Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003469

Physical Location & Seq

Genomic Coordinates Reverse (-)

48966514 .. 48971960

Gene Structure 5447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00366990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGCGGGGCGATTACCACGCCGGGGACTCGAGGAGGAAGGTCGGTTTCGTTAGCAGCCTTCATCCGTACGAGTCAAGGCCTGCTAATTGGAGAGACAAAGATGATCTAAGACCGGGGGACTTCAAATTCGAACTTGGTCGAGGTATGCTAGCCGTGGCAGCATCAATTGATAAATTGAAAGAGATCATTTTACACAATGTTCCTGTTTCCTATACGGAGAAGATTGTAAACGAAGTTGTCCTGATTATTGGTGGTCTTCAAGTCCTTCAACATAACATGTGGATTGATGTACCCCCTGTACCGGGTGCCCTAGTGGTTAACATTGGAGGATTATGTGATATGGACAAAGTTCATCGAAATGTATCAAAAGTGAAAATGGCATCAAACCGGAAGCGAGAGAATTCTGATGAATCCAAAGACGTCCTCGTCGTGCATGAACTTGGCGAGGGCTCAGGGCCACAACAGCCTGCTTCTCAGAAAGGCAAAGGTGAGCAAAAGAAGAACGGTAAAGGTGAGCAAAAGAAGAACGGCAAAGGTGAGCAAAAGACGAATGGCAATAAGAAAAAGGAAGGCAAAGGGAATGCTGATGCTATCACGGTTCAGGACAACGAAATCAATAATCAAGGTACAGCTAAAAATGTCGGAGTTTTTGGATTTGCTAACAAGCAGTATTATGGCCCCAAAGAGTTAGGTGATGAAGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

234

Amino Acids

25.64

Weight (kDa)

9.2

Isoelectric Point (pI)

