Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003469

Physical Location & Seq

Genomic Coordinates Reverse (-)

34710963 .. 34728023

Gene Structure 17061 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0199300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGCAGCAGAGAAGATTAGCATCATCAGGGAGGCCTACTGGAACAGATGGCTCAGATTTCAACTACCGCATGGTTGTTGACTCTCGGTATCAAAAAGTAGCTGATGGAAAATCTCGTCTCTATGCGCTTATTCTCACTCAGGCTGTCTTTCAGCTGATAGGAGTCCTATATACATTTCTTTTTACTTCCAAAGGGGAAGGTCCCGATGTGATTGCTATCTCTTCTATAGCTATTGGTTCAATTTCTTTGATACTTGGGGACTTGGGTCGAAGGCGTAGTCGAGTAACTTTGTTGAAAGTTTACATGGTTGCATCATCTATTGGAGTGCTTCTTTCCATTGCTTGTGTTGCCAAGGGGAATGTAACATTAGAGGTTTTCCAAACTCCCACTAGATGGGAAACACACAAGTTTGAACTTCTTGAGGCTGCTCGCACTGCAATTGGATTCCTGGTACAAATATTTACAGTGAGCACAATTACTTCTCTAATCAGTAACATGTCTCCACCGAAAAGAACCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0012505 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0048471 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04120 ko04141 ko05012 map04120 map04141 map05012

Pfam Domains

Protein Families

UQ_con

Protein Analysis

173

Amino Acids

18.94

Weight (kDa)

10.13

Isoelectric Point (pI)

42.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Jagunal	PF07086	11 - 53	1.5e-06	Jagunal, ER re-organisation during oogenesis

