Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003469

Physical Location & Seq

Genomic Coordinates Reverse (-)

48830979 .. 48837571

Gene Structure 6593 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00366880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGTCCGTGGTGCCAAACCCTATCGCAAACTCCAAATTTTCCCCCAACATATCTCCACCTAGAAATCTTAATAAGGCTCCCAGTAAAATCTCTCATTCGGTTTCAATACGTATGCAAGTGGTGGACGAGTTTGATTCGCAGCTCAAGTTTTGTGACAACACATATCAGACAACATTGGTTCTAATTACGGATGACGTACCGCTCAAGGACAAAGTTCATCGAAATGCATCAAAATTGAAAATGGCATCAGGCCGGAAGCAAGAAGGTTCTTCTACATCCAAAGTCATCCTGCACACCGTGGATGAAAGGGGCAAGGGCTCAGACCCACCACAACCTGCTTCTGAGAACGGCAAAGGTGAGAAAAAGAAGAACGGCATAGTTGAGCAAAAGGAAAACGGCAAAGGTGAGCGAAAGACGAATGACAATAAGAAAAAGGAAGGCAAAGGGAACGCTGATGCTATCACGGTTCAGGGCAACGAAATCAATAATCAAGGTAGAGCTAAAAGTGTCGGAGTTTTTGGATTTGCTAACAAGCAGTATTATGGCCGCAAAGAGTCAGGTGATGAAGAAGAAGGTGACTCCGGTGATGAAGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

198

Amino Acids

21.56

Weight (kDa)

9.14

Isoelectric Point (pI)

