Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007418.1

Orthogroup ID

OG0005591

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1340

Gene Structure 1340 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007418.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 956 bp

ccagggaaagttttcctgaggatggtgaaccagctcgtaagagcaagaggattcctaggagacgtgtcttggatgtgggacttagtgaagatggtaatgaagatggtgaaattcgattccttgaaagactaaatgcttctaaggttgctctttcaaagagcaatcaaatggatggtgatcatggaggtgatattggaaactgtaaattaccaaggctgcggaaacatggtggaataaagtcaagatcagaaaaaatgtacgaggataaagactatttgggagaagaagaagaactgacatctgacgatgaacttcaatctaatgggaagacactgaaaaggggatctcttagtttacttctggaagggccgcaaaagtccacacccaccacacgtaaccgggcccttcagtctgggatagatatcttaactggttatggttcaagcgttgttaaccctgcaaatcttttttttactggctggttgaccacagaaaagaaggagaaaatctctgaagtggataagcaatcaaagaaagccgaggctgcacagagacgtaaaatacaaacagagaagatagctagagaagctgaggctgaggcaatcagaaagatacttggtcaagattcgaagaagaagaagagggaagaagaactgaagcagaagagggatgaattgtcacaggggaggaatggcagtgctgtcacactggcaccaaacactgtccgatgggtcaatggtcctaatggaacggtcgttacattctctgatgatattggtctgccgaacattttcagtccagtgccctgcagctaccctcccccacgtgaaaaatgtgctggcccaaattgtacaaatgcatacaagtatcgggattctaagtccaagctccccctttgcagtctccactgctacagggcattgcacggaaaggcgcagcctctaattgcttgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAPA-1 zf-HIT

Protein Analysis

317

Amino Acids

35.27

Weight (kDa)

9.22

Isoelectric Point (pI)

