Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0006793

Physical Location & Seq

Genomic Coordinates Forward (+)

37841391 .. 37842491

Gene Structure 1101 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0219300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGAAAGATTTAAAAAGAGAAAAATACAGAGAAAAAAGACTATTAAAGAATATACTGATCAAATTTTGCTCCGAGATTACAGGGAAGCCTTTTAGGGTTTTGGAAATCGCAAAGAAAAGCTTGTTGCCTGTCCGGCGGCGCCTCCGCGTCGACTGTGGGTTCCGGCCTCATCCACGAGTGGCGGGTGTTGCCGGACGGGATCGTGGGGGCTCGGGGCTCCGTATCGGGTTTCGGATTCATCCTTCCGGGTCATATACGACGTTTCTCTCTTCTCGGATGGCAGCGCAGGCGTGCAGGATGGGTGGCTGGGATTCGACGCAGGCTTGGAGCAGGTGGCCTGAGGCCAGATCGTGGCGGCGGTATGCCATGGATTGTATGGCACTGGCTATCTCTCTGAGATGGGTTGATAGGCGGATCAAGCGGACGGACAAGGCCGGGCGGCAAGGCATGGAGAGTTTCGCACTGGATCTCGGTGTGGACTCGTCGGGATCTGGGTTTAATTCTGGTTTCGGCCAACAACAGTTGAGGTCGGCGTGGCTTGCTGTGCGGACTGTGTCTTTCCGGCGATGTGAGTTTGACGGGGCAGTGTTATGGAGGTGGCTTGCCGGCGGGCCACCTAAGGAGAAGGAAGACGGGTTGGGTCAATTTGAGGTGCCATGGATGTGGTGTCATTCCTGGGGACGAATTGGTTTAATTTCGGTGTTATCTTATGGTCAATGTGCTAACGAGCGATCCTTGCACGTGGTCTGGTATCTTTGGGACACGGTGTGGAAGAGGGCGTTGGTTTTTCTGGCGATTGTCTATGAGGTGGTATCAAGATTCTCGGGATTTCTTGTAGCCCGAGTGGTTGGGCGTTATAGGTGGTTAGGGGTTGGGCCCCTTCGGCTCATGGAAGTCATTCTTGATGACGGACCCATAACTGGTTTAGGTTTTAGGGAAGAGAGTGGGGAGTTCATGTCCACCACCGGTCATTCCCGTATGGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PseudoU_synth_1

Protein Analysis

328

Amino Acids

37.49

Weight (kDa)

10.42

Isoelectric Point (pI)