33.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003469)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g19541
prunus_persica	Prupe.1G120700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0424771 RchiOBHm_Chr4g0425191
rosa_laevigata	RLG00000007392 RLG00000007422 RLG00000007424 RLG00000007425 RLG00000007427 RLG00000007430 RLG00000007433 RLG00000020002 RLG00000035449
rosa_roxburghii	Rroxscaffold_4G00318800 Rroxscaffold_5G00366650 Rroxscaffold_5G00366780 Rroxscaffold_5G00366880 Rroxscaffold_5G00366990
rosa_rugosa	Rorug04G0199100 Rorug04G0199300
rosa_samantha	Rh4AG256300 Rh4AG256600 Rh4AG256700 Rh4BG261700 Rh4BG262100 Rh4CG272900 Rh4CG273000 Rh4CG273100 Rh4CG275600 Rh4DG256500 Rh4DG256600 Rh4DG256700 Rh4DG257000 Rh4DG257400 Rh4DG257500 Rh4DG257900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	343
AccB1I	GGYRCC	1 cut(s)	10
AccBSI	CCGCTC	1 cut(s)	202
AciI	CCGC	2 cut(s)	200, 547
AcoI	YGGCCR	1 cut(s)	544
AcsI	RAATTY	1 cut(s)	35
AdeI	CACNNNGTG	1 cut(s)	298
AfaI	GTAC	1 cut(s)	198
AgsI	TTSAA	2 cut(s)	105, 238
AluBI	AGCT	2 cut(s)	142, 500
AluI	AGCT	2 cut(s)	142, 500
AoxI	GGCC	2 cut(s)	250, 544
ApeKI	GCWGC	1 cut(s)	139
ApoI	RAATTY	1 cut(s)	35
AsuHPI	GGTGA	5 cut(s)	368, 416, 572, 587, 596
BanI	GGYRCC	1 cut(s)	10
BanII	GRGCYC	1 cut(s)	320
BbvI	GCAGC	1 cut(s)	151
BceAI	ACGGC	3 cut(s)	364, 388, 412
BfaI	CTAG	1 cut(s)	60
BfuAI	ACCTGC	1 cut(s)	343
BisI	GCNGC	2 cut(s)	140, 547
BlsI	GCNGC	2 cut(s)	141, 548
BmiI	GGNNCC	2 cut(s)	12, 78
BmrI	ACTGGG	1 cut(s)	75
BmsI	GCATC	3 cut(s)	236, 254, 445
BmuI	ACTGGG	1 cut(s)	75
BpuEI	CTTGAG	2 cut(s)	128, 188
BsaAI	YACGTR	1 cut(s)	110
BsaJI	CCNNGG	2 cut(s)	6, 297
BsaWI	WCCGGW	1 cut(s)	581
Bse1I	ACTGG	1 cut(s)	81
BseDI	CCNNGG	2 cut(s)	6, 297
BseGI	GGATG	4 cut(s)	196, 275, 285, 307
BseMII	CTCAG	2 cut(s)	333, 333
BseNI	ACTGG	1 cut(s)	81
BseXI	GCAGC	1 cut(s)	151
BsgI	GTGCAG	1 cut(s)	275
BshFI	GGCC	2 cut(s)	252, 546
BshNI	GGYRCC	1 cut(s)	10
BsiSI	CCGG	2 cut(s)	253, 582
BsnI	GGCC	2 cut(s)	252, 546
Bsp1286I	GDGCHC	1 cut(s)	320
BspACI	CCGC	2 cut(s)	200, 547
BspANI	GGCC	2 cut(s)	252, 546
BspCNI	CTCAG	2 cut(s)	332, 334
BspLI	GGNNCC	2 cut(s)	12, 78
BspMI	ACCTGC	1 cut(s)	343
BspT107I	GGYRCC	1 cut(s)	10
BsrBI	CCGCTC	1 cut(s)	202
BsrI	ACTGG	1 cut(s)	81
BssECI	CCNNGG	2 cut(s)	6, 297
Bst4CI	ACNGT	2 cut(s)	298, 466
BstBAI	YACGTR	1 cut(s)	110
BstDEI	CTNAG	2 cut(s)	319, 342
BstDSI	CCRYGG	2 cut(s)	6, 297
BstF5I	GGATG	4 cut(s)	196, 275, 285, 307
BstSNI	TACGTA	1 cut(s)	110
BstV1I	GCAGC	1 cut(s)	151
BsuRI	GGCC	2 cut(s)	252, 546
BtgI	CCRYGG	2 cut(s)	6, 297
BtsCI	GGATG	4 cut(s)	196, 275, 285, 307
BveI	ACCTGC	1 cut(s)	343
Csp6I	GTAC	1 cut(s)	197
CviJI	RGCY	6 cut(s)	77, 142, 252, 318, 500, 546
