Rmu_sc0003608.1_g000022

PAPA-1-like conserved region

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003608.1
Physical Location & Seq
Reverse (-)
70078 .. 72193
2116 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003608.1_g000022.1.cds

Sequence Viewer

Length: 1446 bp
atggaaagctttggtggctctggattttctgctggaggatgcattgttaggaagaaaaggagtgttgtatcgcataaacctcgcttggatccactcacattttctgagaggtctaatatcttgctacgaattgtacatccctttggcaaagagagccttgataagaatcatgatagtaaggagaacggagtgcattctgatggactgcgaagtgagaaaaggccgaagaaattaaagcttaagcttcgaggtgttactcatacaatccaaaccaagtgtacagttgattctaatcttggtggtggctcttccatacctaaatcctcatgcccttccgatgtcttcataccccaaccgaagccacttgtccaggatggcaaacccttctgttcttctgatagaggcaaaggcattggagttaaacggaaatactccttgaaaattgactcaactttgagaaaggagtattctttgaaaggtaaaatctccagggaaagttttcctgaggatggtgaaccagctcgtaagagcaagaggattcctaggagacgtgtcttggatgtgggacatagtgaagatggtaatgaagatggtgaaattcgattccttgaaagactaaatgcttctaaggttgctctttcaaagagcaatcaaatggatggcgatcatggaggtgatattggaaactgtaaattaccaaggctgcggaaacatggtggaataaagtcaagatcagaaaatatgtatgaggataaagactatttgggagaagaagaagaacaactgacatctgatgatgaacttcaatctaatgggaagacactgaaaaggggatctcttagtttacttctggaagggccgcaaaagtccacacccaccacacgtaaccgggcccttcagtctgggatagatatcttaactggttatggttcaagcgttgttaaccctgcaaatcttttttttactggctggttgaccacagaaaagaaggagaaaatctctgaagtggataagcaatcaaagaaagccgaggctgcacagagacgtaaaatacaaacagagaagatagctagagaagctgaggccgaggcaatcagaaagatacttggtcaagattcgaagaagaagaagagggaagaagaactgaagcagaagagggatgaattgtcacaggggaggaatggcagtgctgtcacactggcaccaaacactgtccgatgggtcaatggtcctaatggaacggtcgttacattctctgatgatattggtctgccgaacattttcagtccagtgccctgcagctaccctcccccacgtgaaaaatgtgctggtccaaattgtacaaatgcatacaagtatcgggattctaagtccaagctccccctttgcagtctccactgctacagggcattgcacggaaagacgcagcctctaattgcttgttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

481

Amino Acids

53.28

Weight (kDa)

9.61

Isoelectric Point (pI)

