Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003469

Physical Location & Seq

Genomic Coordinates Reverse (-)

34678753 .. 34683855

Gene Structure 5103 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0199100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1482 bp

ATGGGGTTGGACAGCATACTAGGTTATCTGCAGAATAAGACCATTTTGATCACTGGTGCGACCGGCTTCCTTGGAATGGTGTTTGTGGAGAAAATTCTAAGGGTGCAACCAAATGTGAAGAAGCTCTATCTTCTTGTAAGAGCCTCTGATACCAAGTCAGCAACACATCGCATGCAAGATGAGATTATAGGGAAGGAATTGTTCAGGGTTCTGAGGGAGAAATGCGGGGCAGATTTTGATTCTTTCATTTCCGAAAAAGTTGTTGCTCTCCCAGGAGATGTCACTTTCGAGAACCTCGGAGTGAAAGAACCCAGATTGGTGGAAGAACTATACAATGAAATACAGATAATATTCAACTCTGCAGCCACCACCAACTTTGACGAAAGATATGATATTTCACTGGCGGTAAATACTTTTGGAGTTCTGCAAGTGTTGAGCTTTGCGAACAAATGTTTCAAACTACAGATACTTCTCCATGTATCAACTGCTTATGTGTGTGGGGAAAGGGCGGGGCTCATACCAGAAGACTCATCTTCAATGGATAAGATGGTAAAGGAGATGGGTAATTTTGATTTTGAAACATTGGAAAAGGGCCTTGTGCAGGAGAAATTGAATGAACTAAAAGCACTAGATGCTTCAGAAGAAGTTGTTACAAACACAATGAAGGATTTTGGCATTAAAAGGGCTAGACTATATGGATGGCCAAACACGTATGTGTTCACAAAAGCAATGGGTGAAATATTTCTACAACGCTCGAAAGACAATTTGCCTCTTGTGGTCGTACGTCCAACAATAGTTACTAGCACCAACAAGGAACCATTTTCCGGTTGGATCCAAGGTTTCAGAACTATTGATAGTGTAATTGCTGGTTATTGCAAAGGCAAGCTGACATGCTTGCTTGCCGATCCTGCAACAGTACTCGATATGATTCCTGTTGACATGTTGGTAAATTCAATAATCATAGCAATGGTGGCAAATGCAAATCAGTCTTCTGGAAATATTATTTATCATGTCGGATCCTCATTGAGAAACCCTTTGAAATTATTTCAAATGCACAACTTTATCTTTCAATACTTCACCAAGAATCCTTGGCTTGATAAGGACGGTAAGCCTGTCATTGTTACCAAGGGTACAATATTGACGACTATGGCTACTTTTCGCATGTACATGAATATTCGCTACATGCTACCTTTGAAGGGATTGAAGTTCATGAACAAAGCAGTCTGCCAGTATTTCCAAGAGATATATGTCAACTATAGTCGGAAACTCAACTTGGTTATGCGCCTGGTAGAGCTATACGAACCCTATATGCTGTTCAAAGGAATCTTTGATGACACCAATACAGAGAAGTTGTGGAGGACAGCAGGGGAGAGTTTCATAGAGGTTGAAAGTTTTAATTTTGATGCGACACGCATAGATTGGGAAGAGTACATCATGCACACTCACATTCCTGGCCTCCGAAAACATGTTTTGATCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

493

Amino Acids

56.26

Weight (kDa)

8.03

Isoelectric Point (pI)

