MD16G1155300.v1.1

PAPA-1-like conserved region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0005591
Physical Location & Seq
Forward (+)
12312099 .. 12312494
396 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1155300.v1.1.491

Sequence Viewer

Length: 303 bp
ATGCAGGGCAGGACCGGCAGTGCTGTCACACTGGCACCAAACACTGTTCGATGGGTCATCGGTCCTAATGGAACCACCGTTACATTTTCTGACAATATTGGTCTGCCTAGTATTTTCAGTCCAGTGCCTTGCAGCTATCCTCCCCCACGTGAAAAATGTGCGGGTCCAAACTGCACGAATGCATACAAGTATCGGGATTCCAAGTCGAAGCTTTCCCTGTGCAGTCTCCAGTGTTACAGATACACGAAAAGATGCAGCCTCCAATTGCTTGCTAATACCATCTCCTCCTGCACATCATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAPA-1 zf-HIT

Protein Analysis

101

Amino Acids

10.83

Weight (kDa)

9.4

Isoelectric Point (pI)

47.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-HIT PF04438 49 - 80 7.2e-07 HIT zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 34
AciI CCGC 1 cut(s) 161
AcvI CACGTG 1 cut(s) 149
AluBI AGCT 2 cut(s) 135, 211
AluI AGCT 2 cut(s) 135, 211
Alw26I GTCTC 1 cut(s) 230
ApeKI GCWGC 2 cut(s) 132, 255
AspS9I GGNCC 3 cut(s) 12, 62, 164
AvaII GGWCC 3 cut(s) 12, 62, 164
BanI GGYRCC 1 cut(s) 34
BbrPI CACGTG 1 cut(s) 149
BbvI GCAGC 2 cut(s) 144, 267
BccI CCATC 2 cut(s) 45, 287
BcoDI GTCTC 1 cut(s) 230
BfaI CTAG 1 cut(s) 108
BisI GCNGC 2 cut(s) 133, 256
BlsI GCNGC 2 cut(s) 134, 257
Bme18I GGWCC 3 cut(s) 12, 62, 164
BmgT120I GGNCC 3 cut(s) 12, 62, 164
BmiI GGNNCC 3 cut(s) 36, 73, 165
BmsI GCATC 1 cut(s) 242
BpmI CTGGAG 1 cut(s) 212
BsaAI YACGTR 1 cut(s) 149
Bse118I RCCGGY 1 cut(s) 14
Bse1I ACTGG 3 cut(s) 36, 122, 229
BseNI ACTGG 3 cut(s) 36, 122, 229
BseRI GAGGAG 1 cut(s) 274
BseXI GCAGC 2 cut(s) 144, 267
BsgI GTGCAG 3 cut(s) 157, 241, 274
BshNI GGYRCC 1 cut(s) 34
BsiSI CCGG 1 cut(s) 15
BsmAI GTCTC 1 cut(s) 230
BsmI GAATGC 1 cut(s) 184
BspACI CCGC 1 cut(s) 161
BspLI GGNNCC 3 cut(s) 36, 73, 165
BspT107I GGYRCC 1 cut(s) 34
BsrFI RCCGGY 1 cut(s) 14
BsrI ACTGG 3 cut(s) 36, 122, 229
BssAI RCCGGY 1 cut(s) 14
Bst4CI ACNGT 2 cut(s) 46, 79
BstBAI YACGTR 1 cut(s) 149
BstC8I GCNNGC 1 cut(s) 270
BstMAI GTCTC 1 cut(s) 230
BstMWI GCNNNNNNNGC 1 cut(s) 15
BstV1I GCAGC 2 cut(s) 144, 267
BtsI GCAGTG 1 cut(s) 25
BtsIMutI CAGTG 5 cut(s) 25, 29, 42, 129, 236
Cac8I GCNNGC 1 cut(s) 270
