RLG00000020002

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0003469
Physical Location & Seq
Reverse (-)
59865497 .. 59865892
396 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020002

Sequence Viewer

Length: 396 bp
ATGGCATTTGCAGGCCCAATATTGCTAAAGTCTCAGAAGCCAGAAGGTTCTGATAAGCATGCAAGTGGCAAGGGCTCAGCGCCACCACAGCTTGCTTATGAGAACGGTGAAGGTGAGCGAAAGAAGAACGACATAGGTGAGCAAAAGAAAAAAGGCAAAGGTGAGAGAAAGAAGAACGGCATAGGTGAGCAAAAGACGAATGGCAATAAGAAAAAGAAAGGCAAAGGGAAAGGCCAGAAAGCTGATGTTTTCAATATTCAGGGCAACACATTCAATGGAGGCAGCGGCAAAGCTACCAAGTCCGGAGTTTTTGATTTTAATAATACGTATAGTGGCCCAAAAGTATATGAGTCAAGTGATGAAGAAAGTGACTCCTGTGATGAAGAGGCAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

13.97

Weight (kDa)

9.18

Isoelectric Point (pI)

20.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 302
AciI CCGC 1 cut(s) 285
AgsI TTSAA 2 cut(s) 253, 274
AluBI AGCT 3 cut(s) 91, 242, 293
AluI AGCT 3 cut(s) 91, 242, 293
Alw26I GTCTC 1 cut(s) 36
Aor13HI TCCGGA 1 cut(s) 302
AoxI GGCC 3 cut(s) 13, 232, 334
ApeKI GCWGC 1 cut(s) 282
AspLEI GCGC 1 cut(s) 82
AspS9I GGNCC 2 cut(s) 14, 335
AsuHPI GGTGA 5 cut(s) 119, 125, 149, 173, 197
BanII GRGCYC 1 cut(s) 77
BbvI GCAGC 1 cut(s) 294
BceAI ACGGC 1 cut(s) 193
BcoDI GTCTC 1 cut(s) 36
BfoI RGCGCY 1 cut(s) 83
BisI GCNGC 2 cut(s) 283, 286
BlpI GCTNAGC 1 cut(s) 76
BlsI GCNGC 2 cut(s) 284, 287
BmgT120I GGNCC 2 cut(s) 14, 335
Bpu1102I GCTNAGC 1 cut(s) 76
BsaAI YACGTR 1 cut(s) 327
BsaWI WCCGGW 1 cut(s) 302
BseAI TCCGGA 1 cut(s) 302
BseMII CTCAG 2 cut(s) 47, 90
BseXI GCAGC 1 cut(s) 294
BshFI GGCC 3 cut(s) 15, 234, 336
BsiSI CCGG 1 cut(s) 303
BsmAI GTCTC 1 cut(s) 36
BsnI GGCC 3 cut(s) 15, 234, 336
Bsp1286I GDGCHC 1 cut(s) 77
Bsp13I TCCGGA 1 cut(s) 302
Bsp1720I GCTNAGC 1 cut(s) 76
BspACI CCGC 1 cut(s) 285
BspANI GGCC 3 cut(s) 15, 234, 336
BspCNI CTCAG 2 cut(s) 46, 89
BspEI TCCGGA 1 cut(s) 302
Bst4CI ACNGT 1 cut(s) 107
Bst6I CTCTTC 1 cut(s) 378
BstBAI YACGTR 1 cut(s) 327
BstC8I GCNNGC 3 cut(s) 13, 60, 93
BstDEI CTNAG 2 cut(s) 33, 76
BstH2I RGCGCY 1 cut(s) 83
BstHHI GCGC 1 cut(s) 82
BstMAI GTCTC 1 cut(s) 36
BstMWI GCNNNNNNNGC 1 cut(s) 88
BstNSI RCATGY 1 cut(s) 62
BstSNI TACGTA 1 cut(s) 327
BstV1I GCAGC 1 cut(s) 294
BsuRI GGCC 3 cut(s) 15, 234, 336
Cac8I GCNNGC 3 cut(s) 13, 60, 93
CfoI GCGC 1 cut(s) 82
Cfr13I GGNCC 2 cut(s) 14, 335
CviAII CATG 1 cut(s) 59
CviJI RGCY 8 cut(s) 15, 40, 75, 91, 234, 242, 293, 336