34.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003469)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g19541
prunus_persica	Prupe.1G120700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0424771 RchiOBHm_Chr4g0425191
rosa_laevigata	RLG00000007392 RLG00000007422 RLG00000007424 RLG00000007425 RLG00000007427 RLG00000007430 RLG00000007433 RLG00000020002 RLG00000035449
rosa_roxburghii	Rroxscaffold_4G00318800 Rroxscaffold_5G00366650 Rroxscaffold_5G00366780 Rroxscaffold_5G00366880 Rroxscaffold_5G00366990
rosa_rugosa	Rorug04G0199100 Rorug04G0199300
rosa_samantha	Rh4AG256300 Rh4AG256600 Rh4AG256700 Rh4BG261700 Rh4BG262100 Rh4CG272900 Rh4CG273000 Rh4CG273100 Rh4CG275600 Rh4DG256500 Rh4DG256600 Rh4DG256700 Rh4DG257000 Rh4DG257400 Rh4DG257500 Rh4DG257900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	425
AatII	GACGTC	1 cut(s)	423
AccB1I	GGYRCC	1 cut(s)	305
AciI	CCGC	1 cut(s)	4
AcsI	RAATTY	2 cut(s)	125, 400
AcyI	GRCGYC	1 cut(s)	420
AfaI	GTAC	4 cut(s)	68, 291, 300, 628
AfiI	CCNNNNNNNGG	3 cut(s)	22, 301, 302
AflIII	ACRYGT	1 cut(s)	276
AgsI	TTSAA	4 cut(s)	124, 178, 260, 269
AluBI	AGCT	1 cut(s)	632
AluI	AGCT	1 cut(s)	632
Alw26I	GTCTC	1 cut(s)	87
Ama87I	CYCGRG	1 cut(s)	28
AoxI	GGCC	3 cut(s)	77, 455, 676
ApeKI	GCWGC	2 cut(s)	54, 158
ApoI	RAATTY	2 cut(s)	125, 400
ArsI	GACNNNNNNTTYG	2 cut(s)	110, 142
AspS9I	GGNCC	2 cut(s)	455, 677
AsuC2I	CCSGG	3 cut(s)	22, 114, 303
AsuHPI	GGTGA	4 cut(s)	500, 524, 548, 704
AsuII	TTCGAA	1 cut(s)	129
AsuNHI	GCTAGC	1 cut(s)	148
AvaI	CYCGRG	1 cut(s)	28
BaeGI	GKGCMC	1 cut(s)	310
BanI	GGYRCC	1 cut(s)	305
BanII	GRGCYC	1 cut(s)	452
BbsI	GAAGAC	1 cut(s)	248
BbvI	GCAGC	2 cut(s)	66, 170
BceAI	ACGGC	2 cut(s)	137, 544
BcnI	CCSGG	3 cut(s)	22, 114, 303
BcoDI	GTCTC	1 cut(s)	87
BfaI	CTAG	2 cut(s)	149, 311
BisI	GCNGC	2 cut(s)	55, 159
BlsI	GCNGC	2 cut(s)	56, 160
Bme1390I	CCNGG	3 cut(s)	22, 114, 303
BmeT110I	CYCGRG	1 cut(s)	28
BmgT120I	GGNCC	2 cut(s)	455, 677
BmiI	GGNNCC	2 cut(s)	307, 679
BmrFI	CCNGG	3 cut(s)	22, 114, 303
BmsI	GCATC	3 cut(s)	170, 389, 577
BmtI	GCTAGC	1 cut(s)	152
BpiI	GAAGAC	1 cut(s)	248
Bpu10I	CCTNAGC	1 cut(s)	451
Bpu14I	TTCGAA	1 cut(s)	129
BpuMI	CCSGG	3 cut(s)	22, 114, 303
BsaHI	GRCGYC	1 cut(s)	420
BsaJI	CCNNGG	3 cut(s)	21, 113, 153
BsaWI	WCCGGW	1 cut(s)	387
Bsc4I	CCNNNNNNNGG	3 cut(s)	22, 301, 302
BseDI	CCNNGG	3 cut(s)	21, 113, 153
BseGI	GGATG	1 cut(s)	61
BseLI	CCNNNNNNNGG	3 cut(s)	22, 301, 302
BseMII	CTCAG	2 cut(s)	465, 488
BseRI	GAGGAG	1 cut(s)	46
BseSI	GKGCMC	1 cut(s)	310
BseXI	GCAGC	2 cut(s)	66, 170
BshFI	GGCC	3 cut(s)	79, 457, 678
BshNI	GGYRCC	1 cut(s)	305
BsiHKCI	CYCGRG	1 cut(s)	28
BsiSI	CCGG	4 cut(s)	21, 113, 302, 388
BsiWI	CGTACG	1 cut(s)	66
