Rh4CG273000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0003469
Physical Location & Seq
Reverse (-)
52797477 .. 52798222
746 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG273000.1

Sequence Viewer

Length: 372 bp
ATGGCATCAGGCCCGAAGCAAAAGATTTCTGATGAATTCAAAGACATCTCCATCGCGGATGAAAAAGGCAAGGGCTTAGTGCCACCACAGCCTGCTTCTGTGAACGGCGAAGGTGAGCGAAAGAAGAACGGCATAGGTGAGCAAAAGAAAAACGGCAAAGGTGAGCGAAAGACGAATGGCAATAAGAAAAAGAAAGGCATAGGGAAAGCTGATGTTTTCAATATTCAGGGCAACAAATTCGATGGAGGCAGCGGCAAAGCTACCAGGACCGGAGTTTTTGATTTTAATAACACGTATGGTGGCCCCAAAGTATACGAGTCGAGTGACGAGGAAAGTGACTCCTGTGATAAGGAGGCAGGGACCGCAGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

12.97

Weight (kDa)

9.1

Isoelectric Point (pI)

20.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 312
AccII CGCG 1 cut(s) 56
AciI CCGC 3 cut(s) 56, 252, 363
AcsI RAATTY 2 cut(s) 35, 236
AflIII ACRYGT 1 cut(s) 291
AgsI TTSAA 2 cut(s) 40, 220
AjnI CCWGG 1 cut(s) 263
AluBI AGCT 2 cut(s) 209, 260
AluI AGCT 2 cut(s) 209, 260
AoxI GGCC 2 cut(s) 10, 301
ApeKI GCWGC 1 cut(s) 249
ApoI RAATTY 2 cut(s) 35, 236
AspS9I GGNCC 4 cut(s) 11, 267, 302, 360
AsuHPI GGTGA 3 cut(s) 125, 149, 173
AvaII GGWCC 2 cut(s) 267, 360
BbvI GCAGC 1 cut(s) 261
BccI CCATC 2 cut(s) 59, 236
BceAI ACGGC 3 cut(s) 121, 145, 169
BcgI CGANNNNNNTGC 2 cut(s) 220, 254
BciT130I CCWGG 1 cut(s) 265
BisI GCNGC 2 cut(s) 250, 253
BlsI GCNGC 2 cut(s) 251, 254
Bme1390I CCNGG 1 cut(s) 265
Bme18I GGWCC 2 cut(s) 267, 360
BmgT120I GGNCC 4 cut(s) 11, 267, 302, 360
BmiI GGNNCC 2 cut(s) 304, 361
BmrFI CCNGG 1 cut(s) 265
BmsI GCATC 1 cut(s) 14
BsaAI YACGTR 1 cut(s) 294
BsaWI WCCGGW 1 cut(s) 269
BseBI CCWGG 1 cut(s) 265
BseGI GGATG 1 cut(s) 64
BseXI GCAGC 1 cut(s) 261
Bsh1236I CGCG 1 cut(s) 56
BshFI GGCC 2 cut(s) 12, 303
BsiSI CCGG 1 cut(s) 270
BsnI GGCC 2 cut(s) 12, 303
BspACI CCGC 3 cut(s) 56, 252, 363
BspANI GGCC 2 cut(s) 12, 303
BspFNI CGCG 1 cut(s) 56
BspLI GGNNCC 2 cut(s) 304, 361
BssNAI GTATAC 1 cut(s) 313
Bst1107I GTATAC 1 cut(s) 313
Bst2UI CCWGG 1 cut(s) 265
BstBAI YACGTR 1 cut(s) 294
BstC8I GCNNGC 1 cut(s) 93
BstDEI CTNAG 1 cut(s) 76
BstF5I GGATG 1 cut(s) 64
BstFNI CGCG 1 cut(s) 56
BstMWI GCNNNNNNNGC 2 cut(s) 88, 362
BstNI CCWGG 1 cut(s) 265
BstSCI CCNGG 1 cut(s) 263
BstUI CGCG 1 cut(s) 56
BstV1I GCAGC 1 cut(s) 261
BstZ17I GTATAC 1 cut(s) 313
BsuRI GGCC 2 cut(s) 12, 303
BtgZI GCGATG 1 cut(s) 37
