Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006793

Physical Location & Seq

Genomic Coordinates Forward (+)

2192685 .. 2194321

Gene Structure 1637 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G06950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGAGTTGCGTTACACCAGCACTTCCTCCTTCACTCTTTACTAATGGGTATCTTTCGTCTCCTCAGAATATCTCCATGACCAACTTGAACAGTTCGGTAAAGGTTAGTGATTCTGGTGCTTATAAATGGCGCCTTGTGATAGCCTACGATGGCACCCGTTTTGCAGGTTGGCAGTATCAGGAGTCACCACCAACTATCCAATCAATGTTAGAAAAAGCCTTAATTCAGATTACAGAGCTCGGTAGAAAAGAGCTTCAGCTTATTGGAGCTGGCAGGACCGATGCAGGAGTTCACGCTTGGGGTCAGGTAGCTCATTTTGTCACTCCTTTCAACTATACTAGTTTGGATAGCTTTCACGCTGCTTTGAACGGTCTTCTTCCTAAAGATATCCGTGTCAGAGAGCTGAGTGCAGCGGTTCCTGAGTTTCATGCTCGGTTTTCTGCCTCTAGCAAGGTTTATCGCTACCAGATATACAACGACACTTTCATGGACCCGTTCCAGCGTCATTGGGCTTACCACTGTGCTTATAAACTGAATGCTTCTAAAATGCGGGAAGCTGCAAATCTTTTTGTTGGAAAGCATGATTTCTCTGCATTTGCTAACGCTACTCGGGAAGATGGAGTACCTGATCCTTTGAAAACTATATCTCGCTTCGATGTCATTCAAATGGGATCTCTTCTACAGCTTGAAGTTGAAGGTTCTGGCTTTTTGTACAGACAAGTCAGAAACATGGTAGCTTTGCTGATTCAGATTGGAAAAGAAGCACTGGATTCAGACATTGTCCCAATGATTCTCGAAACCAAAGACAGGAGGGTGCTTGCAAAGTATACTAGTTTGCCTGCGTCGCCTCATGGTCTTTGTCTTGTGTCTGTTAAGTATAAGGAAGATCATCTAAAGCTTCCATTGGATTGTCCTGTTACTAGTTCTGGTAGACATCACACTATAACAAAATGTAAACTTCCCTTCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PseudoU_synth_1

Protein Analysis

323

Amino Acids

36.21

Weight (kDa)

8.95

Isoelectric Point (pI)