49.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1201
AciI CCGC 2 cut(s) 706, 860
AclWI GGATC 3 cut(s) 83, 96, 841
AcsI RAATTY 1 cut(s) 597
AcuI CTGAAG 3 cut(s) 881, 1023, 1166
AcvI CACGTG 1 cut(s) 1316
AfaI GTAC 3 cut(s) 135, 280, 1342
AfiI CCNNNNNNNGG 1 cut(s) 509
AflII CTTAAG 1 cut(s) 239
AflIII ACRYGT 2 cut(s) 550, 881
AgsI TTSAA 6 cut(s) 439, 475, 611, 642, 806, 933
AjiI CACGTC 1 cut(s) 551
AjnI CCWGG 2 cut(s) 369, 488
AluBI AGCT 8 cut(s) 9, 238, 244, 521, 1070, 1079, 1302, 1378
AluI AGCT 8 cut(s) 9, 238, 244, 521, 1070, 1079, 1302, 1378
Alw26I GTCTC 3 cut(s) 541, 1036, 1397
AlwI GGATC 3 cut(s) 83, 96, 841
AoxI GGCC 4 cut(s) 221, 857, 891, 1083
ApaI GGGCCC 1 cut(s) 895
ApeKI GCWGC 4 cut(s) 703, 1034, 1299, 1426
ApoI RAATTY 1 cut(s) 597
Asp700I GAANNNNTTC 2 cut(s) 498, 1280
AspA2I CCTAGG 1 cut(s) 542
AspS9I GGNCC 5 cut(s) 857, 891, 892, 1229, 1331
AsuC2I CCSGG 1 cut(s) 890
AsuHPI GGTGA 3 cut(s) 524, 605, 686
AsuII TTCGAA 1 cut(s) 1118
AvaII GGWCC 2 cut(s) 1229, 1331
AvrII CCTAGG 1 cut(s) 542
AxyI CCTNAGG 1 cut(s) 504
BaeGI GKGCMC 2 cut(s) 895, 1296
BamHI GGATCC 1 cut(s) 88
BanI GGYRCC 1 cut(s) 1201
BanII GRGCYC 1 cut(s) 895
BbrPI CACGTG 1 cut(s) 1316
BbsI GAAGAC 2 cut(s) 334, 824
BbvCI CCTCAGC 1 cut(s) 1080
BbvI GCAGC 4 cut(s) 690, 1021, 1311, 1438
BccI CCATC 7 cut(s) 194, 368, 503, 572, 584, 653, 1212
BcgI CGANNNNNNTGC 2 cut(s) 62, 96
BciT130I CCWGG 2 cut(s) 371, 490
BcnI CCSGG 1 cut(s) 890
BcoDI GTCTC 3 cut(s) 541, 1036, 1397
BfaI CTAG 2 cut(s) 543, 1071
BfmI CTRYAG 2 cut(s) 1297, 1402
BfrI CTTAAG 1 cut(s) 239
BisI GCNGC 5 cut(s) 704, 860, 1035, 1300, 1427
BlnI CCTAGG 1 cut(s) 542
BlsI GCNGC 5 cut(s) 705, 861, 1036, 1301, 1428
Bme1390I CCNGG 3 cut(s) 371, 490, 890
Bme18I GGWCC 2 cut(s) 1229, 1331
BmgBI CACGTC 1 cut(s) 551
BmgT120I GGNCC 5 cut(s) 857, 891, 892, 1229, 1331
BmiI GGNNCC 3 cut(s) 90, 893, 1203
BmrFI CCNGG 3 cut(s) 371, 490, 890
BmsI GCATC 1 cut(s) 29
BpiI GAAGAC 2 cut(s) 334, 824
BplI GAGNNNNNCTC 2 cut(s) 983, 1015
BpmI CTGGAG 2 cut(s) 54, 472
Bpu10I CCTNAGC 1 cut(s) 1080
Bpu14I TTCGAA 1 cut(s) 1118
BpuMI CCSGG 1 cut(s) 890
BsaAI YACGTR 2 cut(s) 884, 1316
BsaBI GATNNNNATC 4 cut(s) 165, 291, 663, 911
BsaJI CCNNGG 5 cut(s) 489, 542, 698, 1029, 1086
Bsc4I CCNNNNNNNGG 1 cut(s) 509
Bse1I ACTGG 4 cut(s) 925, 970, 1203, 1289
Bse21I CCTNAGG 1 cut(s) 504
Bse3DI GCAATG 1 cut(s) 1409
Bse8I GATNNNNATC 4 cut(s) 165, 291, 663, 911
BseBI CCWGG 2 cut(s) 371, 490
BseDI CCNNGG 5 cut(s) 489, 542, 698, 1029, 1086
BseGI GGATG 7 cut(s) 44, 136, 379, 514, 565, 664, 1165
BseJI GATNNNNATC 4 cut(s) 165, 291, 663, 911
BseLI CCNNNNNNNGG 1 cut(s) 509
BseMI GCAATG 1 cut(s) 1409
BseMII CTCAG 3 cut(s) 96, 495, 1071