51.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005591)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06660
fragaria_vesca	FvH4_4g19561 FvH4_4g19561 FvH4_4g19561 FvH4_4g19561 FvH4_4g19561
malus_domestica	MD13G1155600.v1.1 MD16G1155300.v1.1
prunus_persica	Prupe.1G118900_v2.0.a1 Prupe.1G118900_v2.0.a1 Prupe.1G118900_v2.0.a1 Prupe.1G118900_v2.0.a1 Prupe.1G118900_v2.0.a1 Prupe.1G118900_v2.0.a1 Prupe.1G118900_v2.0.a1
pyrus_communis	pycom13g13260
rosa_chinensis	RchiOBHm_Chr4g0424821
rosa_laevigata	RLG00000007419
rosa_multiflora	Rmu_sc0003608.1_g000022 Rmu_sc0007418.1_g000001
rosa_roxburghii	Rroxscaffold_5G00367040
rosa_rugosa	Rorug04G0199300
rosa_samantha	Rh4AG257100 Rh4BG262400 Rh4CG273400 Rh4DG258200
rosa_wichuraiana	Rw4G022180 Rw4G024040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	711
AciI	CCGC	2 cut(s)	219, 370
AclWI	GGATC	1 cut(s)	351
AcsI	RAATTY	1 cut(s)	110
AcuI	CTGAAG	3 cut(s)	391, 533, 676
AcvI	CACGTG	1 cut(s)	826
AfaI	GTAC	2 cut(s)	259, 852
AfiI	CCNNNNNNNGG	1 cut(s)	22
AflIII	ACRYGT	2 cut(s)	63, 391
AgsI	TTSAA	4 cut(s)	124, 155, 316, 443
AjiI	CACGTC	1 cut(s)	64
AluBI	AGCT	5 cut(s)	34, 580, 589, 812, 888
AluI	AGCT	5 cut(s)	34, 580, 589, 812, 888
Alw26I	GTCTC	3 cut(s)	54, 546, 907
AlwI	GGATC	1 cut(s)	351
AoxI	GGCC	3 cut(s)	367, 401, 840
ApaI	GGGCCC	1 cut(s)	405
ApeKI	GCWGC	4 cut(s)	216, 544, 809, 936
ApoI	RAATTY	1 cut(s)	110
Asp700I	GAANNNNTTC	2 cut(s)	11, 790
AspA2I	CCTAGG	1 cut(s)	55
AspLEI	GCGC	1 cut(s)	936
AspS9I	GGNCC	5 cut(s)	367, 401, 402, 739, 841
AsuC2I	CCSGG	1 cut(s)	400
AsuHPI	GGTGA	4 cut(s)	37, 118, 187, 199
AsuII	TTCGAA	1 cut(s)	628
AvaII	GGWCC	1 cut(s)	739
AvrII	CCTAGG	1 cut(s)	55
AxyI	CCTNAGG	1 cut(s)	17
BaeGI	GKGCMC	2 cut(s)	405, 806
BanI	GGYRCC	1 cut(s)	711
BanII	GRGCYC	1 cut(s)	405
BbrPI	CACGTG	1 cut(s)	826
BbsI	GAAGAC	1 cut(s)	334
BbvCI	CCTCAGC	2 cut(s)	590, 596
BbvI	GCAGC	4 cut(s)	203, 531, 821, 948
BccI	CCATC	5 cut(s)	16, 85, 97, 166, 722
BciT130I	CCWGG	1 cut(s)	3
BclI	TGATCA	1 cut(s)	177
BcnI	CCSGG	1 cut(s)	400
BcoDI	GTCTC	3 cut(s)	54, 546, 907
BfaI	CTAG	2 cut(s)	56, 581
BfmI	CTRYAG	2 cut(s)	807, 912
BisI	GCNGC	5 cut(s)	217, 370, 545, 810, 937
BlnI	CCTAGG	1 cut(s)	55
BlsI	GCNGC	5 cut(s)	218, 371, 546, 811, 938
Bme1390I	CCNGG	2 cut(s)	3, 400
Bme18I	GGWCC	1 cut(s)	739
BmgBI	CACGTC	1 cut(s)	64
BmgT120I	GGNCC	5 cut(s)	367, 401, 402, 739, 841
BmiI	GGNNCC	2 cut(s)	403, 713
BmrFI	CCNGG	2 cut(s)	3, 400
BpiI	GAAGAC	1 cut(s)	334
