Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0006793

Physical Location & Seq

Genomic Coordinates Reverse (-)

8428530 .. 8431254

Gene Structure 2725 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G104700.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGTGTAGCAATGTAGTTGTAGGCCTTCCTTCCCCTCCAAATCTTAACGGGACTCTTTCTTCTCCAACTCCCACTAATACTTCGAACGCAAAGGATGGAGACAACTTGGTAATGAACCACACTGGGGTTGGTGGTGGGTATAAGTGGCGTTTGGTTATTGCTTATGACGGCACCCGCTATGCAGCAGGATGGCAATACCAGAGTTCACCTCCTACAATACAGTGCTTTGTGGAGAAAGTTCTAATGCAAGCAACAAAGCTGGAAAGGAAGGATCTTAGTTTGGTTGGTGCAAGTAGGACAGATAAGGGAGTACATGCTTGGGGTCAGGTTGCACACTTTGTCACACCTTTCAACTACGACAGCATAGATAGCATTCATGCAGCTCTCAACGGTCTTCTTCCTTCTGATATTCGAGTGAGGGAGATCAGCCCTGCAGTGCCTGAGTTCCATGCTCGTTTTTCAGCAAAAAGCAAAATTTATCATTACAAAGTATATAATGACACATTCATGGACCCATTTCAGCGTGACTATGCTTACCATAGTGCACATAAGCTAAACCCCGCGGTTATGAGAGAAGCTGCAAAGTATTTTATTGGAAAGCATGATTTCTCTGCTTTTGCCAATGCCTCCCAGAAAGAACGAGTGCGAGATCCAGTAAAGAATATATTCCGTTTTGATGTCATTGAAATGGGGGCTCTTTTACAACTAGAAGTTGAAGGGTCGGGCTTCTTATATCGACAAGTCCGGAACATGGTCTCTCTGCTGCTTCAAATTGGGAGGGAAGCACTGCCTCCTTATGTTGTTCCCATGATATTGGCAACACGAGATCGCAGGGAACTTGCTAAATATGCCATGTTTGCTCCACCTCATGGGCTAAGTCTTGCGACAGTCAAGTATAACGAGGAGCATCTAAGGCTTCCATCTGGTTGCTCCACGACCAGTTTTGGCAGGCATTATACCATAGGATCATGTAAGCTTCCATTCTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PseudoU_synth_1

Protein Analysis

330

Amino Acids

36.84

Weight (kDa)

9.27

Isoelectric Point (pI)