CviKI_1 RGCY 8 cut(s) 15, 40, 75, 91, 234, 242, 293, 336
DdeI CTNAG 2 cut(s) 33, 76
Eam1104I CTCTTC 1 cut(s) 378
EarI CTCTTC 1 cut(s) 378
Eco105I TACGTA 1 cut(s) 327
Eco24I GRGCYC 1 cut(s) 77
EcoT38I GRGCYC 1 cut(s) 77
FaeI CATG 1 cut(s) 62
FaiI YATR 7 cut(s) 60, 99, 134, 182, 330, 346, 348
FatI CATG 1 cut(s) 58
Fnu4HI GCNGC 2 cut(s) 283, 286
FriOI GRGCYC 1 cut(s) 77
Fsp4HI GCNGC 2 cut(s) 283, 286
GlaI GCGC 1 cut(s) 81
GluI GCNGC 2 cut(s) 283, 286
HaeII RGCGCY 1 cut(s) 83
HaeIII GGCC 3 cut(s) 15, 234, 336
HapII CCGG 1 cut(s) 303
HhaI GCGC 1 cut(s) 82
Hin1II CATG 1 cut(s) 62
Hin6I GCGC 1 cut(s) 80
HinP1I GCGC 1 cut(s) 80
HinfI GANTC 2 cut(s) 350, 371
HpaII CCGG 1 cut(s) 303
HphI GGTGA 5 cut(s) 119, 125, 149, 173, 197
Hpy188I TCNGA 2 cut(s) 36, 52
Hpy188III TCNNGA 1 cut(s) 303
HpyAV CCTTC 2 cut(s) 38, 104
HpyCH4III ACNGT 1 cut(s) 107
HpyCH4IV ACGT 1 cut(s) 326
HpyCH4V TGCA 2 cut(s) 11, 62
HpyF10VI GCNNNNNNNGC 1 cut(s) 88
HpyF3I CTNAG 2 cut(s) 33, 76
HpySE526I ACGT 1 cut(s) 326
Hsp92II CATG 1 cut(s) 62
HspAI GCGC 1 cut(s) 80
Kpn2I TCCGGA 1 cut(s) 302
LpnPI CCDG 5 cut(s) 54, 245, 248, 316, 388
Lsp1109I GCAGC 1 cut(s) 294
MaeII ACGT 1 cut(s) 326
MaeIII GTNAC 1 cut(s) 368
MboII GAAGA 4 cut(s) 136, 184, 374, 395
MhlI GDGCHC 1 cut(s) 77
MlyI GAGTC 2 cut(s) 359, 365
MnlI CCTC 2 cut(s) 272, 379
MroI TCCGGA 1 cut(s) 302
MseI TTAA 1 cut(s) 318
MslI CAYNNNNRTG 1 cut(s) 63
MspA1I CMGCKG 1 cut(s) 285
MspI CCGG 1 cut(s) 303
MwoI GCNNNNNNNGC 1 cut(s) 88
NlaIII CATG 1 cut(s) 62
NmuCI GTSAC 1 cut(s) 368
NspI RCATGY 1 cut(s) 62
PaeI GCATGC 1 cut(s) 62
PkrI GCNGC 2 cut(s) 284, 287
PleI GAGTC 2 cut(s) 358, 365
PpsI GAGTC 2 cut(s) 358, 365
Ppu21I YACGTR 1 cut(s) 327
PspPI GGNCC 2 cut(s) 14, 335
RseI CAYNNNNRTG 1 cut(s) 63
SaqAI TTAA 1 cut(s) 318
SatI GCNGC 2 cut(s) 283, 286
Sau96I GGNCC 2 cut(s) 14, 335
SchI GAGTC 2 cut(s) 359, 365
SduI GDGCHC 1 cut(s) 77
SetI ASST 9 cut(s) 49, 93, 115, 139, 163, 187, 244, 295, 329
SmiMI CAYNNNNRTG 1 cut(s) 63
SnaBI TACGTA 1 cut(s) 327
SphI GCATGC 1 cut(s) 62
SsiI CCGC 1 cut(s) 285
SspI AATATT 2 cut(s) 21, 256
TaaI ACNGT 1 cut(s) 107
TaiI ACGT 1 cut(s) 329
TauI GCSGC 1 cut(s) 288
Tru1I TTAA 1 cut(s) 318
Tru9I TTAA 1 cut(s) 318
TseFI GTSAC 1 cut(s) 368
TseI GCWGC 1 cut(s) 282
Tsp45I GTSAC 1 cut(s) 368
TspDTI ATGAA 2 cut(s) 375, 396
XceI RCATGY 1 cut(s) 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.