Rh4CG275600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0003469
Physical Location & Seq
Reverse (-)
53134557 .. 53135336
780 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG275600.1

Sequence Viewer

Length: 384 bp
ATGTGTATCCAGAATTTGAAAATGGCATCGGGTCAGCTATTTCTAAAGCCTACAAATGCTTGCTTTCTCAGGCAATATCGTTCTGATGAAATATCAACGGTGAAGGTCGAGCACCAAACAAGCGAGGACGCCTCAAGGCCACCACATACTTCCCCACAGCCTGTTTCCATGAATGCCAAAAGTGACCAAAAGAAGAAAGGAAGGAAGAAGAAGAGCGGCAAAGGTGGAGGCGCTGTTTTCCGCATTAAAGGGAACACCATTAACGGAGACAAAGCTGACAAGGCTGGAGTTTTCGGCTTTGGGAATAAATATATTGGCCACAAGAAACGAGAGGAAGAAGAATCCAGTGAAGAAGAAAGCTGCTCCAGTGAAGACGAGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

14.04

Weight (kDa)

8.96

Isoelectric Point (pI)

61.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 216
AciI CCGC 2 cut(s) 216, 241
AcoI YGGCCR 1 cut(s) 316
AcsI RAATTY 1 cut(s) 13
AcyI GRCGYC 1 cut(s) 129
AgsI TTSAA 1 cut(s) 19
AluBI AGCT 3 cut(s) 37, 275, 360
AluI AGCT 3 cut(s) 37, 275, 360
Alw21I GWGCWC 1 cut(s) 114
Alw26I GTCTC 1 cut(s) 261
AoxI GGCC 2 cut(s) 137, 316
ApeKI GCWGC 1 cut(s) 360
ApoI RAATTY 1 cut(s) 13
AspLEI GCGC 1 cut(s) 233
AsuHPI GGTGA 1 cut(s) 112
BalI TGGCCA 1 cut(s) 318
BbsI GAAGAC 1 cut(s) 378
Bbv12I GWGCWC 1 cut(s) 114
BbvI GCAGC 1 cut(s) 347
BciVI GTATCC 1 cut(s) 17
BcoDI GTCTC 1 cut(s) 261
BfoI RGCGCY 1 cut(s) 234
BfuI GTATCC 1 cut(s) 17
BisI GCNGC 2 cut(s) 217, 361
BlsI GCNGC 2 cut(s) 218, 362
BmsI GCATC 1 cut(s) 35
BpiI GAAGAC 1 cut(s) 378
BplI GAGNNNNNCTC 2 cut(s) 116, 148
BpmI CTGGAG 2 cut(s) 306, 349
BpuEI CTTGAG 1 cut(s) 118
BsaHI GRCGYC 1 cut(s) 129
BsaXI ACNNNNNCTCC 2 cut(s) 219, 249
Bse1I ACTGG 2 cut(s) 345, 366
BseMII CTCAG 1 cut(s) 82
BseNI ACTGG 2 cut(s) 345, 366
BseXI GCAGC 1 cut(s) 347
BshFI GGCC 2 cut(s) 139, 318
BsiHKAI GWGCWC 1 cut(s) 114
BsmAI GTCTC 1 cut(s) 261
BsmI GAATGC 1 cut(s) 178
BsnI GGCC 2 cut(s) 139, 318
Bsp1286I GDGCHC 1 cut(s) 114
BspACI CCGC 2 cut(s) 216, 241
BspANI GGCC 2 cut(s) 139, 318
BspCNI CTCAG 1 cut(s) 81
BspQI GCTCTTC 1 cut(s) 206
BsrBI CCGCTC 1 cut(s) 216
BsrI ACTGG 2 cut(s) 345, 366
BssNI GRCGYC 1 cut(s) 129
Bst4CI ACNGT 1 cut(s) 100
Bst6I CTCTTC 1 cut(s) 206
BstACI GRCGYC 1 cut(s) 129
BstC8I GCNNGC 1 cut(s) 61
BstDEI CTNAG 1 cut(s) 68
BstH2I RGCGCY 1 cut(s) 234
BstHHI GCGC 1 cut(s) 233
BstMAI GTCTC 1 cut(s) 261
BstMWI GCNNNNNNNGC 1 cut(s) 281
BstV1I GCAGC 1 cut(s) 347
BstV2I GAAGAC 1 cut(s) 378
BsuI GTATCC 1 cut(s) 17
BsuRI GGCC 2 cut(s) 139, 318
BtsIMutI CAGTG 2 cut(s) 352, 373
Cac8I GCNNGC 1 cut(s) 61
