Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0005591

Physical Location & Seq

Genomic Coordinates Reverse (-)

43558478 .. 43562913

Gene Structure 4436 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG262400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGGAAAGCTTTGGTGGCTCTGGGTTTTCTGCTGGAGGATGCATTGTAAGGAAGAAAAGGAGTGTTGTATTGCATAAACCTCGCTTGGATCCACTCACATTTTCTGAGAGGTCTAATATCTTGCTACGAATTGTACATCCCTTTGGCAAAGAAAGCCTTGATAAGAATCATGATAGTAAGGAGAAAGGAGTGCATTCTGATGGACTGCGAAGTGAGAAAAGGCCGAAGAAATTAAAGCTTAAGCTTCGAGGTGTTACTCATACAATCCAAACCAAGTGTACAGTTGATTCTAGTCTTGGTGGTGGCTCTTCCATACCTAAATCCTCATGCCCTTCCGATGACTTCATACCCCAACCGAAGCCACTTCTCCAGGATGGCAAACCCTTCTGTTCTTCTGATGGAGGCAAAGGCATTGGAGTTAAACGGAAATACTCCTTGAAATTTGACTCTACCTTGAGAAAGGAGTATTCTTTGAAAGGTAAAATCTCCAGGGAAAGTGTTCCTGAGGATGGTGAACCAGCTCGTAAGAGCAAGAGGATTCCTAGGAGACGTGTTTTGGATGTGGGACTTAGTGAAGATGGTAATGAAGATGGTGAAATTCGATTCCTTGAAAGACTAAATGCTTCTAAGGTTGCTCTTTCAAAGAGAAATCAAATGGATGGCGATCATGGAGGTGATATTGGAAACTGTAAATTACCAAGGCTGCGGAAACATGGTGGAATAAAGTCAAGATCAGAAAAAATGTACGAGGATAAAGACTATTTGGGAGAAGAAGAACTGACATCTGATGATGAACTTCAATCTAATGGGAAGATGCTGAAAAGGGGATCTCTTAGTTTACTTCTGGAAGGGCCGCAAAAGTCCACGCCCACCACACGTAACCGGGCCCTTCAGTCTGGGATAGATATCTTAACTGGTTCTGGTTCAAGCGTTGTTAACCCTGCAAATCTGTTGCTTCCTGCCCCATCTAGAAAAAAGAAGGAGAAAATCTCTGAAGTGGATAAGCAATCGAAGAAAGCCGAGGCTGCACAGAGACGTAAAATACAAACAGAGAAGATAGCTAGAGAAGCTGAGGTTTGGTCTTTTATATCATGTTTTATATTATGTTCTCAGGTGGTAGTCTTAGGAAACGGTCTCACTTGGTATATTCTAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAPA-1 zf-HIT

Protein Analysis

385

Amino Acids

42.49

Weight (kDa)

9.72

Isoelectric Point (pI)

