AT3G06960

Protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic-like

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
2194208 .. 2196581
2374 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G06960.1

Sequence Viewer

Length: 1440 bp
ATGAACAGAATGAGATGGGTCGGAGAGGGAGACATCTGGGACCTCGATATGTCAACTCCGGTGACGCTCGAGGGCACCGCACGAGCTGTTCCTGACGATCCTCTTCCTCTAGGTCTCTCTAGAGGCACTCGTCTATCTCGCCCTAAGCAAGTTGAGTTCTTCCACCGCTTCATGGCCTCACCTCTCATCCCTTCCTTCTCCCCTATCCGTCCCAACACCGGAGATGGAGGCGGTGGTGGATTCTCTCTTCAAAGAGTCCTCACTCTTCCTTTCTCCAACAACTGGCTTGTGTCTCTTCTGGGCCAATTCGATGTTCAGAGATTCGTAACGGAGATAGATAAGACTAAAGCTTTTGGTCGAGGGTCTTCGTCTACAGTAGCTTCTCGTTTAAACACAATTGGCAAGCATTTGAAGGATAAATCTTTGTACGCATTGGGTTTTTGTTCTGAGTTTTTGTTATCACCAGATGATACTTTGCTTCTTAGCTATGATGCTTACAAAGGTGATCTCGATAAGAATCCTAGAGCTAAGGCTATCTTCAATCACGAGTTTCCGCTTCACAATCTGACAGCAGAAGCGGTTTGGCCTGGACTTTTTGTGGATAAACATGGTGAATATTGGGATGTGCCACTCTCAATGGCTATTGATCTAGCATCTCTTCCTGCTGAATCTGGTCCAAGTTACCATTTATGTTTACACCATAACAGCGGATCACCCAAGAAGTTACATTCTGATACTATGGAAGTGCCTCCACCGTCACTGCTTCCTGGTTTGTCTCTGAAATCTGCAGTCTCTTATAGGACAAACATGGATCTCTGGAGGGGTACCACTCCAAAGCTCGAAACTTGCAAGCCCTATGATGTCTTCCTCAGTAGTCCTCATGTCGCAGTATCTGGGATTATCGGCTCTGTGATGACCGCAGCATTTGGTGAAAATTCAATCAGATCAAAATTTGAAAATGATTCTGAGGGTGTTGGAGGGTTCTCTCTTCATTTTCCATCTGTAAATTCCGGATTCATGGCTGATGCCTTAGGGCGGGCATCACTCACAGCTCAATATGGAAACTTCCAGAAATTCTTCTTTGATCTCACCCGTTTCCATGCTAGATTAGACTTTCCGCATGGTTTGAGGTTTCTTACCGGTGCCACTAGCGTCGCACAAGATCTTTTAAATTCTCGGCAGCCTAGTTTAGAAGCATTTCAGAAAATCTGCCCTGAAGTATTAGTTTCTCTACAGCAACAGATTGTTGGACCGTTTAGTTTCAAAGTGGAGTCTGGAATTGAGATCGATCTGAGGAACGGAGCTAACCCTGTGACTGTAGATAAGACAGTATTTGCTATTGAATATGCTCTTCAAGTGCTTCTTTCTGCCAAGGCTGTTGTTTCGTACTCCCCAAAACAGAATGAGTTCATGGTTGAGCTTCGTTTCTTTGAGACATAG

Protein Analysis

479

Amino Acids

52.82

Weight (kDa)

6.36

Isoelectric Point (pI)