BseNI ACTGG 4 cut(s) 925, 970, 1203, 1289
BseSI GKGCMC 2 cut(s) 895, 1296
BseXI GCAGC 4 cut(s) 690, 1021, 1311, 1438
BsgI GTGCAG 1 cut(s) 1020
Bsh1285I CGRYCG 1 cut(s) 1245
BshFI GGCC 4 cut(s) 223, 859, 893, 1085
BshNI GGYRCC 1 cut(s) 1201
BsiEI CGRYCG 1 cut(s) 1245
BsiSI CCGG 1 cut(s) 889
BslFI GGGAC 1 cut(s) 579
BslI CCNNNNNNNGG 1 cut(s) 509
BsmAI GTCTC 3 cut(s) 541, 1036, 1397
BsmBI CGTCTC 2 cut(s) 541, 1036
BsmFI GGGAC 1 cut(s) 579
BsmI GAATGC 1 cut(s) 193
BsnI GGCC 4 cut(s) 223, 859, 893, 1085
Bsp119I TTCGAA 1 cut(s) 1118
Bsp120I GGGCCC 1 cut(s) 891
Bsp1286I GDGCHC 2 cut(s) 895, 1296
Bsp1407I TGTACA 3 cut(s) 133, 278, 1340
Bsp143I GATC 4 cut(s) 88, 664, 731, 833
BspACI CCGC 2 cut(s) 706, 860
BspANI GGCC 4 cut(s) 223, 859, 893, 1085
BspCNI CTCAG 3 cut(s) 97, 496, 1072
BspHI TCATGA 1 cut(s) 169
BspLI GGNNCC 3 cut(s) 90, 893, 1203
BspMAI CTGCAG 1 cut(s) 1301
BspPI GGATC 3 cut(s) 83, 96, 841
BspQI GCTCTTC 1 cut(s) 313
BspT104I TTCGAA 1 cut(s) 1118
BspT107I GGYRCC 1 cut(s) 1201
BspTI CTTAAG 1 cut(s) 239
BsrDI GCAATG 1 cut(s) 1409
BsrGI TGTACA 3 cut(s) 133, 278, 1340
BsrI ACTGG 4 cut(s) 925, 970, 1203, 1289
BssECI CCNNGG 5 cut(s) 489, 542, 698, 1029, 1086
BssMI GATC 4 cut(s) 88, 664, 731, 833
BssT1I CCWWGG 2 cut(s) 542, 698
Bst2UI CCWGG 2 cut(s) 371, 490
Bst4CI ACNGT 4 cut(s) 283, 689, 1213, 1243
Bst6I CTCTTC 3 cut(s) 313, 1124, 1148
BstAFI CTTAAG 1 cut(s) 239
BstAUI TGTACA 3 cut(s) 133, 278, 1340
BstBAI YACGTR 2 cut(s) 884, 1316
BstBI TTCGAA 1 cut(s) 1118
BstDEI CTNAG 6 cut(s) 105, 504, 627, 839, 1080, 1368
BstF5I GGATG 7 cut(s) 44, 136, 379, 514, 565, 664, 1165
BstKTI GATC 4 cut(s) 91, 667, 734, 836
BstMAI GTCTC 3 cut(s) 541, 1036, 1397
BstMBI GATC 4 cut(s) 88, 664, 731, 833
BstMCI CGRYCG 1 cut(s) 1245
BstMWI GCNNNNNNNGC 4 cut(s) 15, 153, 1034, 1076
BstNI CCWGG 2 cut(s) 371, 490
BstSCI CCNGG 3 cut(s) 369, 488, 888
BstSFI CTRYAG 2 cut(s) 1297, 1402
BstSLI GKGCMC 2 cut(s) 895, 1296
BstV1I GCAGC 4 cut(s) 690, 1021, 1311, 1438
BstV2I GAAGAC 2 cut(s) 334, 824
BstX2I RGATCY 2 cut(s) 88, 833
BstYI RGATCY 2 cut(s) 88, 833
Bsu36I CCTNAGG 1 cut(s) 504
BsuRI GGCC 4 cut(s) 223, 859, 893, 1085
BtrI CACGTC 1 cut(s) 551
BtsCI GGATG 7 cut(s) 44, 136, 379, 514, 565, 664, 1165
BtsI GCAGTG 2 cut(s) 1192, 1396
BtsIMutI CAGTG 6 cut(s) 821, 1192, 1196, 1209, 1296, 1396
CciI TCATGA 1 cut(s) 169
Cfr13I GGNCC 5 cut(s) 857, 891, 892, 1229, 1331
CseI GACGC 1 cut(s) 1432
Csp6I GTAC 3 cut(s) 134, 279, 1341
CviAII CATG 4 cut(s) 170, 327, 668, 713
CviQI GTAC 3 cut(s) 134, 279, 1341
DdeI CTNAG 6 cut(s) 105, 504, 627, 839, 1080, 1368
DpnI GATC 4 cut(s) 90, 666, 733, 835
DpnII GATC 4 cut(s) 88, 664, 731, 833
Eam1104I CTCTTC 3 cut(s) 313, 1124, 1148
