Prupe.1G120700_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0003469
Physical Location & Seq
Forward (+)
9478920 .. 9479430
511 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G120700.1

Sequence Viewer

Length: 327 bp
ATGTCGACTGGCAACCTATTTCTAAAGCCTGACTTGGAGAACCAAAACAGCAGGTTCTCGAGGCCACCAGGTTATGCCCCCCAGCCAGCAGCTGCTTCCAACAGCAATGGAAAAAGTGGCAGCAAAGCAAAGAGTGGCTCTAAGAAAAAGAAAGGCAAGCCATCAGGCGATAATTTCAGAATTAGTGGGAATACTATTAACGGAGGCAAAGCCGACAAGGCCGGAGTTTTCGGGTTTGGCAACAAGTACATTGGCCGCAAGAAACAGATAGAAGAGGAGTCCAGTTCTGGAAGCGAAAGCGATGACTCCAGTGAAGACAGAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

11.39

Weight (kDa)

9.65

Isoelectric Point (pI)

46.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 42
AccI GTMKAC 1 cut(s) 5
AciI CCGC 1 cut(s) 256
AcoI YGGCCR 1 cut(s) 253
AfaI GTAC 1 cut(s) 248
AjnI CCWGG 1 cut(s) 67
AluBI AGCT 1 cut(s) 92
AluI AGCT 1 cut(s) 92
AlwNI CAGNNNCTG 1 cut(s) 92
Ama87I CYCGRG 1 cut(s) 58
AoxI GGCC 3 cut(s) 62, 219, 253
ApeKI GCWGC 3 cut(s) 89, 92, 120
AvaI CYCGRG 1 cut(s) 58
BbsI GAAGAC 1 cut(s) 321
BbvI GCAGC 3 cut(s) 79, 101, 132
BccI CCATC 1 cut(s) 169
BciT130I CCWGG 1 cut(s) 69
BfuAI ACCTGC 1 cut(s) 42
BglI GCCNNNNNGGC 1 cut(s) 218
BisI GCNGC 4 cut(s) 90, 93, 121, 256
BlsI GCNGC 4 cut(s) 91, 94, 122, 257
Bme1390I CCNGG 1 cut(s) 69
BmeT110I CYCGRG 1 cut(s) 58
BmrFI CCNGG 1 cut(s) 69
BpiI GAAGAC 1 cut(s) 321
BpmI CTGGAG 1 cut(s) 292
Bse1I ACTGG 3 cut(s) 13, 282, 309
Bse3DI GCAATG 1 cut(s) 112
BseBI CCWGG 1 cut(s) 69
BseMI GCAATG 1 cut(s) 112
BseNI ACTGG 3 cut(s) 13, 282, 309
BseRI GAGGAG 1 cut(s) 290
BseXI GCAGC 3 cut(s) 79, 101, 132
BseYI CCCAGC 1 cut(s) 81
BshFI GGCC 3 cut(s) 64, 221, 255
BsiHKCI CYCGRG 1 cut(s) 58
BsiSI CCGG 1 cut(s) 222
BsnI GGCC 3 cut(s) 64, 221, 255
BsoBI CYCGRG 1 cut(s) 58
BspACI CCGC 1 cut(s) 256
BspANI GGCC 3 cut(s) 64, 221, 255
BspMI ACCTGC 1 cut(s) 42
BsrDI GCAATG 1 cut(s) 112
BsrI ACTGG 3 cut(s) 13, 282, 309
Bst2UI CCWGG 1 cut(s) 69
Bst6I CTCTTC 1 cut(s) 267
BstC8I GCNNGC 2 cut(s) 87, 158
BstDEI CTNAG 1 cut(s) 141
BstMWI GCNNNNNNNGC 1 cut(s) 218
BstNI CCWGG 1 cut(s) 69
BstSCI CCNGG 1 cut(s) 67
BstV1I GCAGC 3 cut(s) 79, 101, 132
BstV2I GAAGAC 1 cut(s) 321
BsuRI GGCC 3 cut(s) 64, 221, 255
BtgZI GCGATG 1 cut(s) 315
BtsIMutI CAGTG 1 cut(s) 316
BveI ACCTGC 1 cut(s) 42
Cac8I GCNNGC 2 cut(s) 87, 158
CaiI CAGNNNCTG 1 cut(s) 92