37.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 824
AccB1I GGYRCC 3 cut(s) 74, 824, 1142
AccB7I CCANNNNNTGG 1 cut(s) 282
AccI GTMKAC 1 cut(s) 371
AccIII TCCGGA 1 cut(s) 1010
AciI CCGC 9 cut(s) 78, 166, 231, 554, 578, 708, 918, 1036, 1118
AclWI GGATC 3 cut(s) 92, 718, 819
AcsI RAATTY 5 cut(s) 934, 950, 1006, 1073, 1171
AcuI CTGAAG 1 cut(s) 1236
AfaI GTAC 3 cut(s) 428, 826, 1388
AfiI CCNNNNNNNGG 4 cut(s) 172, 218, 282, 1035
AgeI ACCGGT 1 cut(s) 1139
AgsI TTSAA 8 cut(s) 251, 412, 541, 939, 956, 1264, 1343, 1355
AjnI CCWGG 2 cut(s) 586, 766
AjuI GAANNNNNNNTTGG 2 cut(s) 297, 329
AluBI AGCT 9 cut(s) 86, 350, 380, 486, 527, 838, 1052, 1304, 1420
AluI AGCT 9 cut(s) 86, 350, 380, 486, 527, 838, 1052, 1304, 1420
Alw26I GTCTC 6 cut(s) 24, 119, 297, 780, 796, 1427
AlwI GGATC 3 cut(s) 92, 718, 819
AlwNI CAGNNNCTG 1 cut(s) 893
Ama87I CYCGRG 1 cut(s) 68
Aor13HI TCCGGA 1 cut(s) 1010
AoxI GGCC 3 cut(s) 174, 301, 584
ApeKI GCWGC 2 cut(s) 920, 1180
ApoI RAATTY 5 cut(s) 934, 950, 1006, 1073, 1171
AsiGI ACCGGT 1 cut(s) 1139
Asp700I GAANNNNTTC 3 cut(s) 1076, 1197, 1406
Asp718I GGTACC 1 cut(s) 824
AspS9I GGNCC 4 cut(s) 40, 301, 674, 1250
AsuHPI GGTGA 8 cut(s) 73, 171, 453, 515, 623, 705, 941, 1081
AvaI CYCGRG 1 cut(s) 68
AvaII GGWCC 3 cut(s) 40, 674, 1250
AxyI CCTNAGG 1 cut(s) 1030
BaeGI GKGCMC 1 cut(s) 77
BanI GGYRCC 3 cut(s) 74, 824, 1142
BauI CACGAG 2 cut(s) 81, 545
BbsI GAAGAC 2 cut(s) 357, 856
BbvI GCAGC 2 cut(s) 932, 1192
BccI CCATC 3 cut(s) 9, 218, 1006
BciT130I CCWGG 2 cut(s) 588, 768
BcoDI GTCTC 6 cut(s) 24, 119, 297, 780, 796, 1427
BfaI CTAG 7 cut(s) 110, 120, 522, 650, 1104, 1149, 1185
BfmI CTRYAG 4 cut(s) 372, 786, 1232, 1317
BglII AGATCT 1 cut(s) 1162
BisI GCNGC 2 cut(s) 921, 1181
BlsI GCNGC 2 cut(s) 922, 1182
Bme1390I CCNGG 2 cut(s) 588, 768
Bme18I GGWCC 3 cut(s) 40, 674, 1250
BmeT110I CYCGRG 1 cut(s) 68
BmgT120I GGNCC 4 cut(s) 40, 301, 674, 1250
BmiI GGNNCC 4 cut(s) 41, 76, 826, 1144
BmrFI CCNGG 2 cut(s) 588, 768
BmsI GCATC 4 cut(s) 481, 662, 1015, 1049
BpiI GAAGAC 2 cut(s) 357, 856
BpmI CTGGAG 1 cut(s) 838
Bpu10I CCTNAGC 2 cut(s) 144, 528
Bsa29I ATCGAT 1 cut(s) 1287
BsaBI GATNNNNATC 1 cut(s) 516
BsaI GGTCTC 1 cut(s) 119
BsaJI CCNNGG 1 cut(s) 1371
BsaWI WCCGGW 4 cut(s) 58, 218, 1010, 1139
Bsc4I CCNNNNNNNGG 4 cut(s) 172, 218, 282, 1035
Bse118I RCCGGY 1 cut(s) 1139
Bse1I ACTGG 1 cut(s) 287
Bse21I CCTNAGG 1 cut(s) 1030
Bse8I GATNNNNATC 1 cut(s) 516
BseAI TCCGGA 1 cut(s) 1010
BseBI CCWGG 2 cut(s) 588, 768
BseCI ATCGAT 1 cut(s) 1287