55.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005591)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06660
fragaria_vesca	FvH4_4g19561 FvH4_4g19561 FvH4_4g19561 FvH4_4g19561 FvH4_4g19561
malus_domestica	MD13G1155600.v1.1 MD16G1155300.v1.1
prunus_persica	Prupe.1G118900_v2.0.a1 Prupe.1G118900_v2.0.a1 Prupe.1G118900_v2.0.a1 Prupe.1G118900_v2.0.a1 Prupe.1G118900_v2.0.a1 Prupe.1G118900_v2.0.a1 Prupe.1G118900_v2.0.a1
pyrus_communis	pycom13g13260
rosa_chinensis	RchiOBHm_Chr4g0424821
rosa_laevigata	RLG00000007419
rosa_multiflora	Rmu_sc0003608.1_g000022 Rmu_sc0007418.1_g000001
rosa_roxburghii	Rroxscaffold_5G00367040
rosa_rugosa	Rorug04G0199300
rosa_samantha	Rh4AG257100 Rh4BG262400 Rh4CG273400 Rh4DG258200
rosa_wichuraiana	Rw4G022180 Rw4G024040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	706, 854
AclWI	GGATC	3 cut(s)	83, 96, 835
AcsI	RAATTY	2 cut(s)	440, 597
AcuI	CTGAAG	2 cut(s)	875, 1014
AfaI	GTAC	3 cut(s)	135, 280, 746
AfiI	CCNNNNNNNGG	1 cut(s)	509
AflII	CTTAAG	1 cut(s)	239
AflIII	ACRYGT	2 cut(s)	550, 875
AgsI	TTSAA	6 cut(s)	439, 475, 611, 642, 800, 927
AjiI	CACGTC	1 cut(s)	551
AjnI	CCWGG	2 cut(s)	369, 488
AluBI	AGCT	6 cut(s)	9, 238, 244, 521, 1061, 1070
AluI	AGCT	6 cut(s)	9, 238, 244, 521, 1061, 1070
Alw26I	GTCTC	3 cut(s)	541, 1027, 1139
AlwI	GGATC	3 cut(s)	83, 96, 835
AoxI	GGCC	3 cut(s)	221, 851, 885
ApaI	GGGCCC	1 cut(s)	889
ApeKI	GCWGC	2 cut(s)	703, 1025
ApoI	RAATTY	2 cut(s)	440, 597
Asp700I	GAANNNNTTC	1 cut(s)	498
AspA2I	CCTAGG	1 cut(s)	542
AspS9I	GGNCC	3 cut(s)	851, 885, 886
AsuC2I	CCSGG	1 cut(s)	884
AsuHPI	GGTGA	3 cut(s)	524, 605, 686
AvrII	CCTAGG	1 cut(s)	542
AxyI	CCTNAGG	1 cut(s)	504
BaeGI	GKGCMC	1 cut(s)	889
BamHI	GGATCC	1 cut(s)	88
BanII	GRGCYC	1 cut(s)	889
BbvCI	CCTCAGC	1 cut(s)	1071
BbvI	GCAGC	2 cut(s)	690, 1012
BccI	CCATC	8 cut(s)	194, 368, 392, 503, 572, 584, 653, 973
BcgI	CGANNNNNNTGC	2 cut(s)	62, 96
BciT130I	CCWGG	2 cut(s)	371, 490
BcnI	CCSGG	1 cut(s)	884
BcoDI	GTCTC	3 cut(s)	541, 1027, 1139
BfaI	CTAG	5 cut(s)	291, 543, 969, 1062, 1151
BfrI	CTTAAG	1 cut(s)	239
BisI	GCNGC	3 cut(s)	704, 854, 1026
BlnI	CCTAGG	1 cut(s)	542
BlsI	GCNGC	3 cut(s)	705, 855, 1027
Bme1390I	CCNGG	3 cut(s)	371, 490, 884
BmgBI	CACGTC	1 cut(s)	551
BmgT120I	GGNCC	3 cut(s)	851, 885, 886
BmiI	GGNNCC	2 cut(s)	90, 887
BmrFI	CCNGG	3 cut(s)	371, 490, 884
BmsI	GCATC	2 cut(s)	29, 804
BplI	GAGNNNNNCTC	2 cut(s)	974, 1006
BpmI	CTGGAG	3 cut(s)	54, 353, 472