CsiI ACCWGGT 1 cut(s) 67
Csp6I GTAC 1 cut(s) 247
CviJI RGCY 9 cut(s) 28, 64, 85, 92, 138, 160, 212, 221, 255
CviKI_1 RGCY 9 cut(s) 28, 64, 85, 92, 138, 160, 212, 221, 255
CviQI GTAC 1 cut(s) 247
DdeI CTNAG 1 cut(s) 141
EaeI YGGCCR 1 cut(s) 253
Eam1104I CTCTTC 1 cut(s) 267
EarI CTCTTC 1 cut(s) 267
Eco88I CYCGRG 1 cut(s) 58
EcoRII CCWGG 1 cut(s) 67
FaiI YATR 1 cut(s) 75
FalI AAGNNNNNCTT 2 cut(s) 17, 49
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 4 cut(s) 90, 93, 121, 256
Fsp4HI GCNGC 4 cut(s) 90, 93, 121, 256
GluI GCNGC 4 cut(s) 90, 93, 121, 256
GsaI CCCAGC 1 cut(s) 85
GsuI CTGGAG 1 cut(s) 292
HaeIII GGCC 3 cut(s) 64, 221, 255
HapII CCGG 1 cut(s) 222
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 2 cut(s) 278, 305
HpaII CCGG 1 cut(s) 222
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 1 cut(s) 179
Hpy188III TCNNGA 2 cut(s) 58, 288
Hpy8I GTNNAC 1 cut(s) 6
HpyF10VI GCNNNNNNNGC 1 cut(s) 218
HpyF3I CTNAG 1 cut(s) 141
Lsp1109I GCAGC 3 cut(s) 79, 101, 132
MabI ACCWGGT 1 cut(s) 67
MboII GAAGA 2 cut(s) 284, 326
MluCI AATT 2 cut(s) 172, 180
MlyI GAGTC 2 cut(s) 287, 299
MmeI TCCRAC 1 cut(s) 123
MnlI CCTC 3 cut(s) 54, 197, 268
MseI TTAA 1 cut(s) 198
MspA1I CMGCKG 1 cut(s) 92
MspI CCGG 1 cut(s) 222
MspR9I CCNGG 1 cut(s) 69
MvaI CCWGG 1 cut(s) 69
MwoI GCNNNNNNNGC 1 cut(s) 218
PaeR7I CTCGAG 1 cut(s) 58
PkrI GCNGC 4 cut(s) 91, 94, 122, 257
PleI GAGTC 2 cut(s) 286, 299
PpsI GAGTC 2 cut(s) 286, 299
Psp6I CCWGG 1 cut(s) 67
PspFI CCCAGC 1 cut(s) 81
PspGI CCWGG 1 cut(s) 67
PstNI CAGNNNCTG 1 cut(s) 92
PvuII CAGCTG 1 cut(s) 92
RsaI GTAC 1 cut(s) 248
RsaNI GTAC 1 cut(s) 247
SalI GTCGAC 1 cut(s) 4
SaqAI TTAA 1 cut(s) 198
SatI GCNGC 4 cut(s) 90, 93, 121, 256
SchI GAGTC 2 cut(s) 287, 299
ScrFI CCNGG 1 cut(s) 69
SetI ASST 4 cut(s) 18, 56, 73, 94
SexAI ACCWGGT 1 cut(s) 67
Sfr274I CTCGAG 1 cut(s) 58
SlaI CTCGAG 1 cut(s) 58
SmlI CTYRAG 1 cut(s) 58
SmoI CTYRAG 1 cut(s) 58
Sse9I AATT 2 cut(s) 172, 180
SsiI CCGC 1 cut(s) 256
StyD4I CCNGG 1 cut(s) 67
TaqI TCGA 2 cut(s) 5, 59
TasI AATT 2 cut(s) 172, 180
TatI WGTACW 1 cut(s) 246
TauI GCSGC 1 cut(s) 258
Tru1I TTAA 1 cut(s) 198
Tru9I TTAA 1 cut(s) 198
TscAI CASTG 1 cut(s) 316
TseI GCWGC 3 cut(s) 89, 92, 120
TspGWI ACGGA 1 cut(s) 216
TspRI CASTG 1 cut(s) 316
XhoI CTCGAG 1 cut(s) 58
XmiI GTMKAC 1 cut(s) 5
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.