Rh4BG262100

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
Physical Location & Seq
Reverse (-)
43544688 .. 43545202
515 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG262100.1

Sequence Viewer

Length: 330 bp
ATGGCATCTGTAGGCCAGATATTTCTAAAGTCTCAGAAGCCAGAAGGTTCTGATAAATCCAAAGTCATGAACATCGGGCATGCAAATGGCAAGGGCTCAGCGCCACCACAGCCTGCTTCTAAGAACGGCAAAGGTGAGCAAAAGAAGAATGGCAATAAGAAAAAGAAAGGCAAAAGGAACGGTGATGTTTTTACGGTTGAGGGCAACGAAATCAATGGAGGCAAAGCTGACAAGTGCGGAGTTTTTGGATTTGGTAACAAGTATTATGGCGGCAAGAAACCAAAAGAAGATGAGTCAAGTGAAGAAGAAAGTGACTCCAGTGATGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

11.55

Weight (kDa)

9.26

Isoelectric Point (pI)

38.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 237, 270
AluBI AGCT 1 cut(s) 227
AluI AGCT 1 cut(s) 227
Alw26I GTCTC 1 cut(s) 36
AoxI GGCC 1 cut(s) 13
AspLEI GCGC 1 cut(s) 103
AsuHPI GGTGA 2 cut(s) 146, 194
BanII GRGCYC 1 cut(s) 98
BceAI ACGGC 1 cut(s) 142
BcoDI GTCTC 1 cut(s) 36
BfmI CTRYAG 1 cut(s) 9
BfoI RGCGCY 1 cut(s) 104
BisI GCNGC 1 cut(s) 271
BlpI GCTNAGC 1 cut(s) 97
BlsI GCNGC 1 cut(s) 272
BmsI GCATC 1 cut(s) 14
BpmI CTGGAG 1 cut(s) 301
Bpu1102I GCTNAGC 1 cut(s) 97
Bse1I ACTGG 1 cut(s) 318
BseMII CTCAG 2 cut(s) 47, 111
BseNI ACTGG 1 cut(s) 318
BshFI GGCC 1 cut(s) 15
BsmAI GTCTC 1 cut(s) 36
BsnI GGCC 1 cut(s) 15
Bsp1286I GDGCHC 1 cut(s) 98
Bsp1720I GCTNAGC 1 cut(s) 97
BspACI CCGC 2 cut(s) 237, 270
BspANI GGCC 1 cut(s) 15
BspCNI CTCAG 2 cut(s) 46, 110
BspHI TCATGA 1 cut(s) 66
BsrI ACTGG 1 cut(s) 318
Bst4CI ACNGT 2 cut(s) 182, 196
BstC8I GCNNGC 2 cut(s) 81, 114
BstDEI CTNAG 3 cut(s) 33, 97, 120
BstH2I RGCGCY 1 cut(s) 104
BstHHI GCGC 1 cut(s) 103
BstMAI GTCTC 1 cut(s) 36
BstMWI GCNNNNNNNGC 1 cut(s) 109
BstNSI RCATGY 1 cut(s) 83
BstSFI CTRYAG 1 cut(s) 9
BsuRI GGCC 1 cut(s) 15
BtsIMutI CAGTG 1 cut(s) 325
Cac8I GCNNGC 2 cut(s) 81, 114
CciI TCATGA 1 cut(s) 66
CfoI GCGC 1 cut(s) 103
CviAII CATG 2 cut(s) 67, 80
CviJI RGCY 5 cut(s) 15, 40, 96, 112, 227
CviKI_1 RGCY 5 cut(s) 15, 40, 96, 112, 227
DdeI CTNAG 3 cut(s) 33, 97, 120
Eco24I GRGCYC 1 cut(s) 98
EcoT38I GRGCYC 1 cut(s) 98
FaeI CATG 2 cut(s) 70, 83
FaiI YATR 3 cut(s) 68, 81, 267
FatI CATG 2 cut(s) 66, 79
Fnu4HI GCNGC 1 cut(s) 271
FriOI GRGCYC 1 cut(s) 98
Fsp4HI GCNGC 1 cut(s) 271
GlaI GCGC 1 cut(s) 102
GluI GCNGC 1 cut(s) 271
GsuI CTGGAG 1 cut(s) 301
HaeII RGCGCY 1 cut(s) 104
HaeIII GGCC 1 cut(s) 15
HhaI GCGC 1 cut(s) 103
Hin1II CATG 2 cut(s) 70, 83
Hin6I GCGC 1 cut(s) 101
HinP1I GCGC 1 cut(s) 101
HinfI GANTC 2 cut(s) 293, 314
HphI GGTGA 2 cut(s) 146, 194
Hpy188I TCNGA 2 cut(s) 36, 52
Hpy188III TCNNGA 1 cut(s) 67
HpyAV CCTTC 1 cut(s) 38
HpyCH4III ACNGT 2 cut(s) 182, 196
HpyCH4V TGCA 1 cut(s) 83
HpyF10VI GCNNNNNNNGC 1 cut(s) 109
HpyF3I CTNAG 3 cut(s) 33, 97, 120
Hsp92II CATG 2 cut(s) 70, 83
HspAI GCGC 1 cut(s) 101
LpnPI CCDG 3 cut(s) 29, 54, 126
LweI GCATC 1 cut(s) 14
MaeIII GTNAC 2 cut(s) 254, 311
MboII GAAGA 4 cut(s) 157, 299, 314, 317
MhlI GDGCHC 1 cut(s) 98
MlyI GAGTC 2 cut(s) 302, 308
MnlI CCTC 2 cut(s) 193, 212
MslI CAYNNNNRTG 1 cut(s) 84
MwoI GCNNNNNNNGC 1 cut(s) 109
NlaIII CATG 2 cut(s) 70, 83
NmuCI GTSAC 1 cut(s) 311
NspI RCATGY 1 cut(s) 83
PaeI GCATGC 1 cut(s) 83
PagI TCATGA 1 cut(s) 66
PkrI GCNGC 1 cut(s) 272
PleI GAGTC 2 cut(s) 301, 308
PpsI GAGTC 2 cut(s) 301, 308
RseI CAYNNNNRTG 1 cut(s) 84
SatI GCNGC 1 cut(s) 271
SchI GAGTC 2 cut(s) 302, 308
SduI GDGCHC 1 cut(s) 98
SetI ASST 3 cut(s) 49, 136, 229
SfaNI GCATC 1 cut(s) 14
SfcI CTRYAG 1 cut(s) 9
SmiMI CAYNNNNRTG 1 cut(s) 84
SphI GCATGC 1 cut(s) 83
SsiI CCGC 2 cut(s) 237, 270
TaaI ACNGT 2 cut(s) 182, 196
TauI GCSGC 1 cut(s) 273
TscAI CASTG 1 cut(s) 325
TseFI GTSAC 1 cut(s) 311
Tsp45I GTSAC 1 cut(s) 311
TspDTI ATGAA 1 cut(s) 83
TspRI CASTG 1 cut(s) 325
XceI RCATGY 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.