35.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Epimerase	PF01370	15 - 179	7.8e-07	NAD dependent epimerase/dehydratase family
NAD_binding_4	PF07993	17 - 319	1.7e-72	Male sterility protein
Sterile	PF03015	394 - 491	9.8e-17	Male sterility protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003469)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g19541
prunus_persica	Prupe.1G120700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0424771 RchiOBHm_Chr4g0425191
rosa_laevigata	RLG00000007392 RLG00000007422 RLG00000007424 RLG00000007425 RLG00000007427 RLG00000007430 RLG00000007433 RLG00000020002 RLG00000035449
rosa_roxburghii	Rroxscaffold_4G00318800 Rroxscaffold_5G00366650 Rroxscaffold_5G00366780 Rroxscaffold_5G00366880 Rroxscaffold_5G00366990
rosa_rugosa	Rorug04G0199100 Rorug04G0199300
rosa_samantha	Rh4AG256300 Rh4AG256600 Rh4AG256700 Rh4BG261700 Rh4BG262100 Rh4CG272900 Rh4CG273000 Rh4CG273100 Rh4CG275600 Rh4DG256500 Rh4DG256600 Rh4DG256700 Rh4DG257000 Rh4DG257400 Rh4DG257500 Rh4DG257900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	225, 404, 509
AclWI	GGATC	5 cut(s)	826, 839, 899, 1011, 1024
AcoI	YGGCCR	1 cut(s)	701
AcsI	RAATTY	2 cut(s)	93, 949
AcuI	CTGAAG	1 cut(s)	621
AfaI	GTAC	5 cut(s)	783, 918, 1132, 1166, 1430
AfiI	CCNNNNNNNGG	4 cut(s)	76, 601, 824, 1196
AflIII	ACRYGT	3 cut(s)	708, 939, 1465
AjnI	CCWGG	3 cut(s)	271, 1284, 1450
AjuI	GAANNNNNNNTTGG	2 cut(s)	1256, 1288
AleI	CACNNNNGTG	1 cut(s)	713
AluBI	AGCT	4 cut(s)	124, 438, 886, 1294
AluI	AGCT	4 cut(s)	124, 438, 886, 1294
AlwI	GGATC	5 cut(s)	826, 839, 899, 1011, 1024
AoxI	GGCC	3 cut(s)	592, 701, 1453
ApeKI	GCWGC	1 cut(s)	362
ApoI	RAATTY	2 cut(s)	93, 949
Asp700I	GAANNNNTTC	1 cut(s)	741
AspLEI	GCGC	1 cut(s)	1284
AspS9I	GGNCC	1 cut(s)	592
AsuHPI	GGTGA	2 cut(s)	746, 1069
BalI	TGGCCA	1 cut(s)	703
BamHI	GGATCC	2 cut(s)	831, 1016
BanII	GRGCYC	1 cut(s)	516
BbsI	GAAGAC	2 cut(s)	531, 981
BbvI	GCAGC	1 cut(s)	374
BccI	CCATC	3 cut(s)	541, 553, 693
BciT130I	CCWGG	3 cut(s)	273, 1286, 1452
BclI	TGATCA	2 cut(s)	48, 1473
BfaI	CTAG	4 cut(s)	20, 629, 687, 801
BfmI	CTRYAG	4 cut(s)	29, 360, 461, 1255
BisI	GCNGC	1 cut(s)	363
BlsI	GCNGC	1 cut(s)	364
BmcAI	AGTACT	1 cut(s)	918
Bme1390I	CCNGG	3 cut(s)	273, 1286, 1452
BmgT120I	GGNCC	1 cut(s)	592
BmiI	GGNNCC	3 cut(s)	816, 833, 1018
BmrFI	CCNGG	3 cut(s)	273, 1286, 1452
BmsI	GCATC	2 cut(s)	622, 1393
BpiI	GAAGAC	2 cut(s)	531, 981
BsaAI	YACGTR	1 cut(s)	711
BsaJI	CCNNGG	6 cut(s)	70, 271, 295, 835, 1088, 1125
