Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0006793

Physical Location & Seq

Genomic Coordinates Reverse (-)

8344953 .. 8348479

Gene Structure 3527 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g11950.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGGCAATCTCTAAAGCTATCTCTCTTAAACTGGATTTGAAAGAAGAGGGGGAGGACGATGGAAAGCCTGATGAGGTGCAGAAGCTGGATTCAATAGAGAAGGTAGAAGAGGATGAAGCTGGTGAGTGGCAGAATGTGGATTTGAAGACAGAGGATGAAGCTGGTAAGTTGCAGAAGGTGGATTTGAAGGCGGAGGAGGATGGAGCTGGTGAGTTGCAGAAGGTGGATTTGAAGGCGGATGAGGGTGGAGAGGGAAACAAAAAGGATGGAATTGGAGAGCAAATGGTAAAGAAGCAGACAGGGGATGGTGGGTACAAGTGGCGCTTGGTGATTGCTTACGACGGCACCCGTTATGCAGGATGGCAATATCAGAGTTCCCCACCCACCGTACAGTGCTTTGTGGAGAAAGCTCTAATGAGCGCTACGAAGCTGGAAAGGAACGATCTTCATTTCGTCGGTGCAAGTAGGACGGATAAAGGAGTACATGCCTGGGGTCAGGTTGCACACTTTGTCACACCCTTCGGCTATGACAGCATTGAAAGCATTCACGCTGCTCTCAATGGTCTTCTTCCTGATGATATCCGAGTTAGGGAGATCAATCCGGCAGTGCCTGAATTCCATGCTCGTTTTTCAGCGAAAAGCAAGATTTATCATTACAAAATATATAACGACACTTTCATGGATCCATTTCAGCGCCACTATGCTTACCATAGTGCTCATAAGCTAAACGCCGCTGTTATGCGAGAAGCTGCAAATTATTTTATTGGAAACCATGATTTCTCTGCTTTTGTCAATGCTTCCCAGAAGGAACGAGTGCGTGATCCAGTGAAGGATATATTCCGTTTTGATGTCATTGAATTGGGAGTTCTTTTACGGCTAGAAGTTGAAGGCTCCGGCTTCTTATACAGACAAGTCCGGAACATGGTCGCTCTGCTGATTCAAATTGGAAGAGAAGCACTTCCTCCTGATATTGTTCCCAAGATATTGGCAACACGAGATCGGAGAGCGCTTGCCAAATATACCATGTTTGCTCCACCTCACGGGCTCTGTCTTGTGACGGTCAAGTACAACGAGGCGCATCTACGGCTTCCATCCGGTTCCTTCACAACCAGTTTTGGTAGGCATTATACTATTGGCTCATGTAAGCTTCCATTCTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PseudoU_synth_1

Protein Analysis

387

Amino Acids

43.49

Weight (kDa)

6.14

Isoelectric Point (pI)