BslFI	GGGAC	2 cut(s)	38, 131
BslI	CCNNNNNNNGG	3 cut(s)	22, 301, 302
BsmAI	GTCTC	1 cut(s)	87
BsmFI	GGGAC	2 cut(s)	38, 131
BsmI	GAATGC	1 cut(s)	586
BsnI	GGCC	3 cut(s)	79, 457, 678
BsoBI	CYCGRG	1 cut(s)	28
Bsp119I	TTCGAA	1 cut(s)	129
Bsp1286I	GDGCHC	2 cut(s)	310, 452
Bsp143I	GATC	2 cut(s)	103, 183
BspACI	CCGC	1 cut(s)	4
BspANI	GGCC	3 cut(s)	79, 457, 678
BspCNI	CTCAG	2 cut(s)	464, 487
BspLI	GGNNCC	2 cut(s)	307, 679
BspOI	GCTAGC	1 cut(s)	152
BspT104I	TTCGAA	1 cut(s)	129
BspT107I	GGYRCC	1 cut(s)	305
BssECI	CCNNGG	3 cut(s)	21, 113, 153
BssMI	GATC	2 cut(s)	103, 183
BssNI	GRCGYC	1 cut(s)	420
Bst4CI	ACNGT	2 cut(s)	506, 598
BstACI	GRCGYC	1 cut(s)	420
BstBI	TTCGAA	1 cut(s)	129
BstC8I	GCNNGC	3 cut(s)	81, 150, 468
BstDEI	CTNAG	3 cut(s)	107, 451, 474
BstDSI	CCRYGG	1 cut(s)	153
BstF5I	GGATG	1 cut(s)	61
BstKTI	GATC	2 cut(s)	106, 186
BstMAI	GTCTC	1 cut(s)	87
BstMBI	GATC	2 cut(s)	103, 183
BstMWI	GCNNNNNNNGC	2 cut(s)	158, 463
BstNSI	RCATGY	1 cut(s)	280
BstSCI	CCNGG	3 cut(s)	20, 112, 301
BstSLI	GKGCMC	1 cut(s)	310
BstV1I	GCAGC	2 cut(s)	66, 170
BstV2I	GAAGAC	1 cut(s)	248
BsuRI	GGCC	3 cut(s)	79, 457, 678
BtgI	CCRYGG	1 cut(s)	153
BtsCI	GGATG	1 cut(s)	61
Cac8I	GCNNGC	3 cut(s)	81, 150, 468
Cfr13I	GGNCC	2 cut(s)	455, 677
Csp6I	GTAC	4 cut(s)	67, 290, 299, 627
CviAII	CATG	2 cut(s)	277, 434
CviJI	RGCY	8 cut(s)	57, 79, 152, 450, 457, 466, 632, 678
CviKI_1	RGCY	8 cut(s)	57, 79, 152, 450, 457, 466, 632, 678
CviQI	GTAC	4 cut(s)	67, 290, 299, 627
DdeI	CTNAG	3 cut(s)	107, 451, 474
DpnI	GATC	2 cut(s)	105, 185
DpnII	GATC	2 cut(s)	103, 183
DrdI	GACNNNNNNGTC	1 cut(s)	425
DseDI	GACNNNNNNGTC	1 cut(s)	425
Eco147I	AGGCCT	1 cut(s)	79
Eco24I	GRGCYC	1 cut(s)	452
Eco88I	CYCGRG	1 cut(s)	28
EcoRI	GAATTC	1 cut(s)	400
EcoT38I	GRGCYC	1 cut(s)	452
FaeI	CATG	2 cut(s)	280, 437
FaiI	YATR	8 cut(s)	146, 213, 273, 278, 334, 341, 435, 675
FaqI	GGGAC	2 cut(s)	38, 131
FatI	CATG	2 cut(s)	276, 433
Fnu4HI	GCNGC	2 cut(s)	55, 159
FokI	GGATG	1 cut(s)	48
FriOI	GRGCYC	1 cut(s)	452
Fsp4HI	GCNGC	2 cut(s)	55, 159
FspBI	CTAG	2 cut(s)	149, 311
GluI	GCNGC	2 cut(s)	55, 159
HaeIII	GGCC	3 cut(s)	79, 457, 678
HapII	CCGG	4 cut(s)	21, 113, 302, 388
Hin1I	GRCGYC	1 cut(s)	420
Hin1II	CATG	2 cut(s)	280, 437
HincII	GTYRAC	1 cut(s)	319
HindII	GTYRAC	1 cut(s)	319
HinfI	GANTC	3 cut(s)	26, 71, 410
HpaI	GTTAAC	1 cut(s)	319
HpaII	CCGG	4 cut(s)	21, 113, 302, 388
HphI	GGTGA	4 cut(s)	500, 524, 548, 704
Hpy166II	GTNNAC	2 cut(s)	229, 319
Hpy188I	TCNGA	3 cut(s)	406, 477, 644
Hpy188III	TCNNGA	2 cut(s)	241, 602
Hpy8I	GTNNAC	2 cut(s)	229, 319
Hpy99I	CGWCG	1 cut(s)	431
HpyAV	CCTTC	4 cut(s)	31, 68, 275, 563
HpyCH4III	ACNGT	2 cut(s)	506, 598
HpyCH4IV	ACGT	1 cut(s)	420
HpyCH4V	TGCA	1 cut(s)	433