BsaWI	WCCGGW	1 cut(s)	824
Bsc4I	CCNNNNNNNGG	4 cut(s)	76, 601, 824, 1196
Bse118I	RCCGGY	1 cut(s)	62
Bse1I	ACTGG	3 cut(s)	58, 405, 1228
Bse3DI	GCAATG	2 cut(s)	735, 972
BseBI	CCWGG	3 cut(s)	273, 1286, 1452
BseDI	CCNNGG	6 cut(s)	70, 271, 295, 835, 1088, 1125
BseGI	GGATG	1 cut(s)	704
BseLI	CCNNNNNNNGG	4 cut(s)	76, 601, 824, 1196
BseMI	GCAATG	2 cut(s)	735, 972
BseMII	CTCAG	1 cut(s)	203
BseNI	ACTGG	3 cut(s)	58, 405, 1228
BseXI	GCAGC	1 cut(s)	374
BsgI	GTGCAG	1 cut(s)	620
Bsh1285I	CGRYCG	1 cut(s)	63
BshFI	GGCC	3 cut(s)	594, 703, 1455
BsiEI	CGRYCG	1 cut(s)	63
BsiSI	CCGG	2 cut(s)	63, 825
BsiWI	CGTACG	1 cut(s)	781
BslI	CCNNNNNNNGG	4 cut(s)	76, 601, 824, 1196
BsnI	GGCC	3 cut(s)	594, 703, 1455
Bsp1286I	GDGCHC	1 cut(s)	516
Bsp1407I	TGTACA	1 cut(s)	1164
Bsp143I	GATC	5 cut(s)	48, 831, 904, 1016, 1473
BspACI	CCGC	3 cut(s)	225, 404, 509
BspANI	GGCC	3 cut(s)	594, 703, 1455
BspCNI	CTCAG	1 cut(s)	204
BspHI	TCATGA	1 cut(s)	1209
BspLI	GGNNCC	3 cut(s)	816, 833, 1018
BspMAI	CTGCAG	2 cut(s)	33, 364
BspPI	GGATC	5 cut(s)	826, 839, 899, 1011, 1024
BsrDI	GCAATG	2 cut(s)	735, 972
BsrFI	RCCGGY	1 cut(s)	62
BsrGI	TGTACA	1 cut(s)	1164
BsrI	ACTGG	3 cut(s)	58, 405, 1228
BssAI	RCCGGY	1 cut(s)	62
BssECI	CCNNGG	6 cut(s)	70, 271, 295, 835, 1088, 1125
BssMI	GATC	5 cut(s)	48, 831, 904, 1016, 1473
BssT1I	CCWWGG	4 cut(s)	70, 835, 1088, 1125
Bst2UI	CCWGG	3 cut(s)	273, 1286, 1452
Bst4CI	ACNGT	2 cut(s)	916, 1106
Bst6I	CTCTTC	1 cut(s)	1419
BstAPI	GCANNNNNTGC	1 cut(s)	632
BstAUI	TGTACA	1 cut(s)	1164
BstBAI	YACGTR	1 cut(s)	711
BstC8I	GCNNGC	4 cut(s)	173, 884, 896, 900
BstDEI	CTNAG	2 cut(s)	98, 212
BstENI	CCTNNNNNAGG	1 cut(s)	599
BstF5I	GGATG	1 cut(s)	704
BstHHI	GCGC	1 cut(s)	1284
BstKTI	GATC	5 cut(s)	51, 834, 907, 1019, 1476
BstMBI	GATC	5 cut(s)	48, 831, 904, 1016, 1473
BstMCI	CGRYCG	1 cut(s)	63
BstMWI	GCNNNNNNNGC	3 cut(s)	632, 908, 971
BstNI	CCWGG	3 cut(s)	273, 1286, 1452
BstNSI	RCATGY	6 cut(s)	175, 894, 943, 1165, 1186, 1469
BstSCI	CCNGG	3 cut(s)	271, 1284, 1450
BstSFI	CTRYAG	4 cut(s)	29, 360, 461, 1255
BstV1I	GCAGC	1 cut(s)	374
BstV2I	GAAGAC	2 cut(s)	531, 981
BstX2I	RGATCY	2 cut(s)	831, 1016
BstXI	CCANNNNNNTGG	1 cut(s)	319
BstYI	RGATCY	2 cut(s)	831, 1016
BsuRI	GGCC	3 cut(s)	594, 703, 1455
BtgZI	GCGATG	1 cut(s)	152
BtsCI	GGATG	1 cut(s)	704
BtsIMutI	CAGTG	2 cut(s)	51, 398
Cac8I	GCNNGC	4 cut(s)	173, 884, 896, 900
CciI	TCATGA	1 cut(s)	1209
CfoI	GCGC	1 cut(s)	1284
Cfr10I	RCCGGY	1 cut(s)	62
Cfr13I	GGNCC	1 cut(s)	592
Csp6I	GTAC	5 cut(s)	782, 917, 1131, 1165, 1429