56.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006793)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06950
fragaria_vesca	FvH4_4g21570 FvH4_4g21570 FvH4_4g21570
malus_domestica	MD13G1140300.v1.1 MD16G1135500.v1.1
prunus_persica	Prupe.1G104700_v2.0.a1 Prupe.1G104700_v2.0.a1 Prupe.1G104700_v2.0.a1 Prupe.1G104700_v2.0.a1
pyrus_communis	pycom13g12200 pycom16g11950
rosa_chinensis	RchiOBHm_Chr4g0427681
rosa_laevigata	RLG00000007217
rosa_multiflora	Rmu_sc0003399.1_g000003 Rmu_sc0016038.1_g000001
rosa_roxburghii	Rroxscaffold_5G00369310
rosa_rugosa	Rorug04G0219100 Rorug04G0219200 Rorug04G0219300 Rorug04G0219400
rosa_samantha	Rh4AG275600 Rh4BG281600 Rh4CG297100 Rh4DG279000
rosa_wichuraiana	Rw4G023920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	321
Acc36I	ACCTGC	1 cut(s)	321
AccB1I	GGYRCC	2 cut(s)	138, 652
AccB7I	CCANNNNNTGG	1 cut(s)	351
AccI	GTMKAC	1 cut(s)	150
AccII	CGCG	1 cut(s)	147
AclWI	GGATC	5 cut(s)	207, 422, 474, 496, 726
AcoI	YGGCCR	1 cut(s)	511
AcsI	RAATTY	1 cut(s)	62
AcvI	CACGTG	1 cut(s)	742
AcyI	GRCGYC	1 cut(s)	139
AdeI	CACNNNGTG	1 cut(s)	768
AfiI	CCNNNNNNNGG	2 cut(s)	351, 920
AgeI	ACCGGT	1 cut(s)	965
AjnI	CCWGG	1 cut(s)	674
AjuI	GAANNNNNNNTTGG	2 cut(s)	764, 796
AluBI	AGCT	1 cut(s)	120
AluI	AGCT	1 cut(s)	120
AlwI	GGATC	5 cut(s)	207, 422, 474, 496, 726
Ama87I	CYCGRG	3 cut(s)	211, 823, 840
AoxI	GGCC	7 cut(s)	164, 335, 342, 432, 511, 611, 875
ApaI	GGGCCC	1 cut(s)	879
ApeKI	GCWGC	1 cut(s)	281
ApoI	RAATTY	1 cut(s)	62
AsiGI	ACCGGT	1 cut(s)	965
Asp700I	GAANNNNTTC	1 cut(s)	897
AspLEI	GCGC	2 cut(s)	141, 286
AspS9I	GGNCC	4 cut(s)	611, 875, 876, 911
AsuC2I	CCSGG	2 cut(s)	247, 436
AvaI	CYCGRG	3 cut(s)	211, 823, 840
AvaII	GGWCC	1 cut(s)	911
AxyI	CCTNAGG	2 cut(s)	339, 618
BaeGI	GKGCMC	1 cut(s)	879
BanI	GGYRCC	2 cut(s)	138, 652
BanII	GRGCYC	3 cut(s)	212, 219, 879
BauI	CACGAG	1 cut(s)	174
BbrPI	CACGTG	1 cut(s)	742
BbsI	GAAGAC	1 cut(s)	636
BbvI	GCAGC	1 cut(s)	293
BccI	CCATC	3 cut(s)	271, 292, 393
BciT130I	CCWGG	1 cut(s)	676
BclI	TGATCA	1 cut(s)	57
BcnI	CCSGG	2 cut(s)	247, 436
BfoI	RGCGCY	1 cut(s)	142
BfuAI	ACCTGC	1 cut(s)	321
BglI	GCCNNNNNGGC	2 cut(s)	133, 883
BisI	GCNGC	4 cut(s)	137, 282, 356, 440
BlsI	GCNGC	4 cut(s)	138, 283, 357, 441
Bme1390I	CCNGG	3 cut(s)	247, 436, 676