BtsCI GGATG 1 cut(s) 64
Cac8I GCNNGC 1 cut(s) 93
Cfr13I GGNCC 4 cut(s) 11, 267, 302, 360
CviJI RGCY 6 cut(s) 12, 75, 91, 209, 260, 303
CviKI_1 RGCY 6 cut(s) 12, 75, 91, 209, 260, 303
DdeI CTNAG 1 cut(s) 76
Eco47I GGWCC 2 cut(s) 267, 360
EcoRI GAATTC 1 cut(s) 35
EcoRII CCWGG 1 cut(s) 263
FaiI YATR 4 cut(s) 134, 200, 297, 313
FblI GTMKAC 1 cut(s) 312
Fnu4HI GCNGC 2 cut(s) 250, 253
FokI GGATG 1 cut(s) 71
Fsp4HI GCNGC 2 cut(s) 250, 253
GluI GCNGC 2 cut(s) 250, 253
HaeIII GGCC 2 cut(s) 12, 303
HapII CCGG 1 cut(s) 270
HinfI GANTC 2 cut(s) 317, 338
HpaII CCGG 1 cut(s) 270
HphI GGTGA 3 cut(s) 125, 149, 173
Hpy166II GTNNAC 2 cut(s) 103, 313
Hpy188I TCNGA 1 cut(s) 31
Hpy8I GTNNAC 2 cut(s) 103, 313
HpyAV CCTTC 1 cut(s) 104
HpyCH4IV ACGT 1 cut(s) 293
HpyF10VI GCNNNNNNNGC 2 cut(s) 88, 362
HpyF3I CTNAG 1 cut(s) 76
HpySE526I ACGT 1 cut(s) 293
LpnPI CCDG 8 cut(s) 105, 212, 250, 277, 283, 342, 351, 355
Lsp1109I GCAGC 1 cut(s) 261
LweI GCATC 1 cut(s) 14
MaeII ACGT 1 cut(s) 293
MaeIII GTNAC 2 cut(s) 323, 335
MboII GAAGA 1 cut(s) 136
MluCI AATT 2 cut(s) 35, 236
MlyI GAGTC 2 cut(s) 326, 332
MnlI CCTC 3 cut(s) 239, 322, 346
MseI TTAA 1 cut(s) 285
MspA1I CMGCKG 1 cut(s) 252
MspI CCGG 1 cut(s) 270
MspR9I CCNGG 1 cut(s) 265
MvaI CCWGG 1 cut(s) 265
MvnI CGCG 1 cut(s) 56
MwoI GCNNNNNNNGC 2 cut(s) 88, 362
NlaIV GGNNCC 2 cut(s) 304, 361
NmuCI GTSAC 2 cut(s) 323, 335
PkrI GCNGC 2 cut(s) 251, 254
PleI GAGTC 2 cut(s) 325, 332
PpsI GAGTC 2 cut(s) 325, 332
Ppu21I YACGTR 1 cut(s) 294
Psp6I CCWGG 1 cut(s) 263
PspGI CCWGG 1 cut(s) 263
PspN4I GGNNCC 2 cut(s) 304, 361
PspPI GGNCC 4 cut(s) 11, 267, 302, 360
SaqAI TTAA 1 cut(s) 285
SatI GCNGC 2 cut(s) 250, 253
Sau96I GGNCC 4 cut(s) 11, 267, 302, 360
SchI GAGTC 2 cut(s) 326, 332
ScrFI CCNGG 1 cut(s) 265
SetI ASST 6 cut(s) 115, 139, 163, 211, 262, 296
SfaNI GCATC 1 cut(s) 14
SinI GGWCC 2 cut(s) 267, 360
Sse9I AATT 2 cut(s) 35, 236
SsiI CCGC 3 cut(s) 56, 252, 363
SspI AATATT 1 cut(s) 223
StyD4I CCNGG 1 cut(s) 263
TaiI ACGT 1 cut(s) 296
TaqI TCGA 2 cut(s) 240, 320
TasI AATT 2 cut(s) 35, 236
TauI GCSGC 1 cut(s) 255
Tru1I TTAA 1 cut(s) 285
Tru9I TTAA 1 cut(s) 285
TseFI GTSAC 2 cut(s) 323, 335
TseI GCWGC 1 cut(s) 249
Tsp45I GTSAC 2 cut(s) 323, 335
TspDTI ATGAA 2 cut(s) 48, 75
VpaK11BI GGWCC 2 cut(s) 267, 360
XapI RAATTY 2 cut(s) 35, 236
XmiI GTMKAC 1 cut(s) 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.