CspCI	CAANNNNNGTGG	2 cut(s)	358, 393
CviQI	GTAC	5 cut(s)	782, 917, 1131, 1165, 1429
DdeI	CTNAG	2 cut(s)	98, 212
DpnI	GATC	5 cut(s)	50, 833, 906, 1018, 1475
DpnII	GATC	5 cut(s)	48, 831, 904, 1016, 1473
EaeI	YGGCCR	1 cut(s)	701
Eam1104I	CTCTTC	1 cut(s)	1419
EarI	CTCTTC	1 cut(s)	1419
Eco130I	CCWWGG	4 cut(s)	70, 835, 1088, 1125
Eco24I	GRGCYC	1 cut(s)	516
Eco57I	CTGAAG	1 cut(s)	621
EcoNI	CCTNNNNNAGG	1 cut(s)	599
EcoO109I	RGGNCCY	1 cut(s)	592
EcoRII	CCWGG	3 cut(s)	271, 1284, 1450
EcoT14I	CCWWGG	4 cut(s)	70, 835, 1088, 1125
EcoT38I	GRGCYC	1 cut(s)	516
ErhI	CCWWGG	4 cut(s)	70, 835, 1088, 1125
FauI	CCCGC	2 cut(s)	218, 502
FbaI	TGATCA	2 cut(s)	48, 1473
Fnu4HI	GCNGC	1 cut(s)	363
FokI	GGATG	1 cut(s)	711
FriOI	GRGCYC	1 cut(s)	516
Fsp4HI	GCNGC	1 cut(s)	363
FspBI	CTAG	4 cut(s)	20, 629, 687, 801
GlaI	GCGC	1 cut(s)	1283
GluI	GCNGC	1 cut(s)	363
HaeIII	GGCC	3 cut(s)	594, 703, 1455
HapII	CCGG	2 cut(s)	63, 825
HhaI	GCGC	1 cut(s)	1284
Hin6I	GCGC	1 cut(s)	1282
HinP1I	GCGC	1 cut(s)	1282
HincII	GTYRAC	2 cut(s)	937, 1252
HindII	GTYRAC	2 cut(s)	937, 1252
HinfI	GANTC	5 cut(s)	239, 527, 928, 1084, 1323
HpaII	CCGG	2 cut(s)	63, 825
HphI	GGTGA	2 cut(s)	746, 1069
Hpy166II	GTNNAC	3 cut(s)	720, 937, 1252
Hpy188I	TCNGA	9 cut(s)	148, 213, 253, 299, 640, 845, 1016, 1263, 1460
Hpy188III	TCNNGA	3 cut(s)	289, 993, 1210
Hpy8I	GTNNAC	3 cut(s)	720, 937, 1252
HpyAV	CCTTC	3 cut(s)	187, 658, 1189
HpyCH4III	ACNGT	2 cut(s)	916, 1106
HpyCH4IV	ACGT	2 cut(s)	710, 784
HpyF10VI	GCNNNNNNNGC	3 cut(s)	632, 908, 971
HpyF3I	CTNAG	2 cut(s)	98, 212
HpySE526I	ACGT	2 cut(s)	710, 784
HspAI	GCGC	1 cut(s)	1282
Ksp22I	TGATCA	2 cut(s)	48, 1473
Kzo9I	GATC	5 cut(s)	48, 831, 904, 1016, 1473
Lsp1109I	GCAGC	1 cut(s)	374
LweI	GCATC	2 cut(s)	622, 1393
MaeI	CTAG	4 cut(s)	20, 629, 687, 801
MaeII	ACGT	2 cut(s)	710, 784
MaeIII	GTNAC	4 cut(s)	280, 649, 796, 1120
MalI	GATC	5 cut(s)	50, 833, 906, 1018, 1475
MboI	GATC	5 cut(s)	48, 831, 904, 1016, 1473
MboII	GAAGA	8 cut(s)	122, 130, 335, 525, 536, 653, 981, 1436
MflI	RGATCY	2 cut(s)	831, 1016
MhlI	GDGCHC	1 cut(s)	516
MlsI	TGGCCA	1 cut(s)	703
MluCI	AATT	9 cut(s)	93, 197, 565, 608, 763, 861, 949, 1040, 1396
MluNI	TGGCCA	1 cut(s)	703
MlyI	GAGTC	1 cut(s)	521
MmeI	TCCRAC	4 cut(s)	809, 812, 994, 1241
MnlI	CCTC	8 cut(s)	154, 207, 305, 780, 1030, 1350, 1375, 1466
Mox20I	TGGCCA	1 cut(s)	703
MroXI	GAANNNNTTC	1 cut(s)	741
MscI	TGGCCA	1 cut(s)	703
MseI	TTAA	2 cut(s)	678, 1395
MslI	CAYNNNNRTG	3 cut(s)	713, 965, 1166
