
PshAI GACNNNNGTC 1 cut(s) 1101
Psp124BI GAGCTC 1 cut(s) 1006
PspLI CGTACG 1 cut(s) 254
PspN4I GGNNCC 3 cut(s) 468, 750, 1167
PspPI GGNCC 2 cut(s) 1064, 1166
PsuI RGATCY 2 cut(s) 466, 748
RsaI GTAC 6 cut(s) 256, 283, 724, 1133, 1187, 1193
RsaNI GTAC 6 cut(s) 255, 282, 723, 1132, 1186, 1192
RseI CAYNNNNRTG 1 cut(s) 588
SacI GAGCTC 1 cut(s) 1006
SalI GTCGAC 1 cut(s) 75
SapI GCTCTTC 1 cut(s) 428
SaqAI TTAA 4 cut(s) 90, 231, 450, 521
SatI GCNGC 4 cut(s) 870, 903, 1017, 1214
Sau3AI GATC 4 cut(s) 466, 676, 748, 1022
Sau96I GGNCC 2 cut(s) 1064, 1166
SchI GAGTC 1 cut(s) 2
ScrFI CCNGG 1 cut(s) 686
SduI GDGCHC 2 cut(s) 733, 1006
SfaNI GCATC 1 cut(s) 1046
SinI GGWCC 2 cut(s) 1064, 1166
SmiMI CAYNNNNRTG 1 cut(s) 588
SmlI CTYRAG 3 cut(s) 230, 449, 779
SmoI CTYRAG 3 cut(s) 230, 449, 779
Sse9I AATT 2 cut(s) 708, 1171
SsiI CCGC 5 cut(s) 82, 278, 680, 702, 1148
SspMI CTAG 2 cut(s) 368, 387
SstI GAGCTC 1 cut(s) 1006
StyD4I CCNGG 1 cut(s) 684
TaaI ACNGT 3 cut(s) 363, 482, 1136
TaiI ACGT 4 cut(s) 260, 460, 724, 1133
TaqI TCGA 3 cut(s) 76, 770, 1208
TasI AATT 2 cut(s) 708, 1171
TatI WGTACW 1 cut(s) 1191
TfiI GAWTC 3 cut(s) 950, 1199, 1273
Tru1I TTAA 4 cut(s) 90, 231, 450, 521
Tru9I TTAA 4 cut(s) 90, 231, 450, 521
TscAI CASTG 6 cut(s) 148, 366, 487, 595, 896, 1275
TseFI GTSAC 1 cut(s) 1126
TseI GCWGC 4 cut(s) 869, 902, 1016, 1213
Tsp45I GTSAC 1 cut(s) 1126
TspDTI ATGAA 3 cut(s) 171, 564, 1265
TspGWI ACGGA 2 cut(s) 387, 624
TspRI CASTG 6 cut(s) 148, 366, 487, 595, 896, 1275
Vha464I CTTAAG 2 cut(s) 230, 449
VpaK11BI GGWCC 2 cut(s) 1064, 1166
XapI RAATTY 1 cut(s) 708
XbaI TCTAGA 1 cut(s) 386
XmiI GTMKAC 1 cut(s) 76
XspI CTAG 2 cut(s) 368, 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.