Rroxscaffold_4G00318800

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0003469
Physical Location & Seq
Reverse (-)
46155460 .. 46156026
567 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00318800.1

Sequence Viewer

Length: 483 bp
ATGGGACTTGCCAAGAGTCCTTGGGTGCTTATAGCAGAGAATGTGCTTGAAGACCTAATTGCGTCTTTTGACAATATGAGGAAGGAAATGGAATCCCCAAAGTTAGAAGAACTGAAGCCTAATTTGATTGCTCGAGTAGGAAAAGTTCTCTTCCATAGGAGCCCTTCAGTTAGCCATGAATCTCTGAAAAACTTGACTACAAATATGTTGAAAAAATTGGAAGAGATCATTTTACACAATGTTCCTGTTTCCTATACGGAGAAGATTGTAAACGAAGTTGTCCCGATTATTGGTGGTCTTCAAGTCCTTCAACATAACATGTGGATTGATGTACCCCCTGTACCGGGTGCCCTAGTGGTTAACATTGGAGGATTATGTGATATGGTTAAAGGTGGTGGAAATACAGCTACAACGATTTTGGTATCTGTTTTGGAGTTAGAAGGAGCAGTGGTAAATGCTGAATATATGGCTGTATGGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

160

Amino Acids

17.53

Weight (kDa)

5.35

Isoelectric Point (pI)