BplI	GAGNNNNNCTC	2 cut(s)	493, 525
Bpu10I	CCTNAGC	2 cut(s)	590, 596
Bpu14I	TTCGAA	1 cut(s)	628
BpuMI	CCSGG	1 cut(s)	400
BsaAI	YACGTR	2 cut(s)	394, 826
BsaBI	GATNNNNATC	2 cut(s)	176, 421
BsaJI	CCNNGG	4 cut(s)	2, 55, 211, 539
Bsc4I	CCNNNNNNNGG	1 cut(s)	22
Bse1I	ACTGG	4 cut(s)	435, 480, 713, 799
Bse21I	CCTNAGG	1 cut(s)	17
Bse3DI	GCAATG	1 cut(s)	919
Bse8I	GATNNNNATC	2 cut(s)	176, 421
BseBI	CCWGG	1 cut(s)	3
BseDI	CCNNGG	4 cut(s)	2, 55, 211, 539
BseGI	GGATG	4 cut(s)	27, 78, 177, 675
BseJI	GATNNNNATC	2 cut(s)	176, 421
BseLI	CCNNNNNNNGG	1 cut(s)	22
BseMI	GCAATG	1 cut(s)	919
BseMII	CTCAG	3 cut(s)	8, 581, 587
BseNI	ACTGG	4 cut(s)	435, 480, 713, 799
BseSI	GKGCMC	2 cut(s)	405, 806
BseXI	GCAGC	4 cut(s)	203, 531, 821, 948
BsgI	GTGCAG	1 cut(s)	530
Bsh1285I	CGRYCG	1 cut(s)	755
BshFI	GGCC	3 cut(s)	369, 403, 842
BshNI	GGYRCC	1 cut(s)	711
BsiEI	CGRYCG	1 cut(s)	755
BsiSI	CCGG	1 cut(s)	399
BslFI	GGGAC	1 cut(s)	92
BslI	CCNNNNNNNGG	1 cut(s)	22
BsmAI	GTCTC	3 cut(s)	54, 546, 907
BsmBI	CGTCTC	2 cut(s)	54, 546
BsmFI	GGGAC	1 cut(s)	92
BsnI	GGCC	3 cut(s)	369, 403, 842
Bsp119I	TTCGAA	1 cut(s)	628
Bsp120I	GGGCCC	1 cut(s)	401
Bsp1286I	GDGCHC	2 cut(s)	405, 806
Bsp1407I	TGTACA	1 cut(s)	850
Bsp143I	GATC	3 cut(s)	177, 244, 343
BspACI	CCGC	2 cut(s)	219, 370
BspANI	GGCC	3 cut(s)	369, 403, 842
BspCNI	CTCAG	3 cut(s)	9, 582, 588
BspLI	GGNNCC	2 cut(s)	403, 713
BspMAI	CTGCAG	1 cut(s)	811
BspPI	GGATC	1 cut(s)	351
BspT104I	TTCGAA	1 cut(s)	628
BspT107I	GGYRCC	1 cut(s)	711
BsrDI	GCAATG	1 cut(s)	919
BsrGI	TGTACA	1 cut(s)	850
BsrI	ACTGG	4 cut(s)	435, 480, 713, 799
BssECI	CCNNGG	4 cut(s)	2, 55, 211, 539
BssMI	GATC	3 cut(s)	177, 244, 343
BssT1I	CCWWGG	2 cut(s)	55, 211
Bst2UI	CCWGG	1 cut(s)	3
Bst4CI	ACNGT	3 cut(s)	202, 723, 753
Bst6I	CTCTTC	2 cut(s)	634, 658
BstAUI	TGTACA	1 cut(s)	850
BstBAI	YACGTR	2 cut(s)	394, 826
BstBI	TTCGAA	1 cut(s)	628
BstC8I	GCNNGC	1 cut(s)	840
BstDEI	CTNAG	7 cut(s)	17, 82, 140, 349, 590, 596, 878
BstF5I	GGATG	4 cut(s)	27, 78, 177, 675
BstHHI	GCGC	1 cut(s)	936
BstKTI	GATC	3 cut(s)	180, 247, 346
BstMAI	GTCTC	3 cut(s)	54, 546, 907
BstMBI	GATC	3 cut(s)	177, 244, 343
BstMCI	CGRYCG	1 cut(s)	755
BstMWI	GCNNNNNNNGC	2 cut(s)	544, 586
BstNI	CCWGG	1 cut(s)	3
BstSCI	CCNGG	1 cut(s)	398
BstSFI	CTRYAG	2 cut(s)	807, 912
BstSLI	GKGCMC	2 cut(s)	405, 806
BstV1I	GCAGC	4 cut(s)	203, 531, 821, 948
BstV2I	GAAGAC	1 cut(s)	334
BstX2I	RGATCY	1 cut(s)	343
BstYI	RGATCY	1 cut(s)	343
Bsu36I	CCTNAGG	1 cut(s)	17
BsuRI	GGCC	3 cut(s)	369, 403, 842