43.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006793)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06950
fragaria_vesca	FvH4_4g21570 FvH4_4g21570 FvH4_4g21570
malus_domestica	MD13G1140300.v1.1 MD16G1135500.v1.1
prunus_persica	Prupe.1G104700_v2.0.a1 Prupe.1G104700_v2.0.a1 Prupe.1G104700_v2.0.a1 Prupe.1G104700_v2.0.a1
pyrus_communis	pycom13g12200 pycom16g11950
rosa_chinensis	RchiOBHm_Chr4g0427681
rosa_laevigata	RLG00000007217
rosa_multiflora	Rmu_sc0003399.1_g000003 Rmu_sc0016038.1_g000001
rosa_roxburghii	Rroxscaffold_5G00369310
rosa_rugosa	Rorug04G0219100 Rorug04G0219200 Rorug04G0219300 Rorug04G0219400
rosa_samantha	Rh4AG275600 Rh4BG281600 Rh4CG297100 Rh4DG279000
rosa_wichuraiana	Rw4G023920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	170
AccB7I	CCANNNNNTGG	1 cut(s)	869
AccII	CGCG	1 cut(s)	563
AccIII	TCCGGA	1 cut(s)	744
AciI	CCGC	3 cut(s)	175, 561, 563
AclWI	GGATC	3 cut(s)	279, 644, 973
AcsI	RAATTY	1 cut(s)	474
AfaI	GTAC	1 cut(s)	312
AfiI	CCNNNNNNNGG	3 cut(s)	124, 751, 869
AgsI	TTSAA	4 cut(s)	352, 686, 716, 770
AluBI	AGCT	5 cut(s)	259, 383, 553, 578, 976
AluI	AGCT	5 cut(s)	259, 383, 553, 578, 976
Alw21I	GWGCWC	1 cut(s)	547
Alw26I	GTCTC	2 cut(s)	93, 760
Alw44I	GTGCAC	1 cut(s)	543
AlwI	GGATC	3 cut(s)	279, 644, 973
AlwNI	CAGNNNCTG	1 cut(s)	440
Aor13HI	TCCGGA	1 cut(s)	744
AoxI	GGCC	1 cut(s)	22
ApaLI	GTGCAC	1 cut(s)	543
ApeKI	GCWGC	4 cut(s)	182, 380, 578, 763
ApoI	RAATTY	1 cut(s)	474
Asp700I	GAANNNNTTC	1 cut(s)	665
AspS9I	GGNCC	1 cut(s)	511
AsuHPI	GGTGA	1 cut(s)	198
AsuII	TTCGAA	1 cut(s)	83
AvaII	GGWCC	1 cut(s)	511
BaeGI	GKGCMC	1 cut(s)	547
BanI	GGYRCC	1 cut(s)	170
BanII	GRGCYC	1 cut(s)	697
BauI	CACGAG	1 cut(s)	822
BbsI	GAAGAC	1 cut(s)	386
Bbv12I	GWGCWC	1 cut(s)	547
BbvI	GCAGC	4 cut(s)	194, 392, 565, 750
BccI	CCATC	3 cut(s)	89, 183, 928
BceAI	ACGGC	1 cut(s)	184
BcoDI	GTCTC	2 cut(s)	93, 760
BfaI	CTAG	1 cut(s)	707
BfmI	CTRYAG	1 cut(s)	432
BisI	GCNGC	4 cut(s)	183, 381, 579, 764
BlsI	GCNGC	4 cut(s)	184, 382, 580, 765
Bme18I	GGWCC	1 cut(s)	511
BmgT120I	GGNCC	1 cut(s)	511
BmiI	GGNNCC	2 cut(s)	172, 513
BmrI	ACTGGG	1 cut(s)	132
BmsI	GCATC	1 cut(s)	916
BmuI	ACTGGG	1 cut(s)	132
BpiI	GAAGAC	1 cut(s)	386
BplI	GAGNNNNNCTC	2 cut(s)	193, 225
Bpu14I	TTCGAA	1 cut(s)	83
BsaI	GGTCTC	1 cut(s)	760
BsaJI	CCNNGG	1 cut(s)	561
BsaWI	WCCGGW	1 cut(s)	744
Bsc4I	CCNNNNNNNGG	3 cut(s)	124, 751, 869
Bse1I	ACTGG	3 cut(s)	127, 653, 939
Bse3DI	GCAATG	1 cut(s)	16
BseAI	TCCGGA	1 cut(s)	744
BseDI	CCNNGG	1 cut(s)	561
BseGI	GGATG	2 cut(s)	100, 194
BseLI	CCNNNNNNNGG	3 cut(s)	124, 751, 869
BseMI	GCAATG	1 cut(s)	16
BseMII	CTCAG	1 cut(s)	432
BseNI	ACTGG	3 cut(s)	127, 653, 939
BseRI	GAGGAG	1 cut(s)	917
BseSI	GKGCMC	1 cut(s)	547
BseXI	GCAGC	4 cut(s)	194, 392, 565, 750
Bsh1236I	CGCG	1 cut(s)	563
BshFI	GGCC	1 cut(s)	24
BshNI	GGYRCC	1 cut(s)	170