Bpu10I	CCTNAGC	1 cut(s)	1071
BpuEI	CTTGAG	1 cut(s)	475
BpuMI	CCSGG	1 cut(s)	884
BsaAI	YACGTR	1 cut(s)	878
BsaBI	GATNNNNATC	3 cut(s)	165, 663, 905
BsaI	GGTCTC	1 cut(s)	1139
BsaJI	CCNNGG	4 cut(s)	489, 542, 698, 1020
Bsc4I	CCNNNNNNNGG	1 cut(s)	509
Bse1I	ACTGG	1 cut(s)	919
Bse21I	CCTNAGG	1 cut(s)	504
Bse8I	GATNNNNATC	3 cut(s)	165, 663, 905
BseBI	CCWGG	2 cut(s)	371, 490
BseDI	CCNNGG	4 cut(s)	489, 542, 698, 1020
BseGI	GGATG	6 cut(s)	44, 136, 379, 514, 565, 664
BseJI	GATNNNNATC	3 cut(s)	165, 663, 905
BseLI	CCNNNNNNNGG	1 cut(s)	509
BseMII	CTCAG	4 cut(s)	96, 495, 1062, 1124
BseNI	ACTGG	1 cut(s)	919
BseSI	GKGCMC	1 cut(s)	889
BseXI	GCAGC	2 cut(s)	690, 1012
BsgI	GTGCAG	1 cut(s)	1011
BshFI	GGCC	3 cut(s)	223, 853, 887
BsiSI	CCGG	1 cut(s)	883
BslFI	GGGAC	1 cut(s)	579
BslI	CCNNNNNNNGG	1 cut(s)	509
BsmAI	GTCTC	3 cut(s)	541, 1027, 1139
BsmBI	CGTCTC	2 cut(s)	541, 1027
BsmFI	GGGAC	1 cut(s)	579
BsmI	GAATGC	1 cut(s)	193
BsnI	GGCC	3 cut(s)	223, 853, 887
Bso31I	GGTCTC	1 cut(s)	1139
Bsp120I	GGGCCC	1 cut(s)	885
Bsp1286I	GDGCHC	1 cut(s)	889
Bsp1407I	TGTACA	2 cut(s)	133, 278
Bsp143I	GATC	4 cut(s)	88, 664, 731, 827
BspACI	CCGC	2 cut(s)	706, 854
BspANI	GGCC	3 cut(s)	223, 853, 887
BspCNI	CTCAG	4 cut(s)	97, 496, 1063, 1123
BspHI	TCATGA	1 cut(s)	169
BspLI	GGNNCC	2 cut(s)	90, 887
BspPI	GGATC	3 cut(s)	83, 96, 835
BspQI	GCTCTTC	1 cut(s)	313
BspTI	CTTAAG	1 cut(s)	239
BspTNI	GGTCTC	1 cut(s)	1139
BsrGI	TGTACA	2 cut(s)	133, 278
BsrI	ACTGG	1 cut(s)	919
BssECI	CCNNGG	4 cut(s)	489, 542, 698, 1020
BssMI	GATC	4 cut(s)	88, 664, 731, 827
BssT1I	CCWWGG	2 cut(s)	542, 698
Bst2UI	CCWGG	2 cut(s)	371, 490
Bst4CI	ACNGT	3 cut(s)	283, 689, 1133
Bst6I	CTCTTC	1 cut(s)	313
BstAFI	CTTAAG	1 cut(s)	239
BstAUI	TGTACA	2 cut(s)	133, 278
BstBAI	YACGTR	1 cut(s)	878
BstDEI	CTNAG	8 cut(s)	105, 504, 569, 627, 833, 1071, 1110, 1123
BstF5I	GGATG	6 cut(s)	44, 136, 379, 514, 565, 664
BstKTI	GATC	4 cut(s)	91, 667, 734, 830
BstMAI	GTCTC	3 cut(s)	541, 1027, 1139
BstMBI	GATC	4 cut(s)	88, 664, 731, 827
BstMWI	GCNNNNNNNGC	4 cut(s)	15, 153, 1025, 1067
BstNI	CCWGG	2 cut(s)	371, 490
BstSCI	CCNGG	3 cut(s)	369, 488, 882
BstSLI	GKGCMC	1 cut(s)	889
BstV1I	GCAGC	2 cut(s)	690, 1012
BstX2I	RGATCY	2 cut(s)	88, 827
BstYI	RGATCY	2 cut(s)	88, 827
Bsu36I	CCTNAGG	1 cut(s)	504
BsuRI	GGCC	3 cut(s)	223, 853, 887
BtrI	CACGTC	1 cut(s)	551
BtsCI	GGATG	6 cut(s)	44, 136, 379, 514, 565, 664
CciI	TCATGA	1 cut(s)	169
Cfr13I	GGNCC	3 cut(s)	851, 885, 886