49.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7903 PF25475 4 - 98 1.6e-27 Domain of unknown function (DUF7903)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 347
AcuI CTGAAG 2 cut(s) 134, 150
AfaI GTAC 2 cut(s) 333, 342
AfiI CCNNNNNNNGG 3 cut(s) 290, 343, 344
AflIII ACRYGT 1 cut(s) 318
AgsI TTSAA 4 cut(s) 50, 211, 302, 311
AluBI AGCT 1 cut(s) 407
AluI AGCT 1 cut(s) 407
Ama87I CYCGRG 1 cut(s) 132
AsuC2I CCSGG 1 cut(s) 345
AvaI CYCGRG 1 cut(s) 132
BaeGI GKGCMC 1 cut(s) 352
BanI GGYRCC 1 cut(s) 347
BanII GRGCYC 1 cut(s) 164
BbsI GAAGAC 2 cut(s) 57, 290
BcnI CCSGG 1 cut(s) 345
BfaI CTAG 1 cut(s) 353
Bme1390I CCNGG 1 cut(s) 345
BmeT110I CYCGRG 1 cut(s) 132
BmiI GGNNCC 2 cut(s) 161, 349
BmrFI CCNGG 1 cut(s) 345
BpiI GAAGAC 2 cut(s) 57, 290
BpuMI CCSGG 1 cut(s) 345
BsaJI CCNNGG 1 cut(s) 20
BsaXI ACNNNNNCTCC 2 cut(s) 435, 465
Bsc4I CCNNNNNNNGG 3 cut(s) 290, 343, 344
BseDI CCNNGG 1 cut(s) 20
BseLI CCNNNNNNNGG 3 cut(s) 290, 343, 344
BseSI GKGCMC 1 cut(s) 352
BshNI GGYRCC 1 cut(s) 347
BsiHKCI CYCGRG 1 cut(s) 132
BsiSI CCGG 1 cut(s) 344
BslFI GGGAC 2 cut(s) 18, 266
BslI CCNNNNNNNGG 3 cut(s) 290, 343, 344
BsmFI GGGAC 2 cut(s) 18, 266
BsoBI CYCGRG 1 cut(s) 132
Bsp1286I GDGCHC 2 cut(s) 164, 352
Bsp143I GATC 1 cut(s) 225
BspLI GGNNCC 2 cut(s) 161, 349
BspT107I GGYRCC 1 cut(s) 347
BssECI CCNNGG 1 cut(s) 20
BssMI GATC 1 cut(s) 225
BssT1I CCWWGG 1 cut(s) 20
Bst6I CTCTTC 2 cut(s) 155, 216
BstKTI GATC 1 cut(s) 228
BstMBI GATC 1 cut(s) 225
BstNSI RCATGY 1 cut(s) 322
BstSCI CCNGG 1 cut(s) 343
BstSLI GKGCMC 1 cut(s) 352
BstV2I GAAGAC 2 cut(s) 57, 290
BtsI GCAGTG 1 cut(s) 453
BtsIMutI CAGTG 1 cut(s) 453
CseI GACGC 1 cut(s) 51
Csp6I GTAC 2 cut(s) 332, 341
CviAII CATG 2 cut(s) 176, 319
CviJI RGCY 5 cut(s) 118, 162, 174, 407, 470
CviKI_1 RGCY 5 cut(s) 118, 162, 174, 407, 470
CviQI GTAC 2 cut(s) 332, 341
DpnI GATC 1 cut(s) 227
DpnII GATC 1 cut(s) 225
Eam1104I CTCTTC 2 cut(s) 155, 216
EarI CTCTTC 2 cut(s) 155, 216
Eco130I CCWWGG 1 cut(s) 20
Eco24I GRGCYC 1 cut(s) 164
Eco57I CTGAAG 2 cut(s) 134, 150
Eco88I CYCGRG 1 cut(s) 132
EcoT14I CCWWGG 1 cut(s) 20
EcoT38I GRGCYC 1 cut(s) 164
ErhI CCWWGG 1 cut(s) 20
FaeI CATG 2 cut(s) 179, 322
FaqI GGGAC 2 cut(s) 18, 266
FatI CATG 2 cut(s) 175, 318
FriOI GRGCYC 1 cut(s) 164
FspBI CTAG 1 cut(s) 353
HapII CCGG 1 cut(s) 344
HgaI GACGC 1 cut(s) 51
Hin1II CATG 2 cut(s) 179, 322
HincII GTYRAC 1 cut(s) 361
HindII GTYRAC 1 cut(s) 361
HinfI GANTC 3 cut(s) 16, 92, 179
HpaI GTTAAC 1 cut(s) 361
HpaII CCGG 1 cut(s) 344
Hpy166II GTNNAC 2 cut(s) 271, 361
Hpy188I TCNGA 1 cut(s) 186
Hpy188III TCNNGA 1 cut(s) 283
Hpy8I GTNNAC 2 cut(s) 271, 361
HpyAV CCTTC 4 cut(s) 76, 174, 317, 434
Hsp92II CATG 2 cut(s) 179, 322
KspAI GTTAAC 1 cut(s) 361
Kzo9I GATC 1 cut(s) 225
LmnI GCTCC 2 cut(s) 159, 443
LpnPI CCDG 3 cut(s) 258, 351, 357
MaeI CTAG 1 cut(s) 353
MalI GATC 1 cut(s) 227
MboI GATC 1 cut(s) 225
MboII GAAGA 6 cut(s) 62, 119, 142, 233, 274, 290
MhlI GDGCHC 2 cut(s) 164, 352
MluCI AATT 3 cut(s) 57, 121, 215
MlyI GAGTC 1 cut(s) 25
MnlI CCTC 2 cut(s) 72, 362
MseI TTAA 2 cut(s) 360, 387
MspI CCGG 1 cut(s) 344
MspR9I CCNGG 1 cut(s) 345
NciI CCSGG 1 cut(s) 345
NdeII GATC 1 cut(s) 225
NlaIII CATG 2 cut(s) 179, 322
NlaIV GGNNCC 2 cut(s) 161, 349
NspI RCATGY 1 cut(s) 322
PaeR7I CTCGAG 1 cut(s) 132
PciI ACATGT 1 cut(s) 318
PfeI GAWTC 2 cut(s) 92, 179
PleI GAGTC 1 cut(s) 24
PpsI GAGTC 1 cut(s) 24
PscI ACATGT 1 cut(s) 318
PspN4I GGNNCC 2 cut(s) 161, 349
PspXI VCTCGAGB 1 cut(s) 132
PsrI GAACNNNNNNTAC 2 cut(s) 129, 161
RsaI GTAC 2 cut(s) 333, 342
RsaNI GTAC 2 cut(s) 332, 341
SaqAI TTAA 2 cut(s) 360, 387
Sau3AI GATC 1 cut(s) 225
SchI GAGTC 1 cut(s) 25
ScrFI CCNGG 1 cut(s) 345
SduI GDGCHC 2 cut(s) 164, 352
SetI ASST 3 cut(s) 57, 394, 409
Sfr274I CTCGAG 1 cut(s) 132
SlaI CTCGAG 1 cut(s) 132
SmlI CTYRAG 1 cut(s) 132
SmoI CTYRAG 1 cut(s) 132
Sse9I AATT 3 cut(s) 57, 121, 215
SspMI CTAG 1 cut(s) 353
StyD4I CCNGG 1 cut(s) 343
StyI CCWWGG 1 cut(s) 20
TaqI TCGA 1 cut(s) 133
TasI AATT 3 cut(s) 57, 121, 215
TfiI GAWTC 2 cut(s) 92, 179
Tru1I TTAA 2 cut(s) 360, 387
Tru9I TTAA 2 cut(s) 360, 387
TscAI CASTG 1 cut(s) 453
TspDTI ATGAA 1 cut(s) 192
TspGWI ACGGA 1 cut(s) 272
TspRI CASTG 1 cut(s) 453
XceI RCATGY 1 cut(s) 322
XhoI CTCGAG 1 cut(s) 132
XspI CTAG 1 cut(s) 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.