37.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006793)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06950
fragaria_vesca	FvH4_4g21570 FvH4_4g21570 FvH4_4g21570
malus_domestica	MD13G1140300.v1.1 MD16G1135500.v1.1
prunus_persica	Prupe.1G104700_v2.0.a1 Prupe.1G104700_v2.0.a1 Prupe.1G104700_v2.0.a1 Prupe.1G104700_v2.0.a1
pyrus_communis	pycom13g12200 pycom16g11950
rosa_chinensis	RchiOBHm_Chr4g0427681
rosa_laevigata	RLG00000007217
rosa_multiflora	Rmu_sc0003399.1_g000003 Rmu_sc0016038.1_g000001
rosa_roxburghii	Rroxscaffold_5G00369310
rosa_rugosa	Rorug04G0219100 Rorug04G0219200 Rorug04G0219300 Rorug04G0219400
rosa_samantha	Rh4AG275600 Rh4BG281600 Rh4CG297100 Rh4DG279000
rosa_wichuraiana	Rw4G023920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	344
AccIII	TCCGGA	1 cut(s)	915
AciI	CCGC	3 cut(s)	191, 236, 732
AclWI	GGATC	3 cut(s)	677, 690, 815
AcsI	RAATTY	1 cut(s)	614
AfaI	GTAC	4 cut(s)	314, 390, 483, 1067
AfeI	AGCGCT	2 cut(s)	421, 1008
AfiI	CCNNNNNNNGG	3 cut(s)	589, 922, 1040
AgsI	TTSAA	9 cut(s)	40, 93, 145, 187, 232, 539, 857, 887, 941
AjnI	CCWGG	1 cut(s)	488
Alw21I	GWGCWC	1 cut(s)	718
AlwI	GGATC	3 cut(s)	677, 690, 815
AlwNI	CAGNNNCTG	2 cut(s)	85, 611
Aor13HI	TCCGGA	1 cut(s)	915
Aor51HI	AGCGCT	2 cut(s)	421, 1008
ApeKI	GCWGC	2 cut(s)	551, 749
ApoI	RAATTY	1 cut(s)	614
Asp700I	GAANNNNTTC	2 cut(s)	543, 957
AspLEI	GCGC	5 cut(s)	324, 422, 696, 1009, 1078
AsuHPI	GGTGA	3 cut(s)	134, 221, 340
BamHI	GGATCC	1 cut(s)	682
BanI	GGYRCC	1 cut(s)	344
BanII	GRGCYC	1 cut(s)	1047
BauI	CACGAG	1 cut(s)	993
BbsI	GAAGAC	2 cut(s)	152, 557
Bbv12I	GWGCWC	1 cut(s)	718
BbvI	GCAGC	2 cut(s)	538, 736
BccI	CCATC	6 cut(s)	53, 194, 260, 299, 354, 1099
BceAI	ACGGC	3 cut(s)	358, 890, 1100
BciT130I	CCWGG	1 cut(s)	490
BfaI	CTAG	1 cut(s)	878
BfoI	RGCGCY	4 cut(s)	325, 423, 697, 1010
BisI	GCNGC	3 cut(s)	552, 732, 750
BlsI	GCNGC	3 cut(s)	553, 733, 751
Bme1390I	CCNGG	1 cut(s)	490
BmiI	GGNNCC	4 cut(s)	346, 684, 892, 1099
BmrFI	CCNGG	1 cut(s)	490
BmsI	GCATC	1 cut(s)	1087
BpiI	GAAGAC	2 cut(s)	152, 557
BsaJI	CCNNGG	1 cut(s)	489
BsaWI	WCCGGW	2 cut(s)	915, 1094
Bsc4I	CCNNNNNNNGG	3 cut(s)	589, 922, 1040
Bse1I	ACTGG	3 cut(s)	36, 824, 1110
BseAI	TCCGGA	1 cut(s)	915
BseBI	CCWGG	1 cut(s)	490
BseDI	CCNNGG	1 cut(s)	489
BseGI	GGATG	8 cut(s)	118, 160, 205, 244, 271, 310, 365, 1091
BseLI	CCNNNNNNNGG	3 cut(s)	589, 922, 1040
BseNI	ACTGG	3 cut(s)	36, 824, 1110
BseRI	GAGGAG	1 cut(s)	209
BseXI	GCAGC	2 cut(s)	538, 736
BsgI	GTGCAG	1 cut(s)	98
BshNI	GGYRCC	1 cut(s)	344
BsiHKAI	GWGCWC	1 cut(s)	718
BsiSI	CCGG	4 cut(s)	602, 894, 916, 1095
BslI	CCNNNNNNNGG	3 cut(s)	589, 922, 1040
BsmI	GAATGC	1 cut(s)	543
Bsp1286I	GDGCHC	2 cut(s)	718, 1047