36.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PseudoU_synth_1	PF01416	47 - 146	9.5e-09	tRNA pseudouridine synthase
PseudoU_synth_1	PF01416	186 - 293	5e-23	tRNA pseudouridine synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006793)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06950
fragaria_vesca	FvH4_4g21570 FvH4_4g21570 FvH4_4g21570
malus_domestica	MD13G1140300.v1.1 MD16G1135500.v1.1
prunus_persica	Prupe.1G104700_v2.0.a1 Prupe.1G104700_v2.0.a1 Prupe.1G104700_v2.0.a1 Prupe.1G104700_v2.0.a1
pyrus_communis	pycom13g12200 pycom16g11950
rosa_chinensis	RchiOBHm_Chr4g0427681
rosa_laevigata	RLG00000007217
rosa_multiflora	Rmu_sc0003399.1_g000003 Rmu_sc0016038.1_g000001
rosa_roxburghii	Rroxscaffold_5G00369310
rosa_rugosa	Rorug04G0219100 Rorug04G0219200 Rorug04G0219300 Rorug04G0219400
rosa_samantha	Rh4AG275600 Rh4BG281600 Rh4CG297100 Rh4DG279000
rosa_wichuraiana	Rw4G023920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	123, 528
Acc36I	ACCTGC	1 cut(s)	155
AccB1I	GGYRCC	2 cut(s)	129, 152
AccI	GTMKAC	2 cut(s)	827, 931
AciI	CCGC	2 cut(s)	413, 550
AclWI	GGATC	2 cut(s)	623, 679
AcuI	CTGAAG	1 cut(s)	239
AcyI	GRCGYC	1 cut(s)	130
AfaI	GTAC	2 cut(s)	624, 713
AfiI	CCNNNNNNNGG	1 cut(s)	807
AgsI	TTSAA	7 cut(s)	88, 331, 367, 637, 665, 689, 695
AhlI	ACTAGT	3 cut(s)	338, 830, 920
Alw21I	GWGCWC	1 cut(s)	240
Alw26I	GTCTC	1 cut(s)	63
AlwI	GGATC	2 cut(s)	623, 679
Ama87I	CYCGRG	1 cut(s)	609
ApeKI	GCWGC	3 cut(s)	359, 410, 557
AspLEI	GCGC	1 cut(s)	132
AspS9I	GGNCC	2 cut(s)	276, 490
AsuHPI	GGTGA	1 cut(s)	177
AvaI	CYCGRG	1 cut(s)	609
AvaII	GGWCC	2 cut(s)	276, 490
BanI	GGYRCC	2 cut(s)	129, 152
BanII	GRGCYC	1 cut(s)	240
BarI	GAAGNNNNNNTAC	2 cut(s)	606, 638
BbsI	GAAGAC	1 cut(s)	365
Bbv12I	GWGCWC	1 cut(s)	240
BbvI	GCAGC	3 cut(s)	346, 422, 544
BccI	CCATC	2 cut(s)	143, 611
BcoDI	GTCTC	1 cut(s)	63
BcuI	ACTAGT	3 cut(s)	338, 830, 920
BfaI	CTAG	4 cut(s)	339, 447, 831, 921
BfmI	CTRYAG	1 cut(s)	680
BfoI	RGCGCY	1 cut(s)	133
BfuAI	ACCTGC	1 cut(s)	155
BisI	GCNGC	3 cut(s)	360, 411, 558
BlsI	GCNGC	3 cut(s)	361, 412, 559
Bme18I	GGWCC	2 cut(s)	276, 490
BmeT110I	CYCGRG	1 cut(s)	609
BmgT120I	GGNCC	2 cut(s)	276, 490
BmiI	GGNNCC	4 cut(s)	131, 154, 417, 492
BmsI	GCATC	1 cut(s)	271
BpiI	GAAGAC	1 cut(s)	365
BsaHI	GRCGYC	1 cut(s)	130
Bsc4I	CCNNNNNNNGG	1 cut(s)	807
Bse1I	ACTGG	1 cut(s)	771
BseLI	CCNNNNNNNGG	1 cut(s)	807
BseMII	CTCAG	3 cut(s)	77, 395, 411
BseNI	ACTGG	1 cut(s)	771
BseRI	GAGGAG	1 cut(s)	51
BseXI	GCAGC	3 cut(s)	346, 422, 544
BsgI	GTGCAG	1 cut(s)	429
BshNI	GGYRCC	2 cut(s)	129, 152
BsiHKAI	GWGCWC	1 cut(s)	240
BsiHKCI	CYCGRG	1 cut(s)	609
BslFI	GGGAC	1 cut(s)	767
BslI	CCNNNNNNNGG	1 cut(s)	807
BsmAI	GTCTC	1 cut(s)	63
BsmBI	CGTCTC	1 cut(s)	63
BsmFI	GGGAC	1 cut(s)	767
BsmI	GAATGC	1 cut(s)	541
BsoBI	CYCGRG	1 cut(s)	609