Bme18I	GGWCC	1 cut(s)	911
BmeT110I	CYCGRG	3 cut(s)	211, 823, 840
BmgT120I	GGNCC	4 cut(s)	611, 875, 876, 911
BmiI	GGNNCC	7 cut(s)	140, 161, 218, 654, 877, 878, 913
BmrFI	CCNGG	3 cut(s)	247, 436, 676
BpiI	GAAGAC	1 cut(s)	636
BpuMI	CCSGG	2 cut(s)	247, 436
BsaAI	YACGTR	1 cut(s)	742
BsaHI	GRCGYC	1 cut(s)	139
BsaJI	CCNNGG	3 cut(s)	366, 656, 675
BsaWI	WCCGGW	1 cut(s)	965
BsaXI	ACNNNNNCTCC	2 cut(s)	941, 971
Bsc4I	CCNNNNNNNGG	2 cut(s)	351, 920
Bse118I	RCCGGY	2 cut(s)	605, 965
Bse1I	ACTGG	3 cut(s)	387, 468, 925
Bse21I	CCTNAGG	2 cut(s)	339, 618
BseBI	CCWGG	1 cut(s)	676
BseDI	CCNNGG	3 cut(s)	366, 656, 675
BseGI	GGATG	5 cut(s)	169, 238, 282, 303, 666
BseLI	CCNNNNNNNGG	2 cut(s)	351, 920
BseMII	CTCAG	2 cut(s)	330, 386
BseNI	ACTGG	3 cut(s)	387, 468, 925
BseSI	GKGCMC	1 cut(s)	879
BseXI	GCAGC	1 cut(s)	293
BseYI	CCCAGC	1 cut(s)	306
BsgI	GTGCAG	1 cut(s)	313
Bsh1236I	CGCG	1 cut(s)	147
BshFI	GGCC	7 cut(s)	166, 337, 344, 434, 513, 613, 877
BshNI	GGYRCC	2 cut(s)	138, 652
BshTI	ACCGGT	1 cut(s)	965
BsiHKCI	CYCGRG	3 cut(s)	211, 823, 840
BsiSI	CCGG	8 cut(s)	133, 163, 192, 246, 435, 562, 606, 966
BslFI	GGGAC	2 cut(s)	693, 773
BslI	CCNNNNNNNGG	2 cut(s)	351, 920
BsmFI	GGGAC	2 cut(s)	693, 773
BsnI	GGCC	7 cut(s)	166, 337, 344, 434, 513, 613, 877
BsoBI	CYCGRG	3 cut(s)	211, 823, 840
Bsp120I	GGGCCC	1 cut(s)	875
Bsp1286I	GDGCHC	3 cut(s)	212, 219, 879
Bsp143I	GATC	7 cut(s)	57, 199, 347, 414, 466, 488, 731
Bsp19I	CCATGG	2 cut(s)	366, 656
BspANI	GGCC	7 cut(s)	166, 337, 344, 434, 513, 613, 877
BspCNI	CTCAG	2 cut(s)	331, 387
BspFNI	CGCG	1 cut(s)	147
BspLI	GGNNCC	7 cut(s)	140, 161, 218, 654, 877, 878, 913
BspMI	ACCTGC	1 cut(s)	321
BspPI	GGATC	5 cut(s)	207, 422, 474, 496, 726
BspT107I	GGYRCC	2 cut(s)	138, 652
BsrFI	RCCGGY	2 cut(s)	605, 965
BsrI	ACTGG	3 cut(s)	387, 468, 925
BssAI	RCCGGY	2 cut(s)	605, 965
BssECI	CCNNGG	3 cut(s)	366, 656, 675
BssMI	GATC	7 cut(s)	57, 199, 347, 414, 466, 488, 731
BssNI	GRCGYC	1 cut(s)	139
BssSI	CACGAG	1 cut(s)	174
BssT1I	CCWWGG	2 cut(s)	366, 656
Bst2BI	CACGAG	1 cut(s)	174
Bst2UI	CCWGG	1 cut(s)	676
Bst4CI	ACNGT	4 cut(s)	155, 522, 553, 766
Bst6I	CTCTTC	3 cut(s)	274, 767, 933
BstACI	GRCGYC	1 cut(s)	139
BstBAI	YACGTR	1 cut(s)	742
BstC8I	GCNNGC	7 cut(s)	288, 292, 321, 540, 603, 607, 611