Csp6I	GTAC	3 cut(s)	134, 279, 745
CviAII	CATG	5 cut(s)	170, 327, 668, 713, 1092
CviQI	GTAC	3 cut(s)	134, 279, 745
DdeI	CTNAG	8 cut(s)	105, 504, 569, 627, 833, 1071, 1110, 1123
DpnI	GATC	4 cut(s)	90, 666, 733, 829
DpnII	GATC	4 cut(s)	88, 664, 731, 827
Eam1104I	CTCTTC	1 cut(s)	313
EarI	CTCTTC	1 cut(s)	313
Eco130I	CCWWGG	2 cut(s)	542, 698
Eco24I	GRGCYC	1 cut(s)	889
Eco31I	GGTCTC	1 cut(s)	1139
Eco32I	GATATC	1 cut(s)	907
Eco57I	CTGAAG	2 cut(s)	875, 1014
Eco81I	CCTNAGG	1 cut(s)	504
EcoO109I	RGGNCCY	1 cut(s)	886
EcoRII	CCWGG	2 cut(s)	369, 488
EcoRV	GATATC	1 cut(s)	907
EcoT14I	CCWWGG	2 cut(s)	542, 698
EcoT22I	ATGCAT	1 cut(s)	44
EcoT38I	GRGCYC	1 cut(s)	889
ErhI	CCWWGG	2 cut(s)	542, 698
Esp3I	CGTCTC	2 cut(s)	541, 1027
FaeI	CATG	5 cut(s)	173, 330, 671, 716, 1095
FalI	AAGNNNNNCTT	2 cut(s)	141, 173
FaqI	GGGAC	1 cut(s)	579
FatI	CATG	5 cut(s)	169, 326, 667, 712, 1091
Fnu4HI	GCNGC	3 cut(s)	704, 854, 1026
FokI	GGATG	6 cut(s)	51, 123, 386, 521, 572, 671
FriOI	GRGCYC	1 cut(s)	889
Fsp4HI	GCNGC	3 cut(s)	704, 854, 1026
FspBI	CTAG	5 cut(s)	291, 543, 969, 1062, 1151
GluI	GCNGC	3 cut(s)	704, 854, 1026
GsuI	CTGGAG	3 cut(s)	54, 353, 472
HaeIII	GGCC	3 cut(s)	223, 853, 887
HapII	CCGG	1 cut(s)	883
Hin1II	CATG	5 cut(s)	173, 330, 671, 716, 1095
HincII	GTYRAC	1 cut(s)	937
HindII	GTYRAC	1 cut(s)	937
HindIII	AAGCTT	3 cut(s)	7, 236, 242
HinfI	GANTC	5 cut(s)	166, 287, 446, 538, 603
HpaI	GTTAAC	1 cut(s)	937
HpaII	CCGG	1 cut(s)	883
HphI	GGTGA	3 cut(s)	524, 605, 686
Hpy166II	GTNNAC	5 cut(s)	279, 515, 839, 864, 937
Hpy188I	TCNGA	7 cut(s)	106, 199, 337, 397, 736, 787, 994
Hpy188III	TCNNGA	5 cut(s)	170, 503, 729, 845, 969
Hpy8I	GTNNAC	5 cut(s)	279, 515, 839, 864, 937
HpyAV	CCTTC	5 cut(s)	342, 394, 842, 899, 973
HpyCH4III	ACNGT	3 cut(s)	283, 689, 1133
HpyCH4IV	ACGT	3 cut(s)	550, 877, 1036
HpyCH4V	TGCA	5 cut(s)	42, 73, 193, 944, 1028
HpyF10VI	GCNNNNNNNGC	4 cut(s)	15, 153, 1025, 1067
HpyF3I	CTNAG	8 cut(s)	105, 504, 569, 627, 833, 1071, 1110, 1123
HpySE526I	ACGT	3 cut(s)	550, 877, 1036
Hsp92II	CATG	5 cut(s)	173, 330, 671, 716, 1095
KspAI	GTTAAC	1 cut(s)	937
Kzo9I	GATC	4 cut(s)	88, 664, 731, 827
LguI	GCTCTTC	1 cut(s)	313
Lsp1109I	GCAGC	2 cut(s)	690, 1012
LweI	GCATC	2 cut(s)	29, 804
MaeI	CTAG	5 cut(s)	291, 543, 969, 1062, 1151
MaeII	ACGT	3 cut(s)	550, 877, 1036
MaeIII	GTNAC	2 cut(s)	253, 878
MalI	GATC	4 cut(s)	90, 666, 733, 829
MboI	GATC	4 cut(s)	88, 664, 731, 827
MflI	RGATCY	2 cut(s)	88, 827
MhlI	GDGCHC	1 cut(s)	889