Bsp13I	TCCGGA	1 cut(s)	915
Bsp143I	GATC	5 cut(s)	442, 594, 682, 820, 997
BspACI	CCGC	3 cut(s)	191, 236, 732
BspEI	TCCGGA	1 cut(s)	915
BspLI	GGNNCC	4 cut(s)	346, 684, 892, 1099
BspPI	GGATC	3 cut(s)	677, 690, 815
BspT107I	GGYRCC	1 cut(s)	344
BsrI	ACTGG	3 cut(s)	36, 824, 1110
BssECI	CCNNGG	1 cut(s)	489
BssMI	GATC	5 cut(s)	442, 594, 682, 820, 997
BssSI	CACGAG	1 cut(s)	993
Bst2BI	CACGAG	1 cut(s)	993
Bst2UI	CCWGG	1 cut(s)	490
Bst4CI	ACNGT	3 cut(s)	388, 393, 1060
Bst6I	CTCTTC	3 cut(s)	39, 102, 943
BstC8I	GCNNGC	1 cut(s)	1011
BstF5I	GGATG	8 cut(s)	118, 160, 205, 244, 271, 310, 365, 1091
BstH2I	RGCGCY	4 cut(s)	325, 423, 697, 1010
BstHHI	GCGC	5 cut(s)	324, 422, 696, 1009, 1078
BstKTI	GATC	5 cut(s)	445, 597, 685, 823, 1000
BstMBI	GATC	5 cut(s)	442, 594, 682, 820, 997
BstMWI	GCNNNNNNNGC	3 cut(s)	531, 540, 1084
BstNI	CCWGG	1 cut(s)	490
BstNSI	RCATGY	1 cut(s)	488
BstSCI	CCNGG	1 cut(s)	488
BstV1I	GCAGC	2 cut(s)	538, 736
BstV2I	GAAGAC	2 cut(s)	152, 557
BstX2I	RGATCY	1 cut(s)	682
BstXI	CCANNNNNNTGG	1 cut(s)	985
BstYI	RGATCY	1 cut(s)	682
BtsCI	GGATG	8 cut(s)	118, 160, 205, 244, 271, 310, 365, 1091
BtsI	GCAGTG	1 cut(s)	612
BtsIMutI	CAGTG	3 cut(s)	398, 612, 831
Cac8I	GCNNGC	1 cut(s)	1011
CaiI	CAGNNNCTG	2 cut(s)	85, 611
CfoI	GCGC	5 cut(s)	324, 422, 696, 1009, 1078
Csp6I	GTAC	4 cut(s)	313, 389, 482, 1066
CviAII	CATG	7 cut(s)	485, 620, 679, 773, 922, 1024, 1140
CviQI	GTAC	4 cut(s)	313, 389, 482, 1066
DpnI	GATC	5 cut(s)	444, 596, 684, 822, 999
DpnII	GATC	5 cut(s)	442, 594, 682, 820, 997
Eam1104I	CTCTTC	3 cut(s)	39, 102, 943
EarI	CTCTTC	3 cut(s)	39, 102, 943
EciI	GGCGGA	2 cut(s)	206, 251
Eco24I	GRGCYC	1 cut(s)	1047
Eco32I	GATATC	1 cut(s)	580
Eco47III	AGCGCT	2 cut(s)	421, 1008
EcoRI	GAATTC	1 cut(s)	614
EcoRII	CCWGG	1 cut(s)	488
EcoRV	GATATC	1 cut(s)	580
EcoT38I	GRGCYC	1 cut(s)	1047
FaeI	CATG	7 cut(s)	488, 623, 682, 776, 925, 1027, 1143
FalI	AAGNNNNNCTT	2 cut(s)	308, 340
FatI	CATG	7 cut(s)	484, 619, 678, 772, 921, 1023, 1139
Fnu4HI	GCNGC	3 cut(s)	552, 732, 750
FokI	GGATG	8 cut(s)	125, 167, 212, 251, 278, 317, 372, 1078
FriOI	GRGCYC	1 cut(s)	1047
Fsp4HI	GCNGC	3 cut(s)	552, 732, 750
FspBI	CTAG	1 cut(s)	878
GlaI	GCGC	5 cut(s)	323, 421, 695, 1008, 1077
GluI	GCNGC	3 cut(s)	552, 732, 750
HaeII	RGCGCY	4 cut(s)	325, 423, 697, 1010
HapII	CCGG	4 cut(s)	602, 894, 916, 1095
HhaI	GCGC	5 cut(s)	324, 422, 696, 1009, 1078
Hin1II	CATG	7 cut(s)	488, 623, 682, 776, 925, 1027, 1143
Hin6I	GCGC	5 cut(s)	322, 420, 694, 1007, 1076
HinP1I	GCGC	5 cut(s)	322, 420, 694, 1007, 1076
HindIII	AAGCTT	1 cut(s)	1145
HinfI	GANTC	2 cut(s)	89, 937
HpaII	CCGG	4 cut(s)	602, 894, 916, 1095
HphI	GGTGA	3 cut(s)	134, 221, 340