Bsp1286I	GDGCHC	1 cut(s)	240
Bsp1407I	TGTACA	1 cut(s)	711
Bsp143I	GATC	3 cut(s)	628, 671, 886
BspACI	CCGC	2 cut(s)	413, 550
BspCNI	CTCAG	3 cut(s)	76, 396, 412
BspLI	GGNNCC	4 cut(s)	131, 154, 417, 492
BspMI	ACCTGC	1 cut(s)	155
BspPI	GGATC	2 cut(s)	623, 679
BspT107I	GGYRCC	2 cut(s)	129, 152
BsrGI	TGTACA	1 cut(s)	711
BsrI	ACTGG	1 cut(s)	771
BssMI	GATC	3 cut(s)	628, 671, 886
BssNAI	GTATAC	1 cut(s)	828
BssNI	GRCGYC	1 cut(s)	130
Bst1107I	GTATAC	1 cut(s)	828
Bst4CI	ACNGT	3 cut(s)	92, 371, 521
Bst6I	CTCTTC	1 cut(s)	681
BstACI	GRCGYC	1 cut(s)	130
BstAUI	TGTACA	1 cut(s)	711
BstC8I	GCNNGC	3 cut(s)	271, 819, 840
BstDEI	CTNAG	3 cut(s)	63, 404, 420
BstH2I	RGCGCY	1 cut(s)	133
BstHHI	GCGC	1 cut(s)	132
BstKTI	GATC	3 cut(s)	631, 674, 889
BstMAI	GTCTC	1 cut(s)	63
BstMBI	GATC	3 cut(s)	628, 671, 886
BstMWI	GCNNNNNNNGC	1 cut(s)	844
BstSFI	CTRYAG	1 cut(s)	680
BstV1I	GCAGC	3 cut(s)	346, 422, 544
BstV2I	GAAGAC	1 cut(s)	365
BstX2I	RGATCY	1 cut(s)	671
BstYI	RGATCY	1 cut(s)	671
BstZ17I	GTATAC	1 cut(s)	828
BtsIMutI	CAGTG	2 cut(s)	517, 764
BveI	ACCTGC	1 cut(s)	155
Cac8I	GCNNGC	3 cut(s)	271, 819, 840
CfoI	GCGC	1 cut(s)	132
Cfr13I	GGNCC	2 cut(s)	276, 490
CseI	GACGC	2 cut(s)	491, 831
Csp6I	GTAC	2 cut(s)	623, 712
CviAII	CATG	6 cut(s)	76, 428, 487, 581, 730, 851
CviQI	GTAC	2 cut(s)	623, 712
DdeI	CTNAG	3 cut(s)	63, 404, 420
DinI	GGCGCC	1 cut(s)	131
DpnI	GATC	3 cut(s)	630, 673, 888
DpnII	GATC	3 cut(s)	628, 671, 886
Eam1104I	CTCTTC	1 cut(s)	681
EarI	CTCTTC	1 cut(s)	681
Ecl136II	GAGCTC	1 cut(s)	238
Eco24I	GRGCYC	1 cut(s)	240
Eco32I	GATATC	1 cut(s)	388
Eco47I	GGWCC	2 cut(s)	276, 490
Eco53kI	GAGCTC	1 cut(s)	238
Eco57I	CTGAAG	1 cut(s)	239
Eco88I	CYCGRG	1 cut(s)	609
EcoICRI	GAGCTC	1 cut(s)	238
EcoRV	GATATC	1 cut(s)	388
EcoT38I	GRGCYC	1 cut(s)	240
EgeI	GGCGCC	1 cut(s)	131
EheI	GGCGCC	1 cut(s)	131
Esp3I	CGTCTC	1 cut(s)	63
FaeI	CATG	6 cut(s)	79, 431, 490, 584, 733, 854
FaqI	GGGAC	1 cut(s)	767
FatI	CATG	6 cut(s)	75, 427, 486, 580, 729, 850
FauI	CCCGC	1 cut(s)	543
FblI	GTMKAC	2 cut(s)	827, 931
Fnu4HI	GCNGC	3 cut(s)	360, 411, 558
FriOI	GRGCYC	1 cut(s)	240
Fsp4HI	GCNGC	3 cut(s)	360, 411, 558
FspBI	CTAG	4 cut(s)	339, 447, 831, 921
GlaI	GCGC	1 cut(s)	131
GluI	GCNGC	3 cut(s)	360, 411, 558
HaeII	RGCGCY	1 cut(s)	133
HgaI	GACGC	2 cut(s)	491, 831
HhaI	GCGC	1 cut(s)	132
Hin1I	GRCGYC	1 cut(s)	130
Hin1II	CATG	6 cut(s)	79, 431, 490, 584, 733, 854
Hin6I	GCGC	1 cut(s)	130
HinP1I	GCGC	1 cut(s)	130
HindIII	AAGCTT	1 cut(s)	896
HinfI	GANTC	5 cut(s)	110, 182, 745, 770, 790
HphI	GGTGA	1 cut(s)	177
Hpy166II	GTNNAC	4 cut(s)	292, 828, 932, 956
Hpy188I	TCNGA	6 cut(s)	66, 228, 398, 725, 750, 775
Hpy188III	TCNNGA	4 cut(s)	179, 419, 611, 794
Hpy8I	GTNNAC	4 cut(s)	292, 828, 932, 956
Hpy99I	CGWCG	1 cut(s)	847
HpyAV	CCTTC	2 cut(s)	39, 689