MluCI	AATT	5 cut(s)	129, 230, 440, 597, 692
MlyI	GAGTC	1 cut(s)	440
Mph1103I	ATGCAT	1 cut(s)	44
MroXI	GAANNNNTTC	1 cut(s)	498
MseI	TTAA	5 cut(s)	233, 240, 420, 911, 936
MslI	CAYNNNNRTG	2 cut(s)	198, 672
MspCI	CTTAAG	1 cut(s)	239
MspI	CCGG	1 cut(s)	883
MspR9I	CCNGG	3 cut(s)	371, 490, 884
Mva1269I	GAATGC	1 cut(s)	193
MvaI	CCWGG	2 cut(s)	371, 490
MwoI	GCNNNNNNNGC	4 cut(s)	15, 153, 1025, 1067
NciI	CCSGG	1 cut(s)	884
NdeII	GATC	4 cut(s)	88, 664, 731, 827
NlaIII	CATG	5 cut(s)	173, 330, 671, 716, 1095
NlaIV	GGNNCC	2 cut(s)	90, 887
NmeAIII	GCCGAG	1 cut(s)	1045
NsiI	ATGCAT	1 cut(s)	44
PagI	TCATGA	1 cut(s)	169
PciSI	GCTCTTC	1 cut(s)	313
PctI	GAATGC	1 cut(s)	193
PdmI	GAANNNNTTC	1 cut(s)	498
PfeI	GAWTC	4 cut(s)	166, 287, 538, 603
PfoI	TCCNGGA	1 cut(s)	369
PkrI	GCNGC	3 cut(s)	705, 855, 1027
PleI	GAGTC	1 cut(s)	440
PpsI	GAGTC	1 cut(s)	440
Ppu21I	YACGTR	1 cut(s)	878
Psp6I	CCWGG	2 cut(s)	369, 488
PspGI	CCWGG	2 cut(s)	369, 488
PspN4I	GGNNCC	2 cut(s)	90, 887
PspOMI	GGGCCC	1 cut(s)	885
PspPI	GGNCC	3 cut(s)	851, 885, 886
PsuI	RGATCY	2 cut(s)	88, 827
RsaI	GTAC	3 cut(s)	135, 280, 746
RsaNI	GTAC	3 cut(s)	134, 279, 745
RseI	CAYNNNNRTG	2 cut(s)	198, 672
SapI	GCTCTTC	1 cut(s)	313
SaqAI	TTAA	5 cut(s)	233, 240, 420, 911, 936
SatI	GCNGC	3 cut(s)	704, 854, 1026
Sau3AI	GATC	4 cut(s)	88, 664, 731, 827
Sau96I	GGNCC	3 cut(s)	851, 885, 886
SchI	GAGTC	1 cut(s)	440
ScrFI	CCNGG	3 cut(s)	371, 490, 884
SduI	GDGCHC	1 cut(s)	889
SfaNI	GCATC	2 cut(s)	29, 804
SmiMI	CAYNNNNRTG	2 cut(s)	198, 672
SmlI	CTYRAG	2 cut(s)	239, 454
SmoI	CTYRAG	2 cut(s)	239, 454
Sse9I	AATT	5 cut(s)	129, 230, 440, 597, 692
SsiI	CCGC	2 cut(s)	706, 854
SspMI	CTAG	5 cut(s)	291, 543, 969, 1062, 1151
StyD4I	CCNGG	3 cut(s)	369, 488, 882
StyI	CCWWGG	2 cut(s)	542, 698
TaaI	ACNGT	3 cut(s)	283, 689, 1133
TaiI	ACGT	3 cut(s)	553, 880, 1039
TaqI	TCGA	3 cut(s)	247, 601, 1010
TasI	AATT	5 cut(s)	129, 230, 440, 597, 692
TatI	WGTACW	2 cut(s)	133, 278
TauI	GCSGC	1 cut(s)	856
TfiI	GAWTC	4 cut(s)	166, 287, 538, 603
Tru1I	TTAA	5 cut(s)	233, 240, 420, 911, 936
Tru9I	TTAA	5 cut(s)	233, 240, 420, 911, 936
TseI	GCWGC	2 cut(s)	703, 1025
TspDTI	ATGAA	3 cut(s)	334, 600, 807
TspGWI	ACGGA	1 cut(s)	439
Vha464I	CTTAAG	1 cut(s)	239
XapI	RAATTY	2 cut(s)	440, 597
XbaI	TCTAGA	1 cut(s)	968
XmaJI	CCTAGG	1 cut(s)	542
XmnI	GAANNNNTTC	1 cut(s)	498
XspI	CTAG	5 cut(s)	291, 543, 969, 1062, 1151
Zsp2I	ATGCAT	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.