Hpy188I	TCNGA	3 cut(s)	372, 584, 1002
Hpy188III	TCNNGA	3 cut(s)	572, 916, 965
Hpy99I	CGWCG	2 cut(s)	344, 458
HpyCH4III	ACNGT	3 cut(s)	388, 393, 1060
HpyCH4V	TGCA	7 cut(s)	79, 172, 217, 356, 461, 503, 752
HpyF10VI	GCNNNNNNNGC	3 cut(s)	531, 540, 1084
Hsp92II	CATG	7 cut(s)	488, 623, 682, 776, 925, 1027, 1143
HspAI	GCGC	5 cut(s)	322, 420, 694, 1007, 1076
Kpn2I	TCCGGA	1 cut(s)	915
Kzo9I	GATC	5 cut(s)	442, 594, 682, 820, 997
LmnI	GCTCC	3 cut(s)	203, 896, 1036
Lsp1109I	GCAGC	2 cut(s)	538, 736
LweI	GCATC	1 cut(s)	1087
MaeI	CTAG	1 cut(s)	878
MaeIII	GTNAC	2 cut(s)	511, 1054
MalI	GATC	5 cut(s)	444, 596, 684, 822, 999
MboI	GATC	5 cut(s)	442, 594, 682, 820, 997
MboII	GAAGA	7 cut(s)	56, 119, 157, 437, 557, 560, 960
MflI	RGATCY	1 cut(s)	682
MhlI	GDGCHC	2 cut(s)	718, 1047
MluCI	AATT	5 cut(s)	270, 614, 754, 857, 942
MroI	TCCGGA	1 cut(s)	915
MroXI	GAANNNNTTC	2 cut(s)	543, 957
MseI	TTAA	1 cut(s)	27
MslI	CAYNNNNRTG	1 cut(s)	677
MspA1I	CMGCKG	1 cut(s)	734
MspI	CCGG	4 cut(s)	602, 894, 916, 1095
MspR9I	CCNGG	1 cut(s)	490
Mva1269I	GAATGC	1 cut(s)	543
MvaI	CCWGG	1 cut(s)	490
MwoI	GCNNNNNNNGC	3 cut(s)	531, 540, 1084
NdeII	GATC	5 cut(s)	442, 594, 682, 820, 997
NlaIII	CATG	7 cut(s)	488, 623, 682, 776, 925, 1027, 1143
NlaIV	GGNNCC	4 cut(s)	346, 684, 892, 1099
NmuCI	GTSAC	2 cut(s)	511, 1054
NspI	RCATGY	1 cut(s)	488
PctI	GAATGC	1 cut(s)	543
PdmI	GAANNNNTTC	2 cut(s)	543, 957
PfeI	GAWTC	2 cut(s)	89, 937
PkrI	GCNGC	3 cut(s)	553, 733, 751
Psp6I	CCWGG	1 cut(s)	488
PspGI	CCWGG	1 cut(s)	488
PspN4I	GGNNCC	4 cut(s)	346, 684, 892, 1099
PstNI	CAGNNNCTG	2 cut(s)	85, 611
PsuI	RGATCY	1 cut(s)	682
RsaI	GTAC	4 cut(s)	314, 390, 483, 1067
RsaNI	GTAC	4 cut(s)	313, 389, 482, 1066
RseI	CAYNNNNRTG	1 cut(s)	677
SaqAI	TTAA	1 cut(s)	27
SatI	GCNGC	3 cut(s)	552, 732, 750
Sau3AI	GATC	5 cut(s)	442, 594, 682, 820, 997
ScrFI	CCNGG	1 cut(s)	490
SduI	GDGCHC	2 cut(s)	718, 1047
SfaNI	GCATC	1 cut(s)	1087
SmiMI	CAYNNNNRTG	1 cut(s)	677
Sse9I	AATT	5 cut(s)	270, 614, 754, 857, 942
SsiI	CCGC	3 cut(s)	191, 236, 732
SspMI	CTAG	1 cut(s)	878
StyD4I	CCNGG	1 cut(s)	488
TaaI	ACNGT	3 cut(s)	388, 393, 1060
TasI	AATT	5 cut(s)	270, 614, 754, 857, 942
TatI	WGTACW	2 cut(s)	481, 1065
TauI	GCSGC	1 cut(s)	734
TfiI	GAWTC	2 cut(s)	89, 937
Tru1I	TTAA	1 cut(s)	27
Tru9I	TTAA	1 cut(s)	27
TscAI	CASTG	3 cut(s)	398, 612, 831
TseFI	GTSAC	2 cut(s)	511, 1054
TseI	GCWGC	2 cut(s)	551, 749
Tsp45I	GTSAC	2 cut(s)	511, 1054
TspDTI	ATGAA	4 cut(s)	129, 171, 437, 667
TspGWI	ACGGA	2 cut(s)	485, 830
TspRI	CASTG	3 cut(s)	398, 612, 831
XapI	RAATTY	1 cut(s)	614
XceI	RCATGY	1 cut(s)	488
XmnI	GAANNNNTTC	2 cut(s)	543, 957
XspI	CTAG	1 cut(s)	878

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.