Rh4AG256600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0003469
Physical Location & Seq
Reverse (-)
57153063 .. 57153437
375 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG256600.1

Sequence Viewer

Length: 375 bp
ATGGCATCACGCCCGAAGGAAAAGATTTCTCAGGAATTCAAAGACATCTCCATCGAGGATGAAAAAGGCAAGCGCTTAGTGGCGCCACCACAGCCTGCTTCTGAGAACGGCGAAGGTGAGCGAAAGAAGGACGGCATAGGTGAGCAAAAGAAAAACGGCAAAGGTGAGCGAAAGACGAATGGCAATAAGAAAAAGAAAGGCATAGGGAAAGCTGATGTTTTCAATATTCAGGGCAACAAATTCGATGGAGGCAGCGGCAAAGCTACCAAGACCGGAGTTTTTGATTTTAATAACACGTATAGTGGCCCCAAAGTATACGAGTCAAGTGACGAAGAAAGTGACTCCTGTGATAAAGAGGCAGGGACCGCAGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

13.35

Weight (kDa)

8.87

Isoelectric Point (pI)

36.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 82
AccI GTMKAC 1 cut(s) 315
AciI CCGC 2 cut(s) 255, 366
AcsI RAATTY 2 cut(s) 35, 239
AcyI GRCGYC 1 cut(s) 83
AfeI AGCGCT 1 cut(s) 74
AflIII ACRYGT 1 cut(s) 294
AgsI TTSAA 2 cut(s) 40, 223
AluBI AGCT 2 cut(s) 212, 263
AluI AGCT 2 cut(s) 212, 263
Aor51HI AGCGCT 1 cut(s) 74
AoxI GGCC 1 cut(s) 304
ApeKI GCWGC 1 cut(s) 252
ApoI RAATTY 2 cut(s) 35, 239
AspLEI GCGC 2 cut(s) 75, 85
AspS9I GGNCC 2 cut(s) 305, 363
AsuHPI GGTGA 3 cut(s) 128, 152, 176
AvaII GGWCC 1 cut(s) 363
BanI GGYRCC 1 cut(s) 82
BbvI GCAGC 1 cut(s) 264
BccI CCATC 2 cut(s) 59, 239
BceAI ACGGC 3 cut(s) 124, 148, 172
BcgI CGANNNNNNTGC 2 cut(s) 223, 257
BfoI RGCGCY 2 cut(s) 76, 86
BisI GCNGC 2 cut(s) 253, 256
BlsI GCNGC 2 cut(s) 254, 257
Bme18I GGWCC 1 cut(s) 363
BmgT120I GGNCC 2 cut(s) 305, 363
BmiI GGNNCC 3 cut(s) 84, 307, 364
BmsI GCATC 1 cut(s) 14
BsaAI YACGTR 1 cut(s) 297
BsaHI GRCGYC 1 cut(s) 83
BsaWI WCCGGW 1 cut(s) 272
BseGI GGATG 1 cut(s) 64
BseMII CTCAG 2 cut(s) 44, 93
BseXI GCAGC 1 cut(s) 264
BshFI GGCC 1 cut(s) 306
BshNI GGYRCC 1 cut(s) 82
BsiSI CCGG 1 cut(s) 273
BsnI GGCC 1 cut(s) 306
BspACI CCGC 2 cut(s) 255, 366
BspANI GGCC 1 cut(s) 306
BspCNI CTCAG 2 cut(s) 43, 94
BspLI GGNNCC 3 cut(s) 84, 307, 364
BspT107I GGYRCC 1 cut(s) 82
BssNAI GTATAC 1 cut(s) 316
BssNI GRCGYC 1 cut(s) 83
Bst1107I GTATAC 1 cut(s) 316
BstACI GRCGYC 1 cut(s) 83
BstBAI YACGTR 1 cut(s) 297
BstC8I GCNNGC 2 cut(s) 71, 96
BstDEI CTNAG 3 cut(s) 30, 76, 102
BstF5I GGATG 1 cut(s) 64
BstH2I RGCGCY 2 cut(s) 76, 86
BstHHI GCGC 2 cut(s) 75, 85
BstMWI GCNNNNNNNGC 2 cut(s) 91, 365
BstV1I GCAGC 1 cut(s) 264
BstZ17I GTATAC 1 cut(s) 316
BsuRI GGCC 1 cut(s) 306
BtsCI GGATG 1 cut(s) 64
Cac8I GCNNGC 2 cut(s) 71, 96
CfoI GCGC 2 cut(s) 75, 85
Cfr13I GGNCC 2 cut(s) 305, 363
