RLG00000007427

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Forward (+)
16649283 .. 16649835
553 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007427

Sequence Viewer

Length: 336 bp
ATGGCATTTGTAGGCCAGATATTGCTCAAGTCTCAGAAGCAAGAAGGTTCTGAGAAATCCAAAGTCATGAACATCGAGCATGCAAATAGCAAGGGCTCAGCGCCACCACAGCCTGCTTCTAAGAACGGCAAAGGTAAGCAAAAGAATGACAATAAGAAAAAGAAAGGCAAAGAGAGCGGTGATGTTTTTAGGGTTGAGGGCAACGAAATCAATGGAGGCAAAGCTGACAAGTGCGGGGTTTTTGGATTTGGCAACAAGTATCATCGCGGCAAGAAACCAAAAGAAGATGAGTCAAGTGAAGAAGAAAGTGACTCCAGTGATGAAGACGAAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

12.1

Weight (kDa)

7.78

Isoelectric Point (pI)

55.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 177
AccII CGCG 1 cut(s) 267
AciI CCGC 3 cut(s) 177, 234, 267
AluBI AGCT 1 cut(s) 224
AluI AGCT 1 cut(s) 224
Alw26I GTCTC 1 cut(s) 36
AoxI GGCC 1 cut(s) 13
AspLEI GCGC 1 cut(s) 103
AsuHPI GGTGA 1 cut(s) 191
BanII GRGCYC 1 cut(s) 98
BbsI GAAGAC 1 cut(s) 330
BceAI ACGGC 1 cut(s) 142
BcoDI GTCTC 1 cut(s) 36
BfoI RGCGCY 1 cut(s) 104
BisI GCNGC 1 cut(s) 268
BlpI GCTNAGC 1 cut(s) 97
BlsI GCNGC 1 cut(s) 269
BpiI GAAGAC 1 cut(s) 330
BpmI CTGGAG 1 cut(s) 298
Bpu1102I GCTNAGC 1 cut(s) 97
BpuEI CTTGAG 1 cut(s) 11
Bse1I ACTGG 1 cut(s) 315
BseMII CTCAG 3 cut(s) 42, 47, 111
BseNI ACTGG 1 cut(s) 315
Bsh1236I CGCG 1 cut(s) 267
BshFI GGCC 1 cut(s) 15
BsmAI GTCTC 1 cut(s) 36
BsnI GGCC 1 cut(s) 15
Bsp1286I GDGCHC 1 cut(s) 98
Bsp1720I GCTNAGC 1 cut(s) 97
BspACI CCGC 3 cut(s) 177, 234, 267
BspANI GGCC 1 cut(s) 15
BspCNI CTCAG 3 cut(s) 43, 46, 110
BspFNI CGCG 1 cut(s) 267
BspHI TCATGA 1 cut(s) 66
BsrBI CCGCTC 1 cut(s) 177
BsrI ACTGG 1 cut(s) 315
Bst6I CTCTTC 1 cut(s) 324
BstC8I GCNNGC 2 cut(s) 81, 114
BstDEI CTNAG 4 cut(s) 33, 51, 97, 120
BstFNI CGCG 1 cut(s) 267
BstH2I RGCGCY 1 cut(s) 104
BstHHI GCGC 1 cut(s) 103
BstMAI GTCTC 1 cut(s) 36
BstMWI GCNNNNNNNGC 2 cut(s) 109, 174
BstNSI RCATGY 1 cut(s) 83
BstUI CGCG 1 cut(s) 267
BstV2I GAAGAC 1 cut(s) 330
BsuRI GGCC 1 cut(s) 15
BtgZI GCGATG 1 cut(s) 248
BtsIMutI CAGTG 1 cut(s) 322
Cac8I GCNNGC 2 cut(s) 81, 114
CciI TCATGA 1 cut(s) 66
CfoI GCGC 1 cut(s) 103
CviAII CATG 2 cut(s) 67, 80
CviJI RGCY 4 cut(s) 15, 96, 112, 224
CviKI_1 RGCY 4 cut(s) 15, 96, 112, 224
DdeI CTNAG 4 cut(s) 33, 51, 97, 120
Eam1104I CTCTTC 1 cut(s) 324
EarI CTCTTC 1 cut(s) 324
Eco24I GRGCYC 1 cut(s) 98
EcoT38I GRGCYC 1 cut(s) 98
FaeI CATG 2 cut(s) 70, 83
FaiI YATR 2 cut(s) 68, 81
FatI CATG 2 cut(s) 66, 79
FauI CCCGC 1 cut(s) 227
Fnu4HI GCNGC 1 cut(s) 268
FriOI GRGCYC 1 cut(s) 98
Fsp4HI GCNGC 1 cut(s) 268
GlaI GCGC 1 cut(s) 102
GluI GCNGC 1 cut(s) 268
GsuI CTGGAG 1 cut(s) 298
HaeII RGCGCY 1 cut(s) 104
HaeIII GGCC 1 cut(s) 15
HhaI GCGC 1 cut(s) 103
Hin1II CATG 2 cut(s) 70, 83
Hin6I GCGC 1 cut(s) 101
HinP1I GCGC 1 cut(s) 101
HinfI GANTC 2 cut(s) 290, 311
HphI GGTGA 1 cut(s) 191
Hpy188I TCNGA 2 cut(s) 36, 52
Hpy188III TCNNGA 1 cut(s) 67
HpyAV CCTTC 1 cut(s) 38
HpyCH4V TGCA 1 cut(s) 83
HpyF10VI GCNNNNNNNGC 2 cut(s) 109, 174
HpyF3I CTNAG 4 cut(s) 33, 51, 97, 120
Hsp92II CATG 2 cut(s) 70, 83
HspAI GCGC 1 cut(s) 101
LpnPI CCDG 3 cut(s) 29, 126, 328
MaeIII GTNAC 1 cut(s) 308
MbiI CCGCTC 1 cut(s) 177
MboII GAAGA 4 cut(s) 296, 311, 314, 335
MhlI GDGCHC 1 cut(s) 98
MlyI GAGTC 2 cut(s) 299, 305
MnlI CCTC 2 cut(s) 190, 209
MvnI CGCG 1 cut(s) 267
MwoI GCNNNNNNNGC 2 cut(s) 109, 174
NlaIII CATG 2 cut(s) 70, 83
NmuCI GTSAC 1 cut(s) 308
NspI RCATGY 1 cut(s) 83
PaeI GCATGC 1 cut(s) 83
PagI TCATGA 1 cut(s) 66
PkrI GCNGC 1 cut(s) 269
PleI GAGTC 2 cut(s) 298, 305
PpsI GAGTC 2 cut(s) 298, 305
SatI GCNGC 1 cut(s) 268
SchI GAGTC 2 cut(s) 299, 305
SduI GDGCHC 1 cut(s) 98
SetI ASST 3 cut(s) 49, 136, 226
SmlI CTYRAG 1 cut(s) 26
SmoI CTYRAG 1 cut(s) 26
SphI GCATGC 1 cut(s) 83
SsiI CCGC 3 cut(s) 177, 234, 267
TaqI TCGA 1 cut(s) 75
TauI GCSGC 1 cut(s) 270
TscAI CASTG 1 cut(s) 322
TseFI GTSAC 1 cut(s) 308
Tsp45I GTSAC 1 cut(s) 308
TspDTI ATGAA 2 cut(s) 83, 336
TspRI CASTG 1 cut(s) 322
XceI RCATGY 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.