EarI CTCTTC 3 cut(s) 313, 1124, 1148
Eco130I CCWWGG 2 cut(s) 542, 698
Eco24I GRGCYC 1 cut(s) 895
Eco32I GATATC 1 cut(s) 913
Eco47I GGWCC 2 cut(s) 1229, 1331
Eco57I CTGAAG 3 cut(s) 881, 1023, 1166
Eco72I CACGTG 1 cut(s) 1316
Eco81I CCTNAGG 1 cut(s) 504
EcoO109I RGGNCCY 1 cut(s) 892
EcoRII CCWGG 2 cut(s) 369, 488
EcoRV GATATC 1 cut(s) 913
EcoT14I CCWWGG 2 cut(s) 542, 698
EcoT22I ATGCAT 2 cut(s) 44, 1351
EcoT38I GRGCYC 1 cut(s) 895
ErhI CCWWGG 2 cut(s) 542, 698
Esp3I CGTCTC 2 cut(s) 541, 1036
FaeI CATG 4 cut(s) 173, 330, 671, 716
FalI AAGNNNNNCTT 2 cut(s) 141, 173
FaqI GGGAC 1 cut(s) 579
FatI CATG 4 cut(s) 169, 326, 667, 712
Fnu4HI GCNGC 5 cut(s) 704, 860, 1035, 1300, 1427
FokI GGATG 7 cut(s) 51, 123, 386, 521, 572, 671, 1172
FriOI GRGCYC 1 cut(s) 895
Fsp4HI GCNGC 5 cut(s) 704, 860, 1035, 1300, 1427
FspBI CTAG 2 cut(s) 543, 1071
GluI GCNGC 5 cut(s) 704, 860, 1035, 1300, 1427
GsuI CTGGAG 2 cut(s) 54, 472
HaeIII GGCC 4 cut(s) 223, 859, 893, 1085
HapII CCGG 1 cut(s) 889
HgaI GACGC 1 cut(s) 1432
Hin1II CATG 4 cut(s) 173, 330, 671, 716
HincII GTYRAC 2 cut(s) 943, 975
HindII GTYRAC 2 cut(s) 943, 975
HindIII AAGCTT 3 cut(s) 7, 236, 242
HinfI GANTC 7 cut(s) 166, 287, 446, 538, 603, 1115, 1364
HpaI GTTAAC 1 cut(s) 943
HpaII CCGG 1 cut(s) 889
HphI GGTGA 3 cut(s) 524, 605, 686
Hpy166II GTNNAC 6 cut(s) 279, 515, 845, 870, 943, 975
Hpy188III TCNNGA 7 cut(s) 21, 170, 503, 729, 851, 1112, 1361
Hpy8I GTNNAC 6 cut(s) 279, 515, 845, 870, 943, 975
HpyAV CCTTC 5 cut(s) 342, 394, 848, 905, 982
HpyCH4III ACNGT 4 cut(s) 283, 689, 1213, 1243
HpyCH4IV ACGT 4 cut(s) 550, 883, 1045, 1315
HpyCH4V TGCA 8 cut(s) 42, 193, 950, 1037, 1299, 1349, 1389, 1414
HpyF10VI GCNNNNNNNGC 4 cut(s) 15, 153, 1034, 1076
HpyF3I CTNAG 6 cut(s) 105, 504, 627, 839, 1080, 1368
HpySE526I ACGT 4 cut(s) 550, 883, 1045, 1315
Hsp92II CATG 4 cut(s) 173, 330, 671, 716
KspAI GTTAAC 1 cut(s) 943
Kzo9I GATC 4 cut(s) 88, 664, 731, 833
LguI GCTCTTC 1 cut(s) 313
LmnI GCTCC 1 cut(s) 1383
Lsp1109I GCAGC 4 cut(s) 690, 1021, 1311, 1438
LweI GCATC 1 cut(s) 29
MaeI CTAG 2 cut(s) 543, 1071
MaeII ACGT 4 cut(s) 550, 883, 1045, 1315
MaeIII GTNAC 5 cut(s) 253, 884, 1167, 1192, 1246
MalI GATC 4 cut(s) 90, 666, 733, 835
MboI GATC 4 cut(s) 88, 664, 731, 833
MflI RGATCY 2 cut(s) 88, 833
MhlI GDGCHC 2 cut(s) 895, 1296
MluCI AATT 8 cut(s) 129, 230, 441, 597, 692, 1163, 1336, 1434
MlyI GAGTC 1 cut(s) 440
Mph1103I ATGCAT 2 cut(s) 44, 1351
MroXI GAANNNNTTC 2 cut(s) 498, 1280
MseI TTAA 5 cut(s) 233, 240, 420, 917, 942
MslI CAYNNNNRTG 2 cut(s) 198, 672
MspCI CTTAAG 1 cut(s) 239
MspI CCGG 1 cut(s) 889
MspR9I CCNGG 3 cut(s) 371, 490, 890
Mva1269I GAATGC 1 cut(s) 193
MvaI CCWGG 2 cut(s) 371, 490