HpyF10VI	GCNNNNNNNGC	2 cut(s)	158, 463
HpyF3I	CTNAG	3 cut(s)	107, 451, 474
HpySE526I	ACGT	1 cut(s)	420
Hsp92I	GRCGYC	1 cut(s)	420
Hsp92II	CATG	2 cut(s)	280, 437
KspAI	GTTAAC	1 cut(s)	319
Kzo9I	GATC	2 cut(s)	103, 183
Lsp1109I	GCAGC	2 cut(s)	66, 170
LweI	GCATC	3 cut(s)	170, 389, 577
MaeI	CTAG	2 cut(s)	149, 311
MaeII	ACGT	1 cut(s)	420
MalI	GATC	2 cut(s)	105, 185
MboI	GATC	2 cut(s)	103, 183
MboII	GAAGA	4 cut(s)	232, 248, 511, 535
MfeI	CAATTG	1 cut(s)	165
MhlI	GDGCHC	2 cut(s)	310, 452
MluCI	AATT	5 cut(s)	85, 125, 165, 173, 400
MlyI	GAGTC	2 cut(s)	20, 80
MmeI	TCCRAC	1 cut(s)	622
MnlI	CCTC	6 cut(s)	24, 27, 134, 320, 434, 439
MseI	TTAA	1 cut(s)	318
MslI	CAYNNNNRTG	1 cut(s)	357
MspI	CCGG	4 cut(s)	21, 113, 302, 388
MspR9I	CCNGG	3 cut(s)	22, 114, 303
MunI	CAATTG	1 cut(s)	165
Mva1269I	GAATGC	1 cut(s)	586
MwoI	GCNNNNNNNGC	2 cut(s)	158, 463
NciI	CCSGG	3 cut(s)	22, 114, 303
NdeII	GATC	2 cut(s)	103, 183
NheI	GCTAGC	1 cut(s)	148
NlaIII	CATG	2 cut(s)	280, 437
NlaIV	GGNNCC	2 cut(s)	307, 679
NspI	RCATGY	1 cut(s)	280
NspV	TTCGAA	1 cut(s)	129
PaeR7I	CTCGAG	1 cut(s)	28
PceI	AGGCCT	1 cut(s)	79
PciI	ACATGT	1 cut(s)	276
PcsI	WCGNNNNNNNCGW	1 cut(s)	426
PctI	GAATGC	1 cut(s)	586
PfeI	GAWTC	1 cut(s)	410
Pfl23II	CGTACG	1 cut(s)	66
PkrI	GCNGC	2 cut(s)	56, 160
PleI	GAGTC	2 cut(s)	20, 79
PpsI	GAGTC	2 cut(s)	20, 79
PscI	ACATGT	1 cut(s)	276
PspLI	CGTACG	1 cut(s)	66
PspN4I	GGNNCC	2 cut(s)	307, 679
PspPI	GGNCC	2 cut(s)	455, 677
PspXI	VCTCGAGB	1 cut(s)	28
RsaI	GTAC	4 cut(s)	68, 291, 300, 628
RsaNI	GTAC	4 cut(s)	67, 290, 299, 627
RseI	CAYNNNNRTG	1 cut(s)	357
SaqAI	TTAA	1 cut(s)	318
SatI	GCNGC	2 cut(s)	55, 159
Sau3AI	GATC	2 cut(s)	103, 183
Sau96I	GGNCC	2 cut(s)	455, 677
SchI	GAGTC	2 cut(s)	20, 80
ScrFI	CCNGG	3 cut(s)	22, 114, 303
SduI	GDGCHC	2 cut(s)	310, 452
SetI	ASST	9 cut(s)	42, 145, 423, 490, 514, 538, 628, 634, 694
SfaNI	GCATC	3 cut(s)	170, 389, 577
Sfr274I	CTCGAG	1 cut(s)	28
SfuI	TTCGAA	1 cut(s)	129
SlaI	CTCGAG	1 cut(s)	28
SmiMI	CAYNNNNRTG	1 cut(s)	357
SmlI	CTYRAG	1 cut(s)	28
SmoI	CTYRAG	1 cut(s)	28
Sse9I	AATT	5 cut(s)	85, 125, 165, 173, 400
SseBI	AGGCCT	1 cut(s)	79
SsiI	CCGC	1 cut(s)	4
SspMI	CTAG	2 cut(s)	149, 311
StuI	AGGCCT	1 cut(s)	79
StyD4I	CCNGG	3 cut(s)	20, 112, 301
TaaI	ACNGT	2 cut(s)	506, 598
TaiI	ACGT	1 cut(s)	423
TaqI	TCGA	4 cut(s)	29, 129, 139, 355
TasI	AATT	5 cut(s)	85, 125, 165, 173, 400
TfiI	GAWTC	1 cut(s)	410
Tru1I	TTAA	1 cut(s)	318
Tru9I	TTAA	1 cut(s)	318
TseI	GCWGC	2 cut(s)	54, 158
TspDTI	ATGAA	4 cut(s)	50, 341, 423, 450
TspGWI	ACGGA	2 cut(s)	54, 230
XapI	RAATTY	2 cut(s)	125, 400
XceI	RCATGY	1 cut(s)	280
XhoI	CTCGAG	1 cut(s)	28
XspI	CTAG	2 cut(s)	149, 311
ZraI	GACGTC	1 cut(s)	421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.