Cfr10I RCCGGY 1 cut(s) 14
Cfr13I GGNCC 3 cut(s) 12, 62, 164
CviJI RGCY 3 cut(s) 135, 211, 258
CviKI_1 RGCY 3 cut(s) 135, 211, 258
Eco47I GGWCC 3 cut(s) 12, 62, 164
Eco72I CACGTG 1 cut(s) 149
EcoT22I ATGCAT 1 cut(s) 184
FaiI YATR 1 cut(s) 184
FauI CCCGC 1 cut(s) 154
Fnu4HI GCNGC 2 cut(s) 133, 256
Fsp4HI GCNGC 2 cut(s) 133, 256
FspBI CTAG 1 cut(s) 108
GluI GCNGC 2 cut(s) 133, 256
GsuI CTGGAG 1 cut(s) 212
HapII CCGG 1 cut(s) 15
HindIII AAGCTT 1 cut(s) 209
HinfI GANTC 1 cut(s) 197
HpaII CCGG 1 cut(s) 15
Hpy188I TCNGA 1 cut(s) 91
Hpy188III TCNNGA 2 cut(s) 194, 300
HpyCH4III ACNGT 2 cut(s) 46, 79
HpyCH4IV ACGT 1 cut(s) 148
HpyCH4V TGCA 7 cut(s) 4, 132, 174, 182, 222, 255, 291
HpyF10VI GCNNNNNNNGC 1 cut(s) 15
HpySE526I ACGT 1 cut(s) 148
LpnPI CCDG 5 cut(s) 17, 28, 135, 230, 242
Lsp1109I GCAGC 2 cut(s) 144, 267
LweI GCATC 1 cut(s) 242
MaeI CTAG 1 cut(s) 108
MaeII ACGT 1 cut(s) 148
MaeIII GTNAC 3 cut(s) 25, 79, 233
MfeI CAATTG 1 cut(s) 263
MluCI AATT 1 cut(s) 263
MnlI CCTC 3 cut(s) 150, 269, 295
Mph1103I ATGCAT 1 cut(s) 184
MspI CCGG 1 cut(s) 15
MunI CAATTG 1 cut(s) 263
Mva1269I GAATGC 1 cut(s) 184
MwoI GCNNNNNNNGC 1 cut(s) 15
NlaIV GGNNCC 3 cut(s) 36, 73, 165
NmuCI GTSAC 1 cut(s) 25
NsiI ATGCAT 1 cut(s) 184
PctI GAATGC 1 cut(s) 184
PfeI GAWTC 1 cut(s) 197
PkrI GCNGC 2 cut(s) 134, 257
PmaCI CACGTG 1 cut(s) 149
PmlI CACGTG 1 cut(s) 149
Ppu21I YACGTR 1 cut(s) 149
PspCI CACGTG 1 cut(s) 149
PspN4I GGNNCC 3 cut(s) 36, 73, 165
PspPI GGNCC 3 cut(s) 12, 62, 164
PsrI GAACNNNNNNTAC 2 cut(s) 64, 96
SatI GCNGC 2 cut(s) 133, 256
Sau96I GGNCC 3 cut(s) 12, 62, 164
SetI ASST 3 cut(s) 137, 151, 213
SfaNI GCATC 1 cut(s) 242
SinI GGWCC 3 cut(s) 12, 62, 164
Sse9I AATT 1 cut(s) 263
SsiI CCGC 1 cut(s) 161
SspI AATATT 1 cut(s) 97
SspMI CTAG 1 cut(s) 108
TaaI ACNGT 2 cut(s) 46, 79
TaiI ACGT 1 cut(s) 151
TaqI TCGA 2 cut(s) 49, 206
TaqII GACCGA 1 cut(s) 50
TasI AATT 1 cut(s) 263
TfiI GAWTC 1 cut(s) 197
TscAI CASTG 5 cut(s) 25, 36, 49, 129, 236
TseFI GTSAC 1 cut(s) 25
TseI GCWGC 2 cut(s) 132, 255
Tsp45I GTSAC 1 cut(s) 25
TspRI CASTG 5 cut(s) 25, 36, 49, 129, 236
VpaK11BI GGWCC 3 cut(s) 12, 62, 164
XspI CTAG 1 cut(s) 108
Zsp2I ATGCAT 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.