BstDEI	CTNAG	3 cut(s)	339, 395, 618
BstDSI	CCRYGG	2 cut(s)	366, 656
BstF5I	GGATG	5 cut(s)	169, 238, 282, 303, 666
BstFNI	CGCG	1 cut(s)	147
BstH2I	RGCGCY	1 cut(s)	142
BstHHI	GCGC	2 cut(s)	141, 286
BstKTI	GATC	7 cut(s)	60, 202, 350, 417, 469, 491, 734
BstMBI	GATC	7 cut(s)	57, 199, 347, 414, 466, 488, 731
BstMWI	GCNNNNNNNGC	8 cut(s)	133, 188, 287, 418, 539, 544, 736, 883
BstNI	CCWGG	1 cut(s)	676
BstSCI	CCNGG	3 cut(s)	245, 434, 674
BstSLI	GKGCMC	1 cut(s)	879
BstUI	CGCG	1 cut(s)	147
BstV1I	GCAGC	1 cut(s)	293
BstV2I	GAAGAC	1 cut(s)	636
BstX2I	RGATCY	2 cut(s)	466, 488
BstXI	CCANNNNNNTGG	1 cut(s)	663
BstYI	RGATCY	2 cut(s)	466, 488
Bsu36I	CCTNAGG	2 cut(s)	339, 618
BsuRI	GGCC	7 cut(s)	166, 337, 344, 434, 513, 613, 877
BtgI	CCRYGG	2 cut(s)	366, 656
BtgZI	GCGATG	1 cut(s)	580
BtsCI	GGATG	5 cut(s)	169, 238, 282, 303, 666
BtsI	GCAGTG	1 cut(s)	591
BtsIMutI	CAGTG	3 cut(s)	380, 461, 591
BveI	ACCTGC	1 cut(s)	321
Cac8I	GCNNGC	7 cut(s)	288, 292, 321, 540, 603, 607, 611
CfoI	GCGC	2 cut(s)	141, 286
Cfr10I	RCCGGY	2 cut(s)	605, 965
Cfr13I	GGNCC	4 cut(s)	611, 875, 876, 911
CseI	GACGC	2 cut(s)	136, 325
CspAI	ACCGGT	1 cut(s)	965
CviAII	CATG	5 cut(s)	367, 448, 657, 889, 955
DdeI	CTNAG	3 cut(s)	339, 395, 618
DinI	GGCGCC	1 cut(s)	140
DpnI	GATC	7 cut(s)	59, 201, 349, 416, 468, 490, 733
DpnII	GATC	7 cut(s)	57, 199, 347, 414, 466, 488, 731
DraI	TTTAAA	1 cut(s)	12
DraIII	CACNNNGTG	1 cut(s)	768
EaeI	YGGCCR	1 cut(s)	511
Eam1104I	CTCTTC	3 cut(s)	274, 767, 933
EarI	CTCTTC	3 cut(s)	274, 767, 933
EciI	GGCGGA	1 cut(s)	427
Eco130I	CCWWGG	2 cut(s)	366, 656
Eco24I	GRGCYC	3 cut(s)	212, 219, 879
Eco47I	GGWCC	1 cut(s)	911
Eco72I	CACGTG	1 cut(s)	742
Eco81I	CCTNAGG	2 cut(s)	339, 618
Eco88I	CYCGRG	3 cut(s)	211, 823, 840
EcoO109I	RGGNCCY	1 cut(s)	876
EcoRII	CCWGG	1 cut(s)	674
EcoT14I	CCWWGG	2 cut(s)	366, 656
EcoT38I	GRGCYC	3 cut(s)	212, 219, 879
EgeI	GGCGCC	1 cut(s)	140
EheI	GGCGCC	1 cut(s)	140
ErhI	CCWWGG	2 cut(s)	366, 656
FaeI	CATG	5 cut(s)	370, 451, 660, 892, 958
FalI	AAGNNNNNCTT	4 cut(s)	104, 136, 885, 917
FaqI	GGGAC	2 cut(s)	693, 773
FatI	CATG	5 cut(s)	366, 447, 656, 888, 954
FauI	CCCGC	2 cut(s)	175, 602
FbaI	TGATCA	1 cut(s)	57
FblI	GTMKAC	1 cut(s)	150
Fnu4HI	GCNGC	4 cut(s)	137, 282, 356, 440