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003469)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g19541
prunus_persica	Prupe.1G120700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0424771 RchiOBHm_Chr4g0425191
rosa_laevigata	RLG00000007392 RLG00000007422 RLG00000007424 RLG00000007425 RLG00000007427 RLG00000007430 RLG00000007433 RLG00000020002 RLG00000035449
rosa_roxburghii	Rroxscaffold_4G00318800 Rroxscaffold_5G00366650 Rroxscaffold_5G00366780 Rroxscaffold_5G00366880 Rroxscaffold_5G00366990
rosa_rugosa	Rorug04G0199100 Rorug04G0199300
rosa_samantha	Rh4AG256300 Rh4AG256600 Rh4AG256700 Rh4BG261700 Rh4BG262100 Rh4CG272900 Rh4CG273000 Rh4CG273100 Rh4CG275600 Rh4DG256500 Rh4DG256600 Rh4DG256700 Rh4DG257000 Rh4DG257400 Rh4DG257500 Rh4DG257900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	393
AciI	CCGC	1 cut(s)	67
AfaI	GTAC	1 cut(s)	453
AfiI	CCNNNNNNNGG	1 cut(s)	393
AflIII	ACRYGT	1 cut(s)	495
AgsI	TTSAA	4 cut(s)	61, 240, 295, 413
AjnI	CCWGG	1 cut(s)	447
AluBI	AGCT	3 cut(s)	101, 154, 230
AluI	AGCT	3 cut(s)	101, 154, 230
Alw21I	GWGCWC	1 cut(s)	473
Alw26I	GTCTC	2 cut(s)	122, 504
AoxI	GGCC	1 cut(s)	32
ApeKI	GCWGC	2 cut(s)	4, 425
ArsI	GACNNNNNNTTYG	2 cut(s)	262, 294
AspLEI	GCGC	1 cut(s)	127
AspS9I	GGNCC	1 cut(s)	200
AvaII	GGWCC	1 cut(s)	200
Bbv12I	GWGCWC	1 cut(s)	473
BbvI	GCAGC	2 cut(s)	16, 412
BccI	CCATC	3 cut(s)	41, 98, 387
BcgI	CGANNNNNNTGC	2 cut(s)	194, 228
BciT130I	CCWGG	1 cut(s)	449
BcoDI	GTCTC	2 cut(s)	122, 504
BfaI	CTAG	1 cut(s)	390
BfmI	CTRYAG	1 cut(s)	225
BisI	GCNGC	2 cut(s)	5, 426
BlsI	GCNGC	2 cut(s)	6, 427
Bme1390I	CCNGG	1 cut(s)	449
Bme18I	GGWCC	1 cut(s)	200
BmgT120I	GGNCC	1 cut(s)	200
BmiI	GGNNCC	1 cut(s)	202
BmrFI	CCNGG	1 cut(s)	449
BmsI	GCATC	2 cut(s)	29, 320
BoxI	GACNNNNGTC	1 cut(s)	264
BpuEI	CTTGAG	1 cut(s)	440
BsaBI	GATNNNNATC	2 cut(s)	19, 215
BsaJI	CCNNGG	1 cut(s)	351
Bsc4I	CCNNNNNNNGG	1 cut(s)	393
Bse1I	ACTGG	1 cut(s)	43
Bse3DI	GCAATG	1 cut(s)	336
Bse8I	GATNNNNATC	2 cut(s)	19, 215
BseBI	CCWGG	1 cut(s)	449
BseDI	CCNNGG	1 cut(s)	351
BseJI	GATNNNNATC	2 cut(s)	19, 215
BseLI	CCNNNNNNNGG	1 cut(s)	393
BseMI	GCAATG	1 cut(s)	336
BseMII	CTCAG	2 cut(s)	66, 152
BseNI	ACTGG	1 cut(s)	43
BseXI	GCAGC	2 cut(s)	16, 412
BshFI	GGCC	1 cut(s)	34
BsiHKAI	GWGCWC	1 cut(s)	473
BslFI	GGGAC	2 cut(s)	186, 272
BslI	CCNNNNNNNGG	1 cut(s)	393
BsmAI	GTCTC	2 cut(s)	122, 504
BsmBI	CGTCTC	1 cut(s)	122
BsmFI	GGGAC	2 cut(s)	186, 272
BsnI	GGCC	1 cut(s)	34
Bsp1286I	GDGCHC	1 cut(s)	473
BspACI	CCGC	1 cut(s)	67
BspANI	GGCC	1 cut(s)	34
BspCNI	CTCAG	2 cut(s)	65, 151
BspLI	GGNNCC	1 cut(s)	202
BsrDI	GCAATG	1 cut(s)	336
BsrI	ACTGG	1 cut(s)	43
BssECI	CCNNGG	1 cut(s)	351
BssT1I	CCWWGG	1 cut(s)	351
Bst2UI	CCWGG	1 cut(s)	449
Bst4CI	ACNGT	1 cut(s)	466
Bst6I	CTCTTC	1 cut(s)	226
BstC8I	GCNNGC	1 cut(s)	430
BstDEI	CTNAG	3 cut(s)	52, 138, 519
BstHHI	GCGC	1 cut(s)	127
BstMAI	GTCTC	2 cut(s)	122, 504
BstMWI	GCNNNNNNNGC	2 cut(s)	347, 434
BstNI	CCWGG	1 cut(s)	449
BstNSI	RCATGY	1 cut(s)	499
BstPAI	GACNNNNGTC	1 cut(s)	264
BstSCI	CCNGG	1 cut(s)	447
BstSFI	CTRYAG	1 cut(s)	225
BstV1I	GCAGC	2 cut(s)	16, 412
BsuRI	GGCC	1 cut(s)	34
BtsI	GCAGTG	1 cut(s)	432
BtsIMutI	CAGTG	2 cut(s)	432, 471
Cac8I	GCNNGC	1 cut(s)	430
CfoI	GCGC	1 cut(s)	127
Cfr13I	GGNCC	1 cut(s)	200
Csp6I	GTAC	1 cut(s)	452
CviAII	CATG	3 cut(s)	70, 304, 496