CviKI_1	RGCY	6 cut(s)	77, 142, 252, 318, 500, 546
CviQI	GTAC	1 cut(s)	197
DdeI	CTNAG	2 cut(s)	319, 342
DraIII	CACNNNGTG	1 cut(s)	298
EaeI	YGGCCR	1 cut(s)	544
Eco105I	TACGTA	1 cut(s)	110
Eco24I	GRGCYC	1 cut(s)	320
EcoT22I	ATGCAT	1 cut(s)	229
EcoT38I	GRGCYC	1 cut(s)	320
FaiI	YATR	5 cut(s)	50, 113, 163, 377, 543
Fnu4HI	GCNGC	2 cut(s)	140, 547
FokI	GGATG	4 cut(s)	203, 262, 272, 314
FriOI	GRGCYC	1 cut(s)	320
Fsp4HI	GCNGC	2 cut(s)	140, 547
FspBI	CTAG	1 cut(s)	60
GluI	GCNGC	2 cut(s)	140, 547
HaeIII	GGCC	2 cut(s)	252, 546
HapII	CCGG	2 cut(s)	253, 582
HinfI	GANTC	3 cut(s)	134, 554, 578
HpaII	CCGG	2 cut(s)	253, 582
HphI	GGTGA	5 cut(s)	368, 416, 572, 587, 596
Hpy166II	GTNNAC	1 cut(s)	124
Hpy188I	TCNGA	4 cut(s)	168, 322, 343, 512
Hpy8I	GTNNAC	1 cut(s)	124
HpyAV	CCTTC	3 cut(s)	257, 431, 566
HpyCH4III	ACNGT	2 cut(s)	298, 466
HpyCH4IV	ACGT	2 cut(s)	109, 195
HpyCH4V	TGCA	3 cut(s)	115, 227, 292
HpyF3I	CTNAG	2 cut(s)	319, 342
HpySE526I	ACGT	2 cut(s)	109, 195
LmnI	GCTCC	1 cut(s)	82
LpnPI	CCDG	7 cut(s)	94, 234, 266, 302, 348, 455, 543
Lsp1109I	GCAGC	1 cut(s)	151
LweI	GCATC	3 cut(s)	236, 254, 445
MaeI	CTAG	1 cut(s)	60
MaeII	ACGT	2 cut(s)	109, 195
MaeIII	GTNAC	2 cut(s)	152, 575
MbiI	CCGCTC	1 cut(s)	202
MboII	GAAGA	4 cut(s)	261, 379, 578, 581
MhlI	GDGCHC	1 cut(s)	320
MluCI	AATT	3 cut(s)	35, 183, 233
MlyI	GAGTC	2 cut(s)	563, 572
MmeI	TCCRAC	1 cut(s)	490
Mph1103I	ATGCAT	1 cut(s)	229
MseI	TTAA	1 cut(s)	69
MslI	CAYNNNNRTG	1 cut(s)	222
MspI	CCGG	2 cut(s)	253, 582
NlaIV	GGNNCC	2 cut(s)	12, 78
NmuCI	GTSAC	2 cut(s)	152, 575
NsiI	ATGCAT	1 cut(s)	229
PfeI	GAWTC	1 cut(s)	134
PkrI	GCNGC	2 cut(s)	141, 548
PleI	GAGTC	2 cut(s)	562, 572
PpsI	GAGTC	2 cut(s)	562, 572
Ppu21I	YACGTR	1 cut(s)	110
PspN4I	GGNNCC	2 cut(s)	12, 78
RsaI	GTAC	1 cut(s)	198
RsaNI	GTAC	1 cut(s)	197
RseI	CAYNNNNRTG	1 cut(s)	222
SaqAI	TTAA	1 cut(s)	69
SatI	GCNGC	2 cut(s)	140, 547
SchI	GAGTC	2 cut(s)	563, 572
SduI	GDGCHC	1 cut(s)	320
SfaNI	GCATC	3 cut(s)	236, 254, 445
SmiMI	CAYNNNNRTG	1 cut(s)	222
SmlI	CTYRAG	2 cut(s)	143, 203
SmoI	CTYRAG	2 cut(s)	143, 203
SnaBI	TACGTA	1 cut(s)	110
Sse9I	AATT	3 cut(s)	35, 183, 233
SsiI	CCGC	2 cut(s)	200, 547
SspMI	CTAG	1 cut(s)	60
TaaI	ACNGT	2 cut(s)	298, 466
TaiI	ACGT	2 cut(s)	112, 198
TaqI	TCGA	1 cut(s)	220
TasI	AATT	3 cut(s)	35, 183, 233
TauI	GCSGC	1 cut(s)	549
TfiI	GAWTC	1 cut(s)	134
Tru1I	TTAA	1 cut(s)	69
Tru9I	TTAA	1 cut(s)	69
TseFI	GTSAC	2 cut(s)	152, 575
TseI	GCWGC	1 cut(s)	139
Tsp45I	GTSAC	2 cut(s)	152, 575
TspDTI	ATGAA	3 cut(s)	206, 318, 579
TspGWI	ACGGA	1 cut(s)	203
XapI	RAATTY	1 cut(s)	35
XspI	CTAG	1 cut(s)	60
Zsp2I	ATGCAT	1 cut(s)	229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.