Msp20I	TGGCCA	1 cut(s)	703
MspI	CCGG	2 cut(s)	63, 825
MspR9I	CCNGG	3 cut(s)	273, 1286, 1452
MvaI	CCWGG	3 cut(s)	273, 1286, 1452
MwoI	GCNNNNNNNGC	3 cut(s)	632, 908, 971
NdeII	GATC	5 cut(s)	48, 831, 904, 1016, 1473
NlaIV	GGNNCC	3 cut(s)	816, 833, 1018
NmuCI	GTSAC	1 cut(s)	280
NspI	RCATGY	6 cut(s)	175, 894, 943, 1165, 1186, 1469
OliI	CACNNNNGTG	1 cut(s)	713
PaeI	GCATGC	1 cut(s)	175
PagI	TCATGA	1 cut(s)	1209
PciI	ACATGT	2 cut(s)	939, 1465
PdmI	GAANNNNTTC	1 cut(s)	741
PfeI	GAWTC	4 cut(s)	239, 928, 1084, 1323
Pfl23II	CGTACG	1 cut(s)	781
PkrI	GCNGC	1 cut(s)	364
PleI	GAGTC	1 cut(s)	521
PpsI	GAGTC	1 cut(s)	521
Ppu21I	YACGTR	1 cut(s)	711
PscI	ACATGT	2 cut(s)	939, 1465
Psp6I	CCWGG	3 cut(s)	271, 1284, 1450
PspGI	CCWGG	3 cut(s)	271, 1284, 1450
PspLI	CGTACG	1 cut(s)	781
PspN4I	GGNNCC	3 cut(s)	816, 833, 1018
PspPI	GGNCC	1 cut(s)	592
PstI	CTGCAG	2 cut(s)	33, 364
PsuI	RGATCY	2 cut(s)	831, 1016
RsaI	GTAC	5 cut(s)	783, 918, 1132, 1166, 1430
RsaNI	GTAC	5 cut(s)	782, 917, 1131, 1165, 1429
RseI	CAYNNNNRTG	3 cut(s)	713, 965, 1166
SaqAI	TTAA	2 cut(s)	678, 1395
SatI	GCNGC	1 cut(s)	363
Sau3AI	GATC	5 cut(s)	48, 831, 904, 1016, 1473
Sau96I	GGNCC	1 cut(s)	592
ScaI	AGTACT	1 cut(s)	918
SchI	GAGTC	1 cut(s)	521
ScrFI	CCNGG	3 cut(s)	273, 1286, 1452
SduI	GDGCHC	1 cut(s)	516
SfaNI	GCATC	2 cut(s)	622, 1393
SfcI	CTRYAG	4 cut(s)	29, 360, 461, 1255
SmiMI	CAYNNNNRTG	3 cut(s)	713, 965, 1166
SphI	GCATGC	1 cut(s)	175
Sse9I	AATT	9 cut(s)	93, 197, 565, 608, 763, 861, 949, 1040, 1396
SsiI	CCGC	3 cut(s)	225, 404, 509
SspI	AATATT	5 cut(s)	351, 741, 1000, 1137, 1174
SspMI	CTAG	4 cut(s)	20, 629, 687, 801
StyD4I	CCNGG	3 cut(s)	271, 1284, 1450
StyI	CCWWGG	4 cut(s)	70, 835, 1088, 1125
TaaI	ACNGT	2 cut(s)	916, 1106
TaiI	ACGT	2 cut(s)	713, 787
TaqI	TCGA	3 cut(s)	288, 755, 921
TasI	AATT	9 cut(s)	93, 197, 565, 608, 763, 861, 949, 1040, 1396
TatI	WGTACW	3 cut(s)	916, 1164, 1428
TfiI	GAWTC	4 cut(s)	239, 928, 1084, 1323
Tru1I	TTAA	2 cut(s)	678, 1395
Tru9I	TTAA	2 cut(s)	678, 1395
TscAI	CASTG	2 cut(s)	58, 405
TseFI	GTSAC	1 cut(s)	280
TseI	GCWGC	1 cut(s)	362
Tsp45I	GTSAC	1 cut(s)	280
TspDTI	ATGAA	8 cut(s)	235, 351, 630, 677, 1184, 1198, 1226, 1366
TspRI	CASTG	2 cut(s)	58, 405
XagI	CCTNNNNNAGG	1 cut(s)	599
XapI	RAATTY	2 cut(s)	93, 949
XceI	RCATGY	6 cut(s)	175, 894, 943, 1165, 1186, 1469
XcmI	CCANNNNNNNNNTGG	1 cut(s)	825
XmnI	GAANNNNTTC	1 cut(s)	741
XspI	CTAG	4 cut(s)	20, 629, 687, 801
ZrmI	AGTACT	1 cut(s)	918

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.