BseDI CCNNGG 1 cut(s) 1371
BseGI GGATG 2 cut(s) 186, 628
BseJI GATNNNNATC 1 cut(s) 516
BseLI CCNNNNNNNGG 4 cut(s) 172, 218, 282, 1035
BseMII CTCAG 4 cut(s) 438, 883, 957, 1283
BseNI ACTGG 1 cut(s) 287
BseSI GKGCMC 1 cut(s) 77
BseXI GCAGC 2 cut(s) 932, 1192
BshFI GGCC 3 cut(s) 176, 303, 586
BshNI GGYRCC 3 cut(s) 74, 824, 1142
BshTI ACCGGT 1 cut(s) 1139
BshVI ATCGAT 1 cut(s) 1287
BsiHKCI CYCGRG 1 cut(s) 68
BsiSI CCGG 4 cut(s) 59, 219, 1011, 1140
BslFI GGGAC 2 cut(s) 53, 195
BslI CCNNNNNNNGG 4 cut(s) 172, 218, 282, 1035
BsmAI GTCTC 6 cut(s) 24, 119, 297, 780, 796, 1427
BsmFI GGGAC 2 cut(s) 53, 195
BsnI GGCC 3 cut(s) 176, 303, 586
Bso31I GGTCTC 1 cut(s) 119
BsoBI CYCGRG 1 cut(s) 68
Bsp1286I GDGCHC 1 cut(s) 77
Bsp13I TCCGGA 1 cut(s) 1010
BspACI CCGC 9 cut(s) 78, 166, 231, 554, 578, 708, 918, 1036, 1118
BspANI GGCC 3 cut(s) 176, 303, 586
BspCNI CTCAG 4 cut(s) 439, 882, 958, 1284
BspDI ATCGAT 1 cut(s) 1287
BspEI TCCGGA 1 cut(s) 1010
BspLI GGNNCC 4 cut(s) 41, 76, 826, 1144
BspMAI CTGCAG 1 cut(s) 790
BspPI GGATC 3 cut(s) 92, 718, 819
BspQI GCTCTTC 1 cut(s) 1356
BspT107I GGYRCC 3 cut(s) 74, 824, 1142
BspTNI GGTCTC 1 cut(s) 119
BsrFI RCCGGY 1 cut(s) 1139
BsrI ACTGG 1 cut(s) 287
BssAI RCCGGY 1 cut(s) 1139
BssECI CCNNGG 1 cut(s) 1371
BssSI CACGAG 2 cut(s) 81, 545
BssT1I CCWWGG 1 cut(s) 1371
Bst2BI CACGAG 2 cut(s) 81, 545
Bst2UI CCWGG 2 cut(s) 588, 768
Bst4CI ACNGT 5 cut(s) 376, 756, 1254, 1318, 1330
Bst6I CTCTTC 7 cut(s) 108, 252, 270, 300, 663, 993, 1356
BstC8I GCNNGC 3 cut(s) 404, 851, 1038
BstDEI CTNAG 8 cut(s) 144, 447, 482, 528, 869, 966, 1030, 1292
BstF5I GGATG 2 cut(s) 186, 628
BstMAI GTCTC 6 cut(s) 24, 119, 297, 780, 796, 1427
BstNI CCWGG 2 cut(s) 588, 768
BstSCI CCNGG 2 cut(s) 586, 766
BstSFI CTRYAG 4 cut(s) 372, 786, 1232, 1317
BstSLI GKGCMC 1 cut(s) 77
BstV1I GCAGC 2 cut(s) 932, 1192
BstV2I GAAGAC 2 cut(s) 357, 856
BstX2I RGATCY 2 cut(s) 811, 1162
BstYI RGATCY 2 cut(s) 811, 1162
Bsu15I ATCGAT 1 cut(s) 1287
Bsu36I CCTNAGG 1 cut(s) 1030
BsuRI GGCC 3 cut(s) 176, 303, 586
BsuTUI ATCGAT 1 cut(s) 1287
BtsCI GGATG 2 cut(s) 186, 628
BtsI GCAGTG 1 cut(s) 758
BtsIMutI CAGTG 1 cut(s) 758
Cac8I GCNNGC 3 cut(s) 404, 851, 1038
CaiI CAGNNNCTG 1 cut(s) 893
Cfr10I RCCGGY 1 cut(s) 1139
Cfr13I GGNCC 4 cut(s) 40, 301, 674, 1250
ClaI ATCGAT 1 cut(s) 1287
CseI GACGC 2 cut(s) 73, 1141
Csp6I GTAC 3 cut(s) 427, 825, 1387
CspAI ACCGGT 1 cut(s) 1139
CviAII CATG 8 cut(s) 172, 608, 808, 881, 1018, 1100, 1121, 1411
CviQI GTAC 3 cut(s) 427, 825, 1387