HpyCH4III	ACNGT	3 cut(s)	92, 371, 521
HpyCH4V	TGCA	6 cut(s)	164, 284, 410, 560, 593, 821
HpyF10VI	GCNNNNNNNGC	1 cut(s)	844
HpyF3I	CTNAG	3 cut(s)	63, 404, 420
Hsp92I	GRCGYC	1 cut(s)	130
Hsp92II	CATG	6 cut(s)	79, 431, 490, 584, 733, 854
HspAI	GCGC	1 cut(s)	130
KasI	GGCGCC	1 cut(s)	129
Kzo9I	GATC	3 cut(s)	628, 671, 886
LmnI	GCTCC	1 cut(s)	266
Lsp1109I	GCAGC	3 cut(s)	346, 422, 544
LweI	GCATC	1 cut(s)	271
MaeI	CTAG	4 cut(s)	339, 447, 831, 921
MaeIII	GTNAC	4 cut(s)	10, 183, 319, 916
MalI	GATC	3 cut(s)	630, 673, 888
MboI	GATC	3 cut(s)	628, 671, 886
MboII	GAAGA	5 cut(s)	365, 368, 626, 668, 896
MflI	RGATCY	1 cut(s)	671
MhlI	GDGCHC	1 cut(s)	240
MluCI	AATT	1 cut(s)	222
Mly113I	GGCGCC	1 cut(s)	130
MlyI	GAGTC	1 cut(s)	191
MmeI	TCCRAC	1 cut(s)	553
MnlI	CCTC	5 cut(s)	36, 72, 454, 804, 858
MseI	TTAA	2 cut(s)	221, 873
MslI	CAYNNNNRTG	2 cut(s)	485, 665
MspA1I	CMGCKG	1 cut(s)	413
Mva1269I	GAATGC	1 cut(s)	541
MwoI	GCNNNNNNNGC	1 cut(s)	844
NarI	GGCGCC	1 cut(s)	130
NdeII	GATC	3 cut(s)	628, 671, 886
NlaIII	CATG	6 cut(s)	79, 431, 490, 584, 733, 854
NlaIV	GGNNCC	4 cut(s)	131, 154, 417, 492
NmuCI	GTSAC	2 cut(s)	183, 319
PctI	GAATGC	1 cut(s)	541
PfeI	GAWTC	4 cut(s)	110, 745, 770, 790
PflFI	GACNNNGTC	1 cut(s)	779
PkrI	GCNGC	3 cut(s)	361, 412, 559
PleI	GAGTC	1 cut(s)	190
PluTI	GGCGCC	1 cut(s)	133
PpsI	GAGTC	1 cut(s)	190
PsiI	TTATAA	2 cut(s)	123, 528
Psp124BI	GAGCTC	1 cut(s)	240
PspN4I	GGNNCC	4 cut(s)	131, 154, 417, 492
PspPI	GGNCC	2 cut(s)	276, 490
PsuI	RGATCY	1 cut(s)	671
PsyI	GACNNNGTC	1 cut(s)	779
RsaI	GTAC	2 cut(s)	624, 713
RsaNI	GTAC	2 cut(s)	623, 712
RseI	CAYNNNNRTG	2 cut(s)	485, 665
SacI	GAGCTC	1 cut(s)	240
SaqAI	TTAA	2 cut(s)	221, 873
SatI	GCNGC	3 cut(s)	360, 411, 558
Sau3AI	GATC	3 cut(s)	628, 671, 886
Sau96I	GGNCC	2 cut(s)	276, 490
SchI	GAGTC	1 cut(s)	191
SduI	GDGCHC	1 cut(s)	240
SfaNI	GCATC	1 cut(s)	271
SfcI	CTRYAG	1 cut(s)	680
SfoI	GGCGCC	1 cut(s)	131
SinI	GGWCC	2 cut(s)	276, 490
SmiMI	CAYNNNNRTG	2 cut(s)	485, 665
SpeI	ACTAGT	3 cut(s)	338, 830, 920
Sse9I	AATT	1 cut(s)	222
SsiI	CCGC	2 cut(s)	413, 550
SspDI	GGCGCC	1 cut(s)	129
SspMI	CTAG	4 cut(s)	339, 447, 831, 921
SstI	GAGCTC	1 cut(s)	240
TaaI	ACNGT	3 cut(s)	92, 371, 521
TaqI	TCGA	2 cut(s)	654, 795
TaqII	GACCGA	1 cut(s)	293
TasI	AATT	1 cut(s)	222
TatI	WGTACW	1 cut(s)	711
TfiI	GAWTC	4 cut(s)	110, 745, 770, 790
Tru1I	TTAA	2 cut(s)	221, 873
Tru9I	TTAA	2 cut(s)	221, 873
TscAI	CASTG	2 cut(s)	524, 771
TseFI	GTSAC	2 cut(s)	183, 319
TseI	GCWGC	3 cut(s)	359, 410, 557
Tsp45I	GTSAC	2 cut(s)	183, 319
TspDTI	ATGAA	2 cut(s)	416, 475
TspGWI	ACGGA	1 cut(s)	380
TspRI	CASTG	2 cut(s)	524, 771
Tth111I	GACNNNGTC	1 cut(s)	779
VpaK11BI	GGWCC	2 cut(s)	276, 490
XmiI	GTMKAC	2 cut(s)	827, 931
XspI	CTAG	4 cut(s)	339, 447, 831, 921

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.