CfoI GCGC 1 cut(s) 233
CseI GACGC 1 cut(s) 137
CviAII CATG 1 cut(s) 169
CviJI RGCY 9 cut(s) 37, 49, 139, 160, 275, 284, 297, 318, 360
CviKI_1 RGCY 9 cut(s) 37, 49, 139, 160, 275, 284, 297, 318, 360
DdeI CTNAG 1 cut(s) 68
EaeI YGGCCR 1 cut(s) 316
Eam1104I CTCTTC 1 cut(s) 206
EarI CTCTTC 1 cut(s) 206
FaeI CATG 1 cut(s) 172
FaiI YATR 3 cut(s) 147, 170, 312
FatI CATG 1 cut(s) 168
Fnu4HI GCNGC 2 cut(s) 217, 361
Fsp4HI GCNGC 2 cut(s) 217, 361
GlaI GCGC 1 cut(s) 232
GluI GCNGC 2 cut(s) 217, 361
GsuI CTGGAG 2 cut(s) 306, 349
HaeII RGCGCY 1 cut(s) 234
HaeIII GGCC 2 cut(s) 139, 318
HgaI GACGC 1 cut(s) 137
HhaI GCGC 1 cut(s) 233
Hin1I GRCGYC 1 cut(s) 129
Hin1II CATG 1 cut(s) 172
Hin6I GCGC 1 cut(s) 231
HinP1I GCGC 1 cut(s) 231
HinfI GANTC 1 cut(s) 341
HphI GGTGA 1 cut(s) 112
Hpy188I TCNGA 1 cut(s) 85
Hpy188III TCNNGA 1 cut(s) 10
HpyAV CCTTC 2 cut(s) 97, 195
HpyCH4III ACNGT 1 cut(s) 100
HpyF10VI GCNNNNNNNGC 1 cut(s) 281
HpyF3I CTNAG 1 cut(s) 68
Hsp92I GRCGYC 1 cut(s) 129
Hsp92II CATG 1 cut(s) 172
HspAI GCGC 1 cut(s) 231
LguI GCTCTTC 1 cut(s) 206
LmnI GCTCC 1 cut(s) 368
LpnPI CCDG 6 cut(s) 23, 55, 174, 270, 358, 379
Lsp1109I GCAGC 1 cut(s) 347
LweI GCATC 1 cut(s) 35
MaeIII GTNAC 1 cut(s) 182
MbiI CCGCTC 1 cut(s) 216
MboII GAAGA 9 cut(s) 205, 217, 220, 223, 347, 350, 362, 365, 383
MhlI GDGCHC 1 cut(s) 114
MlsI TGGCCA 1 cut(s) 318
MluCI AATT 1 cut(s) 13
MluNI TGGCCA 1 cut(s) 318
MnlI CCTC 5 cut(s) 118, 142, 221, 325, 370
Mox20I TGGCCA 1 cut(s) 318
MscI TGGCCA 1 cut(s) 318
MseI TTAA 2 cut(s) 246, 261
Msp20I TGGCCA 1 cut(s) 318
Mva1269I GAATGC 1 cut(s) 178
MwoI GCNNNNNNNGC 1 cut(s) 281
NlaIII CATG 1 cut(s) 172
NmuCI GTSAC 1 cut(s) 182
PciSI GCTCTTC 1 cut(s) 206
PctI GAATGC 1 cut(s) 178
PfeI GAWTC 1 cut(s) 341
PkrI GCNGC 2 cut(s) 218, 362
SapI GCTCTTC 1 cut(s) 206
SaqAI TTAA 2 cut(s) 246, 261
SatI GCNGC 2 cut(s) 217, 361
SduI GDGCHC 1 cut(s) 114
SetI ASST 5 cut(s) 39, 108, 226, 277, 362
SfaNI GCATC 1 cut(s) 35
SmlI CTYRAG 1 cut(s) 133
SmoI CTYRAG 1 cut(s) 133
Sse9I AATT 1 cut(s) 13
SsiI CCGC 2 cut(s) 216, 241
TaaI ACNGT 1 cut(s) 100
TaqI TCGA 1 cut(s) 108
TasI AATT 1 cut(s) 13
TauI GCSGC 1 cut(s) 219
TfiI GAWTC 1 cut(s) 341
Tru1I TTAA 2 cut(s) 246, 261
Tru9I TTAA 2 cut(s) 246, 261
TscAI CASTG 2 cut(s) 352, 373
TseFI GTSAC 1 cut(s) 182
TseI GCWGC 1 cut(s) 360
Tsp45I GTSAC 1 cut(s) 182
TspDTI ATGAA 2 cut(s) 102, 185
TspGWI ACGGA 1 cut(s) 279
TspRI CASTG 2 cut(s) 352, 373
XapI RAATTY 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.