BtrI	CACGTC	1 cut(s)	64
BtsCI	GGATG	4 cut(s)	27, 78, 177, 675
BtsI	GCAGTG	2 cut(s)	702, 906
BtsIMutI	CAGTG	6 cut(s)	331, 702, 706, 719, 806, 906
Cac8I	GCNNGC	1 cut(s)	840
CfoI	GCGC	1 cut(s)	936
Cfr13I	GGNCC	5 cut(s)	367, 401, 402, 739, 841
Csp6I	GTAC	2 cut(s)	258, 851
CviAII	CATG	2 cut(s)	181, 226
CviQI	GTAC	2 cut(s)	258, 851
DdeI	CTNAG	7 cut(s)	17, 82, 140, 349, 590, 596, 878
DpnI	GATC	3 cut(s)	179, 246, 345
DpnII	GATC	3 cut(s)	177, 244, 343
Eam1104I	CTCTTC	2 cut(s)	634, 658
EarI	CTCTTC	2 cut(s)	634, 658
Eco130I	CCWWGG	2 cut(s)	55, 211
Eco24I	GRGCYC	1 cut(s)	405
Eco32I	GATATC	1 cut(s)	423
Eco47I	GGWCC	1 cut(s)	739
Eco57I	CTGAAG	3 cut(s)	391, 533, 676
Eco72I	CACGTG	1 cut(s)	826
Eco81I	CCTNAGG	1 cut(s)	17
EcoO109I	RGGNCCY	1 cut(s)	402
EcoRV	GATATC	1 cut(s)	423
EcoT14I	CCWWGG	2 cut(s)	55, 211
EcoT22I	ATGCAT	1 cut(s)	861
EcoT38I	GRGCYC	1 cut(s)	405
ErhI	CCWWGG	2 cut(s)	55, 211
Esp3I	CGTCTC	2 cut(s)	54, 546
FaeI	CATG	2 cut(s)	184, 229
FaiI	YATR	4 cut(s)	182, 227, 437, 861
FaqI	GGGAC	1 cut(s)	92
FatI	CATG	2 cut(s)	180, 225
FbaI	TGATCA	1 cut(s)	177
Fnu4HI	GCNGC	5 cut(s)	217, 370, 545, 810, 937
FokI	GGATG	4 cut(s)	34, 85, 184, 682
FriOI	GRGCYC	1 cut(s)	405
Fsp4HI	GCNGC	5 cut(s)	217, 370, 545, 810, 937
FspBI	CTAG	2 cut(s)	56, 581
GlaI	GCGC	1 cut(s)	935
GluI	GCNGC	5 cut(s)	217, 370, 545, 810, 937
HaeIII	GGCC	3 cut(s)	369, 403, 842
HapII	CCGG	1 cut(s)	399
HhaI	GCGC	1 cut(s)	936
Hin1II	CATG	2 cut(s)	184, 229
Hin6I	GCGC	1 cut(s)	934
HinP1I	GCGC	1 cut(s)	934
HincII	GTYRAC	2 cut(s)	453, 485
HindII	GTYRAC	2 cut(s)	453, 485
HinfI	GANTC	4 cut(s)	51, 116, 625, 874
HpaI	GTTAAC	1 cut(s)	453
HpaII	CCGG	1 cut(s)	399
HphI	GGTGA	4 cut(s)	37, 118, 187, 199
Hpy166II	GTNNAC	5 cut(s)	28, 355, 380, 453, 485
Hpy188I	TCNGA	6 cut(s)	249, 303, 513, 607, 727, 768
Hpy188III	TCNNGA	5 cut(s)	16, 242, 361, 622, 871
Hpy8I	GTNNAC	5 cut(s)	28, 355, 380, 453, 485
HpyAV	CCTTC	3 cut(s)	358, 415, 492
HpyCH4III	ACNGT	3 cut(s)	202, 723, 753
HpyCH4IV	ACGT	4 cut(s)	63, 393, 555, 825
HpyCH4V	TGCA	6 cut(s)	460, 547, 809, 859, 899, 924
HpyF10VI	GCNNNNNNNGC	2 cut(s)	544, 586
HpyF3I	CTNAG	7 cut(s)	17, 82, 140, 349, 590, 596, 878
HpySE526I	ACGT	4 cut(s)	63, 393, 555, 825
Hsp92II	CATG	2 cut(s)	184, 229
HspAI	GCGC	1 cut(s)	934
Ksp22I	TGATCA	1 cut(s)	177
KspAI	GTTAAC	1 cut(s)	453
Kzo9I	GATC	3 cut(s)	177, 244, 343
LmnI	GCTCC	1 cut(s)	893
Lsp1109I	GCAGC	4 cut(s)	203, 531, 821, 948
MaeI	CTAG	2 cut(s)	56, 581
MaeII	ACGT	4 cut(s)	63, 393, 555, 825