CviJI RGCY 4 cut(s) 94, 212, 263, 306
CviKI_1 RGCY 4 cut(s) 94, 212, 263, 306
DdeI CTNAG 3 cut(s) 30, 76, 102
DinI GGCGCC 1 cut(s) 84
Eco47I GGWCC 1 cut(s) 363
Eco47III AGCGCT 1 cut(s) 74
EcoRI GAATTC 1 cut(s) 35
EgeI GGCGCC 1 cut(s) 84
EheI GGCGCC 1 cut(s) 84
FaiI YATR 4 cut(s) 137, 203, 300, 316
FblI GTMKAC 1 cut(s) 315
Fnu4HI GCNGC 2 cut(s) 253, 256
FokI GGATG 1 cut(s) 71
Fsp4HI GCNGC 2 cut(s) 253, 256
GlaI GCGC 2 cut(s) 74, 84
GluI GCNGC 2 cut(s) 253, 256
HaeII RGCGCY 2 cut(s) 76, 86
HaeIII GGCC 1 cut(s) 306
HapII CCGG 1 cut(s) 273
HhaI GCGC 2 cut(s) 75, 85
Hin1I GRCGYC 1 cut(s) 83
Hin6I GCGC 2 cut(s) 73, 83
HinP1I GCGC 2 cut(s) 73, 83
HinfI GANTC 2 cut(s) 320, 341
HpaII CCGG 1 cut(s) 273
HphI GGTGA 3 cut(s) 128, 152, 176
Hpy166II GTNNAC 1 cut(s) 316
Hpy188I TCNGA 1 cut(s) 103
Hpy188III TCNNGA 1 cut(s) 32
Hpy8I GTNNAC 1 cut(s) 316
HpyAV CCTTC 3 cut(s) 10, 107, 121
HpyCH4IV ACGT 1 cut(s) 296
HpyF10VI GCNNNNNNNGC 2 cut(s) 91, 365
HpyF3I CTNAG 3 cut(s) 30, 76, 102
HpySE526I ACGT 1 cut(s) 296
Hsp92I GRCGYC 1 cut(s) 83
HspAI GCGC 2 cut(s) 73, 83
KasI GGCGCC 1 cut(s) 82
LpnPI CCDG 7 cut(s) 17, 108, 215, 286, 345, 354, 358
Lsp1109I GCAGC 1 cut(s) 264
LweI GCATC 1 cut(s) 14
MaeII ACGT 1 cut(s) 296
MaeIII GTNAC 2 cut(s) 326, 338
MboII GAAGA 1 cut(s) 344
MluCI AATT 2 cut(s) 35, 239
Mly113I GGCGCC 1 cut(s) 83
MlyI GAGTC 2 cut(s) 329, 335
MnlI CCTC 3 cut(s) 49, 242, 349
MseI TTAA 1 cut(s) 288
MspA1I CMGCKG 1 cut(s) 255
MspI CCGG 1 cut(s) 273
MwoI GCNNNNNNNGC 2 cut(s) 91, 365
NarI GGCGCC 1 cut(s) 83
NlaIV GGNNCC 3 cut(s) 84, 307, 364
NmuCI GTSAC 2 cut(s) 326, 338
PkrI GCNGC 2 cut(s) 254, 257
PleI GAGTC 2 cut(s) 328, 335
PluTI GGCGCC 1 cut(s) 86
PpsI GAGTC 2 cut(s) 328, 335
Ppu21I YACGTR 1 cut(s) 297
PspN4I GGNNCC 3 cut(s) 84, 307, 364
PspPI GGNCC 2 cut(s) 305, 363
SaqAI TTAA 1 cut(s) 288
SatI GCNGC 2 cut(s) 253, 256
Sau96I GGNCC 2 cut(s) 305, 363
SchI GAGTC 2 cut(s) 329, 335
SetI ASST 6 cut(s) 118, 142, 166, 214, 265, 299
SfaNI GCATC 1 cut(s) 14
SfoI GGCGCC 1 cut(s) 84
SinI GGWCC 1 cut(s) 363
Sse9I AATT 2 cut(s) 35, 239
SsiI CCGC 2 cut(s) 255, 366
SspDI GGCGCC 1 cut(s) 82
SspI AATATT 1 cut(s) 226
TaiI ACGT 1 cut(s) 299
TaqI TCGA 2 cut(s) 54, 243
TasI AATT 2 cut(s) 35, 239
TauI GCSGC 1 cut(s) 258
Tru1I TTAA 1 cut(s) 288
Tru9I TTAA 1 cut(s) 288
TseFI GTSAC 2 cut(s) 326, 338
TseI GCWGC 1 cut(s) 252
Tsp45I GTSAC 2 cut(s) 326, 338
TspDTI ATGAA 1 cut(s) 75
VpaK11BI GGWCC 1 cut(s) 363
XapI RAATTY 2 cut(s) 35, 239
XmiI GTMKAC 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.