CviJI	RGCY	7 cut(s)	34, 51, 101, 143, 154, 230, 425
CviKI_1	RGCY	7 cut(s)	34, 51, 101, 143, 154, 230, 425
CviQI	GTAC	1 cut(s)	452
DdeI	CTNAG	3 cut(s)	52, 138, 519
Eam1104I	CTCTTC	1 cut(s)	226
EarI	CTCTTC	1 cut(s)	226
Eco130I	CCWWGG	1 cut(s)	351
Eco147I	AGGCCT	1 cut(s)	34
Eco47I	GGWCC	1 cut(s)	200
EcoO109I	RGGNCCY	1 cut(s)	200
EcoRII	CCWGG	1 cut(s)	447
EcoT14I	CCWWGG	1 cut(s)	351
ErhI	CCWWGG	1 cut(s)	351
Esp3I	CGTCTC	1 cut(s)	122
FaeI	CATG	3 cut(s)	73, 307, 499
FaiI	YATR	7 cut(s)	71, 123, 169, 171, 227, 305, 497
FalI	AAGNNNNNCTT	1 cut(s)	502
FaqI	GGGAC	2 cut(s)	186, 272
FatI	CATG	3 cut(s)	69, 303, 495
Fnu4HI	GCNGC	2 cut(s)	5, 426
Fsp4HI	GCNGC	2 cut(s)	5, 426
FspBI	CTAG	1 cut(s)	390
GlaI	GCGC	1 cut(s)	126
GluI	GCNGC	2 cut(s)	5, 426
HaeIII	GGCC	1 cut(s)	34
HhaI	GCGC	1 cut(s)	127
Hin1II	CATG	3 cut(s)	73, 307, 499
Hin6I	GCGC	1 cut(s)	125
HinP1I	GCGC	1 cut(s)	125
HincII	GTYRAC	1 cut(s)	79
HindII	GTYRAC	1 cut(s)	79
HinfI	GANTC	3 cut(s)	80, 162, 444
Hpy166II	GTNNAC	2 cut(s)	79, 301
Hpy188I	TCNGA	1 cut(s)	55
Hpy188III	TCNNGA	2 cut(s)	203, 419
Hpy8I	GTNNAC	2 cut(s)	79, 301
HpyAV	CCTTC	2 cut(s)	191, 264
HpyCH4III	ACNGT	1 cut(s)	466
HpyCH4V	TGCA	3 cut(s)	4, 311, 437
HpyF10VI	GCNNNNNNNGC	2 cut(s)	347, 434
HpyF3I	CTNAG	3 cut(s)	52, 138, 519
Hsp92II	CATG	3 cut(s)	73, 307, 499
HspAI	GCGC	1 cut(s)	125
LpnPI	CCDG	5 cut(s)	12, 24, 125, 434, 461
Lsp1109I	GCAGC	2 cut(s)	16, 412
LweI	GCATC	2 cut(s)	29, 320
MaeI	CTAG	1 cut(s)	390
MaeIII	GTNAC	3 cut(s)	283, 361, 491
MboII	GAAGA	2 cut(s)	24, 213
MfeI	CAATTG	1 cut(s)	438
MhlI	GDGCHC	1 cut(s)	473
MluCI	AATT	3 cut(s)	240, 438, 474
MlyI	GAGTC	2 cut(s)	74, 171
MnlI	CCTC	3 cut(s)	24, 364, 415
MspA1I	CMGCKG	1 cut(s)	154
MspR9I	CCNGG	1 cut(s)	449
MunI	CAATTG	1 cut(s)	438
MvaI	CCWGG	1 cut(s)	449
MwoI	GCNNNNNNNGC	2 cut(s)	347, 434
NlaIII	CATG	3 cut(s)	73, 307, 499
NlaIV	GGNNCC	1 cut(s)	202
NspI	RCATGY	1 cut(s)	499
PceI	AGGCCT	1 cut(s)	34
PciI	ACATGT	1 cut(s)	495
PfeI	GAWTC	1 cut(s)	444
PflMI	CCANNNNNTGG	1 cut(s)	393
PkrI	GCNGC	2 cut(s)	6, 427
PleI	GAGTC	2 cut(s)	74, 170
PpsI	GAGTC	2 cut(s)	74, 170
PpuMI	RGGWCCY	1 cut(s)	200
PscI	ACATGT	1 cut(s)	495
PshAI	GACNNNNGTC	1 cut(s)	264
Psp5II	RGGWCCY	1 cut(s)	200
Psp6I	CCWGG	1 cut(s)	447
PspGI	CCWGG	1 cut(s)	447
PspN4I	GGNNCC	1 cut(s)	202
PspPI	GGNCC	1 cut(s)	200
PspPPI	RGGWCCY	1 cut(s)	200
PvuII	CAGCTG	1 cut(s)	154
RsaI	GTAC	1 cut(s)	453
RsaNI	GTAC	1 cut(s)	452
SatI	GCNGC	2 cut(s)	5, 426
Sau96I	GGNCC	1 cut(s)	200
SchI	GAGTC	2 cut(s)	74, 171
ScrFI	CCNGG	1 cut(s)	449
SduI	GDGCHC	1 cut(s)	473
SetI	ASST	6 cut(s)	103, 156, 202, 232, 375, 518
SfaNI	GCATC	2 cut(s)	29, 320
SfcI	CTRYAG	1 cut(s)	225
SinI	GGWCC	1 cut(s)	200
SmlI	CTYRAG	1 cut(s)	419
SmoI	CTYRAG	1 cut(s)	419
Sse9I	AATT	3 cut(s)	240, 438, 474
SseBI	AGGCCT	1 cut(s)	34
SsiI	CCGC	1 cut(s)	67
SspI	AATATT	1 cut(s)	459
SspMI	CTAG	1 cut(s)	390
StuI	AGGCCT	1 cut(s)	34
StyD4I	CCNGG	1 cut(s)	447
StyI	CCWWGG	1 cut(s)	351
TaaI	ACNGT	1 cut(s)	466
TaqI	TCGA	2 cut(s)	268, 280
TasI	AATT	3 cut(s)	240, 438, 474
TfiI	GAWTC	1 cut(s)	444
TscAI	CASTG	2 cut(s)	439, 471
TseI	GCWGC	2 cut(s)	4, 425
TspRI	CASTG	2 cut(s)	439, 471
Van91I	CCANNNNNTGG	1 cut(s)	393
VpaK11BI	GGWCC	1 cut(s)	200
XceI	RCATGY	1 cut(s)	499
XspI	CTAG	1 cut(s)	390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.