DdeI CTNAG 8 cut(s) 144, 447, 482, 528, 869, 966, 1030, 1292
DraI TTTAAA 2 cut(s) 390, 1170
Eam1104I CTCTTC 7 cut(s) 108, 252, 270, 300, 663, 993, 1356
EarI CTCTTC 7 cut(s) 108, 252, 270, 300, 663, 993, 1356
Eco130I CCWWGG 1 cut(s) 1371
Eco31I GGTCTC 1 cut(s) 119
Eco47I GGWCC 3 cut(s) 40, 674, 1250
Eco57I CTGAAG 1 cut(s) 1236
Eco81I CCTNAGG 1 cut(s) 1030
Eco88I CYCGRG 1 cut(s) 68
EcoO109I RGGNCCY 1 cut(s) 40
EcoRII CCWGG 2 cut(s) 586, 766
EcoT14I CCWWGG 1 cut(s) 1371
ErhI CCWWGG 1 cut(s) 1371
FaeI CATG 8 cut(s) 175, 611, 811, 884, 1021, 1103, 1124, 1414
FalI AAGNNNNNCTT 4 cut(s) 521, 553, 1347, 1379
FaqI GGGAC 2 cut(s) 53, 195
FatI CATG 8 cut(s) 171, 607, 807, 880, 1017, 1099, 1120, 1410
FauI CCCGC 1 cut(s) 1029
FblI GTMKAC 1 cut(s) 371
Fnu4HI GCNGC 2 cut(s) 921, 1181
FokI GGATG 2 cut(s) 173, 635
Fsp4HI GCNGC 2 cut(s) 921, 1181
FspBI CTAG 7 cut(s) 110, 120, 522, 650, 1104, 1149, 1185
GluI GCNGC 2 cut(s) 921, 1181
GsuI CTGGAG 1 cut(s) 838
HaeIII GGCC 3 cut(s) 176, 303, 586
HapII CCGG 4 cut(s) 59, 219, 1011, 1140
HgaI GACGC 2 cut(s) 73, 1141
Hin1II CATG 8 cut(s) 175, 611, 811, 884, 1021, 1103, 1124, 1414
HincII GTYRAC 1 cut(s) 54
HindII GTYRAC 1 cut(s) 54
HindIII AAGCTT 1 cut(s) 348
HinfI GANTC 8 cut(s) 240, 255, 321, 517, 668, 962, 1014, 1271
HpaII CCGG 4 cut(s) 59, 219, 1011, 1140
HphI GGTGA 8 cut(s) 73, 171, 453, 515, 623, 705, 941, 1081
Hpy166II GTNNAC 3 cut(s) 54, 372, 695
Hpy188III TCNNGA 8 cut(s) 92, 120, 509, 545, 817, 1011, 1069, 1275
Hpy8I GTNNAC 3 cut(s) 54, 372, 695
Hpy99I CGWCG 1 cut(s) 1157
HpyAV CCTTC 3 cut(s) 201, 205, 406
HpyCH4III ACNGT 5 cut(s) 376, 756, 1254, 1318, 1330
HpyCH4V TGCA 2 cut(s) 788, 849
HpyF3I CTNAG 8 cut(s) 144, 447, 482, 528, 869, 966, 1030, 1292
Hsp92II CATG 8 cut(s) 175, 611, 811, 884, 1021, 1103, 1124, 1414
Kpn2I TCCGGA 1 cut(s) 1010
KpnI GGTACC 1 cut(s) 828
LguI GCTCTTC 1 cut(s) 1356
LmnI GCTCC 1 cut(s) 1301
Lsp1109I GCAGC 2 cut(s) 932, 1192
LweI GCATC 4 cut(s) 481, 662, 1015, 1049
MaeI CTAG 7 cut(s) 110, 120, 522, 650, 1104, 1149, 1185
MaeIII GTNAC 6 cut(s) 61, 325, 680, 723, 756, 1312
MfeI CAATTG 1 cut(s) 396
MflI RGATCY 2 cut(s) 811, 1162
MhlI GDGCHC 1 cut(s) 77
MluCI AATT 8 cut(s) 305, 396, 934, 950, 1006, 1073, 1171, 1278
MlyI GAGTC 2 cut(s) 264, 1280
MmeI TCCRAC 3 cut(s) 300, 955, 1228
MroI TCCGGA 1 cut(s) 1010
MroXI GAANNNNTTC 3 cut(s) 1076, 1197, 1406
MseI TTAA 2 cut(s) 389, 1169
MspA1I CMGCKG 1 cut(s) 708
MspI CCGG 4 cut(s) 59, 219, 1011, 1140
MspR9I CCNGG 2 cut(s) 588, 768
MssI GTTTAAAC 1 cut(s) 390