FokI	GGATG	5 cut(s)	156, 225, 289, 310, 673
FriOI	GRGCYC	3 cut(s)	212, 219, 879
Fsp4HI	GCNGC	4 cut(s)	137, 282, 356, 440
GlaI	GCGC	2 cut(s)	140, 285
GluI	GCNGC	4 cut(s)	137, 282, 356, 440
GsaI	CCCAGC	1 cut(s)	310
HaeII	RGCGCY	1 cut(s)	142
HaeIII	GGCC	7 cut(s)	166, 337, 344, 434, 513, 613, 877
HapII	CCGG	8 cut(s)	133, 163, 192, 246, 435, 562, 606, 966
HgaI	GACGC	2 cut(s)	136, 325
HhaI	GCGC	2 cut(s)	141, 286
Hin1I	GRCGYC	1 cut(s)	139
Hin1II	CATG	5 cut(s)	370, 451, 660, 892, 958
Hin6I	GCGC	2 cut(s)	139, 284
HinP1I	GCGC	2 cut(s)	139, 284
HincII	GTYRAC	1 cut(s)	151
HindII	GTYRAC	1 cut(s)	151
HindIII	AAGCTT	1 cut(s)	118
HinfI	GANTC	4 cut(s)	235, 311, 479, 819
HpaII	CCGG	8 cut(s)	133, 163, 192, 246, 435, 562, 606, 966
Hpy166II	GTNNAC	3 cut(s)	151, 478, 960
Hpy188I	TCNGA	4 cut(s)	73, 234, 276, 396
Hpy188III	TCNNGA	4 cut(s)	486, 816, 825, 902
Hpy8I	GTNNAC	3 cut(s)	151, 478, 960
Hpy99I	CGWCG	4 cut(s)	152, 262, 319, 487
HpyAV	CCTTC	3 cut(s)	252, 619, 890
HpyCH4III	ACNGT	4 cut(s)	155, 522, 553, 766
HpyCH4IV	ACGT	2 cut(s)	260, 741
HpyCH4V	TGCA	2 cut(s)	294, 739
HpyF10VI	GCNNNNNNNGC	8 cut(s)	133, 188, 287, 418, 539, 544, 736, 883
HpyF3I	CTNAG	3 cut(s)	339, 395, 618
HpySE526I	ACGT	2 cut(s)	260, 741
Hsp92I	GRCGYC	1 cut(s)	139
Hsp92II	CATG	5 cut(s)	370, 451, 660, 892, 958
HspAI	GCGC	2 cut(s)	139, 284
KasI	GGCGCC	1 cut(s)	138
KroI	GCCGGC	1 cut(s)	605
KroNI	GCCGGC	1 cut(s)	607
Ksp22I	TGATCA	1 cut(s)	57
Kzo9I	GATC	7 cut(s)	57, 199, 347, 414, 466, 488, 731
LmnI	GCTCC	3 cut(s)	74, 222, 327
Lsp1109I	GCAGC	1 cut(s)	293
MaeII	ACGT	2 cut(s)	260, 741
MalI	GATC	7 cut(s)	59, 201, 349, 416, 468, 490, 733
MboI	GATC	7 cut(s)	57, 199, 347, 414, 466, 488, 731
MboII	GAAGA	4 cut(s)	261, 641, 784, 950
MflI	RGATCY	2 cut(s)	466, 488
MhlI	GDGCHC	3 cut(s)	212, 219, 879
MluCI	AATT	5 cut(s)	62, 499, 644, 684, 693
Mly113I	GGCGCC	1 cut(s)	139
MlyI	GAGTC	1 cut(s)	473
MnlI	CCTC	8 cut(s)	152, 177, 334, 519, 588, 643, 768, 799
MroNI	GCCGGC	1 cut(s)	605
MroXI	GAANNNNTTC	1 cut(s)	897
MseI	TTAA	4 cut(s)	11, 44, 498, 692
MslI	CAYNNNNRTG	1 cut(s)	661
MspI	CCGG	8 cut(s)	133, 163, 192, 246, 435, 562, 606, 966
MspR9I	CCNGG	3 cut(s)	247, 436, 676
MvaI	CCWGG	1 cut(s)	676
MvnI	CGCG	1 cut(s)	147
MwoI	GCNNNNNNNGC	8 cut(s)	133, 188, 287, 418, 539, 544, 736, 883