MaeIII	GTNAC	4 cut(s)	394, 677, 702, 756
MalI	GATC	3 cut(s)	179, 246, 345
MboI	GATC	3 cut(s)	177, 244, 343
MflI	RGATCY	1 cut(s)	343
MhlI	GDGCHC	2 cut(s)	405, 806
MluCI	AATT	5 cut(s)	110, 205, 673, 846, 944
Mph1103I	ATGCAT	1 cut(s)	861
MroXI	GAANNNNTTC	2 cut(s)	11, 790
MseI	TTAA	2 cut(s)	427, 452
MslI	CAYNNNNRTG	1 cut(s)	185
MspI	CCGG	1 cut(s)	399
MspR9I	CCNGG	2 cut(s)	3, 400
MvaI	CCWGG	1 cut(s)	3
MwoI	GCNNNNNNNGC	2 cut(s)	544, 586
NciI	CCSGG	1 cut(s)	400
NdeII	GATC	3 cut(s)	177, 244, 343
NlaIII	CATG	2 cut(s)	184, 229
NlaIV	GGNNCC	2 cut(s)	403, 713
NmeAIII	GCCGAG	1 cut(s)	564
NmuCI	GTSAC	2 cut(s)	677, 702
NsiI	ATGCAT	1 cut(s)	861
NspV	TTCGAA	1 cut(s)	628
PdmI	GAANNNNTTC	2 cut(s)	11, 790
PfeI	GAWTC	4 cut(s)	51, 116, 625, 874
PkrI	GCNGC	5 cut(s)	218, 371, 546, 811, 938
PmaCI	CACGTG	1 cut(s)	826
PmlI	CACGTG	1 cut(s)	826
Ppu21I	YACGTR	2 cut(s)	394, 826
PspCI	CACGTG	1 cut(s)	826
PspN4I	GGNNCC	2 cut(s)	403, 713
PspOMI	GGGCCC	1 cut(s)	401
PspPI	GGNCC	5 cut(s)	367, 401, 402, 739, 841
PsrI	GAACNNNNNNTAC	2 cut(s)	741, 773
PstI	CTGCAG	1 cut(s)	811
PsuI	RGATCY	1 cut(s)	343
RsaI	GTAC	2 cut(s)	259, 852
RsaNI	GTAC	2 cut(s)	258, 851
RseI	CAYNNNNRTG	1 cut(s)	185
SaqAI	TTAA	2 cut(s)	427, 452
SatI	GCNGC	5 cut(s)	217, 370, 545, 810, 937
Sau3AI	GATC	3 cut(s)	177, 244, 343
Sau96I	GGNCC	5 cut(s)	367, 401, 402, 739, 841
ScrFI	CCNGG	2 cut(s)	3, 400
SduI	GDGCHC	2 cut(s)	405, 806
SfcI	CTRYAG	2 cut(s)	807, 912
SfuI	TTCGAA	1 cut(s)	628
SinI	GGWCC	1 cut(s)	739
SmiMI	CAYNNNNRTG	1 cut(s)	185
Sse9I	AATT	5 cut(s)	110, 205, 673, 846, 944
SsiI	CCGC	2 cut(s)	219, 370
SspMI	CTAG	2 cut(s)	56, 581
StyD4I	CCNGG	1 cut(s)	398
StyI	CCWWGG	2 cut(s)	55, 211
TaaI	ACNGT	3 cut(s)	202, 723, 753
TaiI	ACGT	4 cut(s)	66, 396, 558, 828
TaqI	TCGA	2 cut(s)	114, 628
TasI	AATT	5 cut(s)	110, 205, 673, 846, 944
TatI	WGTACW	1 cut(s)	850
TauI	GCSGC	1 cut(s)	372
TfiI	GAWTC	4 cut(s)	51, 116, 625, 874
Tru1I	TTAA	2 cut(s)	427, 452
Tru9I	TTAA	2 cut(s)	427, 452
TscAI	CASTG	6 cut(s)	338, 702, 713, 726, 806, 913
TseFI	GTSAC	2 cut(s)	677, 702
TseI	GCWGC	4 cut(s)	216, 544, 809, 936
Tsp45I	GTSAC	2 cut(s)	677, 702
TspDTI	ATGAA	3 cut(s)	113, 323, 686
TspGWI	ACGGA	1 cut(s)	941
TspRI	CASTG	6 cut(s)	338, 702, 713, 726, 806, 913
VpaK11BI	GGWCC	1 cut(s)	739
XapI	RAATTY	1 cut(s)	110
XmaJI	CCTAGG	1 cut(s)	55
XmnI	GAANNNNTTC	2 cut(s)	11, 790
XspI	CTAG	2 cut(s)	56, 581
Zsp2I	ATGCAT	1 cut(s)	861

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.