BsiHKAI	GWGCWC	1 cut(s)	547
BsiSI	CCGG	1 cut(s)	745
BslFI	GGGAC	1 cut(s)	64
BslI	CCNNNNNNNGG	3 cut(s)	124, 751, 869
BsmAI	GTCTC	2 cut(s)	93, 760
BsmFI	GGGAC	1 cut(s)	64
BsmI	GAATGC	1 cut(s)	372
BsnI	GGCC	1 cut(s)	24
Bso31I	GGTCTC	1 cut(s)	760
Bsp119I	TTCGAA	1 cut(s)	83
Bsp1286I	GDGCHC	2 cut(s)	547, 697
Bsp13I	TCCGGA	1 cut(s)	744
Bsp143I	GATC	5 cut(s)	271, 423, 649, 826, 965
BspACI	CCGC	3 cut(s)	175, 561, 563
BspANI	GGCC	1 cut(s)	24
BspCNI	CTCAG	1 cut(s)	433
BspEI	TCCGGA	1 cut(s)	744
BspFNI	CGCG	1 cut(s)	563
BspLI	GGNNCC	2 cut(s)	172, 513
BspMAI	CTGCAG	1 cut(s)	436
BspPI	GGATC	3 cut(s)	279, 644, 973
BspT104I	TTCGAA	1 cut(s)	83
BspT107I	GGYRCC	1 cut(s)	170
BspTNI	GGTCTC	1 cut(s)	760
BsrDI	GCAATG	1 cut(s)	16
BsrI	ACTGG	3 cut(s)	127, 653, 939
BssECI	CCNNGG	1 cut(s)	561
BssMI	GATC	5 cut(s)	271, 423, 649, 826, 965
BssSI	CACGAG	1 cut(s)	822
Bst2BI	CACGAG	1 cut(s)	822
Bst4CI	ACNGT	3 cut(s)	222, 392, 889
BstBI	TTCGAA	1 cut(s)	83
BstC8I	GCNNGC	2 cut(s)	249, 950
BstDEI	CTNAG	4 cut(s)	275, 441, 875, 911
BstDSI	CCRYGG	1 cut(s)	561
BstF5I	GGATG	2 cut(s)	100, 194
BstFNI	CGCG	1 cut(s)	563
BstKTI	GATC	5 cut(s)	274, 426, 652, 829, 968
BstMAI	GTCTC	2 cut(s)	93, 760
BstMBI	GATC	5 cut(s)	271, 423, 649, 826, 965
BstMWI	GCNNNNNNNGC	4 cut(s)	369, 848, 857, 913
BstNSI	RCATGY	1 cut(s)	317
BstSFI	CTRYAG	1 cut(s)	432
BstSLI	GKGCMC	1 cut(s)	547
BstUI	CGCG	1 cut(s)	563
BstV1I	GCAGC	4 cut(s)	194, 392, 565, 750
BstV2I	GAAGAC	1 cut(s)	386
BstX2I	RGATCY	2 cut(s)	271, 649
BstXI	CCANNNNNNTGG	1 cut(s)	814
BstYI	RGATCY	2 cut(s)	271, 649
BsuRI	GGCC	1 cut(s)	24
BtgI	CCRYGG	1 cut(s)	561
BtsCI	GGATG	2 cut(s)	100, 194
BtsI	GCAGTG	2 cut(s)	441, 785
BtsIMutI	CAGTG	4 cut(s)	120, 227, 441, 785
Cac8I	GCNNGC	2 cut(s)	249, 950
CaiI	CAGNNNCTG	1 cut(s)	440
Cfr13I	GGNCC	1 cut(s)	511
Cfr42I	CCGCGG	1 cut(s)	564
Csp6I	GTAC	1 cut(s)	311
CviQI	GTAC	1 cut(s)	311
DdeI	CTNAG	4 cut(s)	275, 441, 875, 911
DpnI	GATC	5 cut(s)	273, 425, 651, 828, 967
DpnII	GATC	5 cut(s)	271, 423, 649, 826, 965
Eco147I	AGGCCT	1 cut(s)	24
Eco24I	GRGCYC	1 cut(s)	697
Eco31I	GGTCTC	1 cut(s)	760
Eco47I	GGWCC	1 cut(s)	511
EcoT38I	GRGCYC	1 cut(s)	697
FaqI	GGGAC	1 cut(s)	64
FauI	CCCGC	2 cut(s)	182, 568
Fnu4HI	GCNGC	4 cut(s)	183, 381, 579, 764
FokI	GGATG	2 cut(s)	107, 201
FriOI	GRGCYC	1 cut(s)	697
Fsp4HI	GCNGC	4 cut(s)	183, 381, 579, 764
FspBI	CTAG	1 cut(s)	707
GluI	GCNGC	4 cut(s)	183, 381, 579, 764
HaeIII	GGCC	1 cut(s)	24
HapII	CCGG	1 cut(s)	745
HindIII	AAGCTT	1 cut(s)	974
HinfI	GANTC	1 cut(s)	52
HpaII	CCGG	1 cut(s)	745
HphI	GGTGA	1 cut(s)	198
Hpy166II	GTNNAC	2 cut(s)	206, 545
Hpy188I	TCNGA	1 cut(s)	406
Hpy188III	TCNNGA	1 cut(s)	745
Hpy8I	GTNNAC	2 cut(s)	206, 545
HpyAV	CCTTC	5 cut(s)	35, 39, 262, 411, 710
HpyCH4III	ACNGT	3 cut(s)	222, 392, 889
HpyCH4V	TGCA	8 cut(s)	182, 247, 290, 332, 380, 434, 545, 581