MwoI GCNNNNNNNGC 4 cut(s) 15, 153, 1034, 1076
NciI CCSGG 1 cut(s) 890
NdeII GATC 4 cut(s) 88, 664, 731, 833
NlaIII CATG 4 cut(s) 173, 330, 671, 716
NlaIV GGNNCC 3 cut(s) 90, 893, 1203
NmeAIII GCCGAG 2 cut(s) 1054, 1111
NmuCI GTSAC 2 cut(s) 1167, 1192
NsiI ATGCAT 2 cut(s) 44, 1351
NspV TTCGAA 1 cut(s) 1118
PagI TCATGA 1 cut(s) 169
PciSI GCTCTTC 1 cut(s) 313
PctI GAATGC 1 cut(s) 193
PdmI GAANNNNTTC 2 cut(s) 498, 1280
PfeI GAWTC 6 cut(s) 166, 287, 538, 603, 1115, 1364
PfoI TCCNGGA 1 cut(s) 369
PkrI GCNGC 5 cut(s) 705, 861, 1036, 1301, 1428
PleI GAGTC 1 cut(s) 440
PmaCI CACGTG 1 cut(s) 1316
PmlI CACGTG 1 cut(s) 1316
PpsI GAGTC 1 cut(s) 440
Ppu21I YACGTR 2 cut(s) 884, 1316
Psp6I CCWGG 2 cut(s) 369, 488
PspCI CACGTG 1 cut(s) 1316
PspGI CCWGG 2 cut(s) 369, 488
PspN4I GGNNCC 3 cut(s) 90, 893, 1203
PspOMI GGGCCC 1 cut(s) 891
PspPI GGNCC 5 cut(s) 857, 891, 892, 1229, 1331
PsrI GAACNNNNNNTAC 2 cut(s) 1231, 1263
PstI CTGCAG 1 cut(s) 1301
PsuI RGATCY 2 cut(s) 88, 833
RsaI GTAC 3 cut(s) 135, 280, 1342
RsaNI GTAC 3 cut(s) 134, 279, 1341
RseI CAYNNNNRTG 2 cut(s) 198, 672
SapI GCTCTTC 1 cut(s) 313
SaqAI TTAA 5 cut(s) 233, 240, 420, 917, 942
SatI GCNGC 5 cut(s) 704, 860, 1035, 1300, 1427
Sau3AI GATC 4 cut(s) 88, 664, 731, 833
Sau96I GGNCC 5 cut(s) 857, 891, 892, 1229, 1331
SchI GAGTC 1 cut(s) 440
ScrFI CCNGG 3 cut(s) 371, 490, 890
SduI GDGCHC 2 cut(s) 895, 1296
SfaNI GCATC 1 cut(s) 29
SfcI CTRYAG 2 cut(s) 1297, 1402
SfuI TTCGAA 1 cut(s) 1118
SinI GGWCC 2 cut(s) 1229, 1331
SmiMI CAYNNNNRTG 2 cut(s) 198, 672
SmlI CTYRAG 1 cut(s) 239
SmoI CTYRAG 1 cut(s) 239
Sse9I AATT 8 cut(s) 129, 230, 441, 597, 692, 1163, 1336, 1434
SsiI CCGC 2 cut(s) 706, 860
SspMI CTAG 2 cut(s) 543, 1071
StyD4I CCNGG 3 cut(s) 369, 488, 888
StyI CCWWGG 2 cut(s) 542, 698
TaaI ACNGT 4 cut(s) 283, 689, 1213, 1243
TaiI ACGT 4 cut(s) 553, 886, 1048, 1318
TaqI TCGA 3 cut(s) 247, 601, 1118
TasI AATT 8 cut(s) 129, 230, 441, 597, 692, 1163, 1336, 1434
TatI WGTACW 3 cut(s) 133, 278, 1340
TauI GCSGC 1 cut(s) 862
TfiI GAWTC 6 cut(s) 166, 287, 538, 603, 1115, 1364
Tru1I TTAA 5 cut(s) 233, 240, 420, 917, 942
Tru9I TTAA 5 cut(s) 233, 240, 420, 917, 942
TscAI CASTG 6 cut(s) 828, 1192, 1203, 1216, 1296, 1403
TseFI GTSAC 2 cut(s) 1167, 1192
TseI GCWGC 4 cut(s) 703, 1034, 1299, 1426
Tsp45I GTSAC 2 cut(s) 1167, 1192
TspDTI ATGAA 4 cut(s) 334, 600, 813, 1176
TspGWI ACGGA 3 cut(s) 201, 439, 1431
TspRI CASTG 6 cut(s) 828, 1192, 1203, 1216, 1296, 1403
Vha464I CTTAAG 1 cut(s) 239
VpaK11BI GGWCC 2 cut(s) 1229, 1331
XapI RAATTY 1 cut(s) 597
XmaJI CCTAGG 1 cut(s) 542
XmnI GAANNNNTTC 2 cut(s) 498, 1280
XspI CTAG 2 cut(s) 543, 1071
Zsp2I ATGCAT 2 cut(s) 44, 1351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.