MunI CAATTG 1 cut(s) 396
MvaI CCWGG 2 cut(s) 588, 768
NlaIII CATG 8 cut(s) 175, 611, 811, 884, 1021, 1103, 1124, 1414
NlaIV GGNNCC 4 cut(s) 41, 76, 826, 1144
NmeAIII GCCGAG 1 cut(s) 1156
NmuCI GTSAC 3 cut(s) 61, 756, 1312
PaeR7I CTCGAG 1 cut(s) 68
PciSI GCTCTTC 1 cut(s) 1356
PdmI GAANNNNTTC 3 cut(s) 1076, 1197, 1406
PfeI GAWTC 6 cut(s) 240, 321, 517, 668, 962, 1014
PflMI CCANNNNNTGG 1 cut(s) 282
PinAI ACCGGT 1 cut(s) 1139
PkrI GCNGC 2 cut(s) 922, 1182
PleI GAGTC 2 cut(s) 263, 1279
PmeI GTTTAAAC 1 cut(s) 390
PpsI GAGTC 2 cut(s) 263, 1279
PpuMI RGGWCCY 1 cut(s) 40
Psp5II RGGWCCY 1 cut(s) 40
Psp6I CCWGG 2 cut(s) 586, 766
PspGI CCWGG 2 cut(s) 586, 766
PspN4I GGNNCC 4 cut(s) 41, 76, 826, 1144
PspPI GGNCC 4 cut(s) 40, 301, 674, 1250
PspPPI RGGWCCY 1 cut(s) 40
PspXI VCTCGAGB 1 cut(s) 68
PstI CTGCAG 1 cut(s) 790
PstNI CAGNNNCTG 1 cut(s) 893
PsuI RGATCY 2 cut(s) 811, 1162
RsaI GTAC 3 cut(s) 428, 826, 1388
RsaNI GTAC 3 cut(s) 427, 825, 1387
SapI GCTCTTC 1 cut(s) 1356
SaqAI TTAA 2 cut(s) 389, 1169
SatI GCNGC 2 cut(s) 921, 1181
Sau96I GGNCC 4 cut(s) 40, 301, 674, 1250
SchI GAGTC 2 cut(s) 264, 1280
ScrFI CCNGG 2 cut(s) 588, 768
SduI GDGCHC 1 cut(s) 77
SfaNI GCATC 4 cut(s) 481, 662, 1015, 1049
SfcI CTRYAG 4 cut(s) 372, 786, 1232, 1317
Sfr274I CTCGAG 1 cut(s) 68
SinI GGWCC 3 cut(s) 40, 674, 1250
SlaI CTCGAG 1 cut(s) 68
SmlI CTYRAG 1 cut(s) 68
SmoI CTYRAG 1 cut(s) 68
Sse9I AATT 8 cut(s) 305, 396, 934, 950, 1006, 1073, 1171, 1278
SsiI CCGC 9 cut(s) 78, 166, 231, 554, 578, 708, 918, 1036, 1118
SspI AATATT 1 cut(s) 617
SspMI CTAG 7 cut(s) 110, 120, 522, 650, 1104, 1149, 1185
StyD4I CCNGG 2 cut(s) 586, 766
StyI CCWWGG 1 cut(s) 1371
TaaI ACNGT 5 cut(s) 376, 756, 1254, 1318, 1330
TaqI TCGA 7 cut(s) 45, 69, 309, 358, 510, 840, 1287
TasI AATT 8 cut(s) 305, 396, 934, 950, 1006, 1073, 1171, 1278
TfiI GAWTC 6 cut(s) 240, 321, 517, 668, 962, 1014
Tru1I TTAA 2 cut(s) 389, 1169
Tru9I TTAA 2 cut(s) 389, 1169
TscAI CASTG 1 cut(s) 765
TseFI GTSAC 3 cut(s) 61, 756, 1312
TseI GCWGC 2 cut(s) 920, 1180
Tsp45I GTSAC 3 cut(s) 61, 756, 1312
TspDTI ATGAA 5 cut(s) 17, 160, 980, 1006, 1399
TspGWI ACGGA 3 cut(s) 197, 344, 1314
TspRI CASTG 1 cut(s) 765
Van91I CCANNNNNTGG 1 cut(s) 282
VpaK11BI GGWCC 3 cut(s) 40, 674, 1250
XapI RAATTY 5 cut(s) 934, 950, 1006, 1073, 1171
XbaI TCTAGA 1 cut(s) 119
XhoI CTCGAG 1 cut(s) 68
XmiI GTMKAC 1 cut(s) 371
XmnI GAANNNNTTC 3 cut(s) 1076, 1197, 1406
XspI CTAG 7 cut(s) 110, 120, 522, 650, 1104, 1149, 1185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.