HpyF10VI	GCNNNNNNNGC	4 cut(s)	369, 848, 857, 913
HpyF3I	CTNAG	4 cut(s)	275, 441, 875, 911
Kpn2I	TCCGGA	1 cut(s)	744
KspI	CCGCGG	1 cut(s)	564
Kzo9I	GATC	5 cut(s)	271, 423, 649, 826, 965
LmnI	GCTCC	3 cut(s)	865, 904, 935
Lsp1109I	GCAGC	4 cut(s)	194, 392, 565, 750
LweI	GCATC	1 cut(s)	916
MaeI	CTAG	1 cut(s)	707
MaeIII	GTNAC	2 cut(s)	340, 524
MalI	GATC	5 cut(s)	273, 425, 651, 828, 967
MboI	GATC	5 cut(s)	271, 423, 649, 826, 965
MboII	GAAGA	3 cut(s)	51, 386, 389
MflI	RGATCY	2 cut(s)	271, 649
MhlI	GDGCHC	2 cut(s)	547, 697
MluCI	AATT	2 cut(s)	474, 771
MlyI	GAGTC	1 cut(s)	46
MmeI	TCCRAC	1 cut(s)	89
MnlI	CCTC	8 cut(s)	45, 219, 411, 637, 771, 801, 876, 895
MroI	TCCGGA	1 cut(s)	744
MroXI	GAANNNNTTC	1 cut(s)	665
MseI	TTAA	1 cut(s)	45
MslI	CAYNNNNRTG	2 cut(s)	506, 686
MspA1I	CMGCKG	1 cut(s)	563
MspI	CCGG	1 cut(s)	745
Mva1269I	GAATGC	1 cut(s)	372
MvnI	CGCG	1 cut(s)	563
MwoI	GCNNNNNNNGC	4 cut(s)	369, 848, 857, 913
NdeII	GATC	5 cut(s)	271, 423, 649, 826, 965
NlaIV	GGNNCC	2 cut(s)	172, 513
NmuCI	GTSAC	2 cut(s)	340, 524
NspI	RCATGY	1 cut(s)	317
NspV	TTCGAA	1 cut(s)	83
PceI	AGGCCT	1 cut(s)	24
PctI	GAATGC	1 cut(s)	372
PdmI	GAANNNNTTC	1 cut(s)	665
PflMI	CCANNNNNTGG	1 cut(s)	869
PkrI	GCNGC	4 cut(s)	184, 382, 580, 765
PleI	GAGTC	1 cut(s)	46
PpsI	GAGTC	1 cut(s)	46
PspN4I	GGNNCC	2 cut(s)	172, 513
PspPI	GGNCC	1 cut(s)	511
PstI	CTGCAG	1 cut(s)	436
PstNI	CAGNNNCTG	1 cut(s)	440
PsuI	RGATCY	2 cut(s)	271, 649
RsaI	GTAC	1 cut(s)	312
RsaNI	GTAC	1 cut(s)	311
RseI	CAYNNNNRTG	2 cut(s)	506, 686
SacII	CCGCGG	1 cut(s)	564
SaqAI	TTAA	1 cut(s)	45
SatI	GCNGC	4 cut(s)	183, 381, 579, 764
Sau3AI	GATC	5 cut(s)	271, 423, 649, 826, 965
Sau96I	GGNCC	1 cut(s)	511
SchI	GAGTC	1 cut(s)	46
SduI	GDGCHC	2 cut(s)	547, 697
SetI	ASST	9 cut(s)	211, 261, 330, 349, 385, 555, 580, 868, 978
SfaNI	GCATC	1 cut(s)	916
SfcI	CTRYAG	1 cut(s)	432
Sfr303I	CCGCGG	1 cut(s)	564
SfuI	TTCGAA	1 cut(s)	83
SgrBI	CCGCGG	1 cut(s)	564
SinI	GGWCC	1 cut(s)	511
SmiMI	CAYNNNNRTG	2 cut(s)	506, 686
Sse9I	AATT	2 cut(s)	474, 771
SseBI	AGGCCT	1 cut(s)	24
SsiI	CCGC	3 cut(s)	175, 561, 563
SspMI	CTAG	1 cut(s)	707
StuI	AGGCCT	1 cut(s)	24
TaaI	ACNGT	3 cut(s)	222, 392, 889
TaqI	TCGA	3 cut(s)	83, 412, 736
TasI	AATT	2 cut(s)	474, 771
TatI	WGTACW	1 cut(s)	310
Tru1I	TTAA	1 cut(s)	45
Tru9I	TTAA	1 cut(s)	45
TscAI	CASTG	4 cut(s)	127, 227, 441, 792
TseFI	GTSAC	2 cut(s)	340, 524
TseI	GCWGC	4 cut(s)	182, 380, 578, 763
Tsp45I	GTSAC	2 cut(s)	340, 524
TspDTI	ATGAA	3 cut(s)	128, 365, 496
TspGWI	ACGGA	1 cut(s)	659
TspRI	CASTG	4 cut(s)	127, 227, 441, 792
Van91I	CCANNNNNTGG	1 cut(s)	869
VneI	GTGCAC	1 cut(s)	543
VpaK11BI	GGWCC	1 cut(s)	511
XapI	RAATTY	1 cut(s)	474
XceI	RCATGY	1 cut(s)	317
XcmI	CCANNNNNNNNNTGG	1 cut(s)	125
XmnI	GAANNNNTTC	1 cut(s)	665
XspI	CTAG	1 cut(s)	707

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.