NaeI	GCCGGC	1 cut(s)	607
NarI	GGCGCC	1 cut(s)	139
NciI	CCSGG	2 cut(s)	247, 436
NcoI	CCATGG	2 cut(s)	366, 656
NdeII	GATC	7 cut(s)	57, 199, 347, 414, 466, 488, 731
NgoMIV	GCCGGC	1 cut(s)	605
NlaIII	CATG	5 cut(s)	370, 451, 660, 892, 958
NlaIV	GGNNCC	7 cut(s)	140, 161, 218, 654, 877, 878, 913
PaqCI	CACCTGC	1 cut(s)	321
PdiI	GCCGGC	1 cut(s)	607
PdmI	GAANNNNTTC	1 cut(s)	897
PfeI	GAWTC	3 cut(s)	235, 311, 819
PflFI	GACNNNGTC	1 cut(s)	553
PflMI	CCANNNNNTGG	1 cut(s)	351
PinAI	ACCGGT	1 cut(s)	965
PkrI	GCNGC	4 cut(s)	138, 283, 357, 441
PleI	GAGTC	1 cut(s)	473
PluTI	GGCGCC	1 cut(s)	142
PmaCI	CACGTG	1 cut(s)	742
PmlI	CACGTG	1 cut(s)	742
PpsI	GAGTC	1 cut(s)	473
Ppu21I	YACGTR	1 cut(s)	742
Psp6I	CCWGG	1 cut(s)	674
PspCI	CACGTG	1 cut(s)	742
PspFI	CCCAGC	1 cut(s)	306
PspGI	CCWGG	1 cut(s)	674
PspN4I	GGNNCC	7 cut(s)	140, 161, 218, 654, 877, 878, 913
PspOMI	GGGCCC	1 cut(s)	875
PspPI	GGNCC	4 cut(s)	611, 875, 876, 911
PsuI	RGATCY	2 cut(s)	466, 488
PsyI	GACNNNGTC	1 cut(s)	553
RseI	CAYNNNNRTG	1 cut(s)	661
SalI	GTCGAC	1 cut(s)	149
SaqAI	TTAA	4 cut(s)	11, 44, 498, 692
SatI	GCNGC	4 cut(s)	137, 282, 356, 440
Sau3AI	GATC	7 cut(s)	57, 199, 347, 414, 466, 488, 731
Sau96I	GGNCC	4 cut(s)	611, 875, 876, 911
SchI	GAGTC	1 cut(s)	473
ScrFI	CCNGG	3 cut(s)	247, 436, 676
SduI	GDGCHC	3 cut(s)	212, 219, 879
SfoI	GGCGCC	1 cut(s)	140
SinI	GGWCC	1 cut(s)	911
SmiMI	CAYNNNNRTG	1 cut(s)	661
Sse9I	AATT	5 cut(s)	62, 499, 644, 684, 693
SspDI	GGCGCC	1 cut(s)	138
StyD4I	CCNGG	3 cut(s)	245, 434, 674
StyI	CCWWGG	2 cut(s)	366, 656
TaaI	ACNGT	4 cut(s)	155, 522, 553, 766
TaiI	ACGT	2 cut(s)	263, 744
TaqI	TCGA	2 cut(s)	150, 314
TasI	AATT	5 cut(s)	62, 499, 644, 684, 693
TauI	GCSGC	3 cut(s)	139, 358, 442
TfiI	GAWTC	3 cut(s)	235, 311, 819
Tru1I	TTAA	4 cut(s)	11, 44, 498, 692
Tru9I	TTAA	4 cut(s)	11, 44, 498, 692
TscAI	CASTG	3 cut(s)	387, 468, 591
TseI	GCWGC	1 cut(s)	281
TspDTI	ATGAA	3 cut(s)	17, 227, 943
TspGWI	ACGGA	3 cut(s)	209, 440, 924
TspRI	CASTG	3 cut(s)	387, 468, 591
Tth111I	GACNNNGTC	1 cut(s)	553
Van91I	CCANNNNNTGG	1 cut(s)	351
VpaK11BI	GGWCC	1 cut(s)	911
XapI	RAATTY	1 cut(s)	62
XcmI	CCANNNNNNNNNTGG	1 cut(s)	373
XmiI	GTMKAC	1 cut(s)	150
XmnI	GAANNNNTTC	1 cut(s)	897

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.