Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016038.1

Orthogroup ID

OG0009461

Physical Location & Seq

Genomic Coordinates Reverse (-)

1324 .. 2227

Gene Structure 904 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016038.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

atgactgcctgttttggtgagggtgcggctaggtcacaaattgaggatgatgatcctcagggttttagaggctttagtcttcaggctcctgcagtgaaatctgcctttctagcagatgcttttgggtctgcatcattttcagcacagcatggaaacttccaaaggctatttctagatcttactcgttttcatgctcgcctggattttccttctggagctaaatttctgtcgggtgccacacatctagcagaagattatttcaattctcaaaagccaaatttggaagctattcaggatatttgccccaatgccaccctttctcttcagcagcagattgctggacctttcagtttcagggttgattcaagagttgcggttgaactaaggaaccaaaactggagtatacgtgtggatgagcccatatttgccctcgagtatgcactgcaagtccttggttcagctaaagctgttgcttggtattccccaaagcaccaagaagggatgatagagcttcgtttttacgagacataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0006869 GO:0008150 GO:0008289 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0010876 GO:0012505 GO:0016020 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032365 GO:0033036 GO:0034196 GO:0042170 GO:0042802 GO:0042803 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0046983 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070300 GO:0071702 GO:0098588 GO:0098805 GO:1901965 GO:1990052

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3769

Protein Analysis

176

Amino Acids

19.56

Weight (kDa)

5.32

Isoelectric Point (pI)

44.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009461)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06960 AT3G06960
fragaria_vesca	FvH4_4g21580 FvH4_4g21580 FvH4_4g21580
malus_domestica	MD13G1140500.v1.1 MD16G1135300.v1.1
prunus_persica	Prupe.1G104600_v2.0.a1 Prupe.1G104600_v2.0.a1 Prupe.1G104600_v2.0.a1
pyrus_communis	pycom13g12210
rosa_chinensis	RchiOBHm_Chr4g0427691
rosa_laevigata	RLG00000007216
rosa_multiflora	Rmu_co8242681.1_g000001 Rmu_sc0016038.1_g000002
rosa_roxburghii	Rroxscaffold_5G00369320
rosa_rugosa	Rorug04G0219500
rosa_samantha	Rh4AG275700 Rh4BG281700 Rh4CG297200 Rh4DG279100
rosa_wichuraiana	Rw4G023930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	233
AccI	GTMKAC	1 cut(s)	403
AciI	CCGC	2 cut(s)	26, 374
AclWI	GGATC	1 cut(s)	47
AcsI	RAATTY	2 cut(s)	221, 277
AcuI	CTGAAG	2 cut(s)	65, 308
AflIII	ACRYGT	1 cut(s)	406
AgsI	TTSAA	3 cut(s)	262, 366, 380
AjnI	CCWGG	1 cut(s)	198
AjuI	GAANNNNNNNTTGG	2 cut(s)	153, 185
AluBI	AGCT	5 cut(s)	218, 287, 461, 467, 511
AluI	AGCT	5 cut(s)	218, 287, 461, 467, 511
Alw26I	GTCTC	1 cut(s)	518
AlwI	GGATC	1 cut(s)	47
Ama87I	CYCGRG	1 cut(s)	431
ApeKI	GCWGC	1 cut(s)	328
ApoI	RAATTY	2 cut(s)	221, 277
Asp700I	GAANNNNTTC	1 cut(s)	288
AspS9I	GGNCC	1 cut(s)	341
AsuHPI	GGTGA	1 cut(s)	29
AvaI	CYCGRG	1 cut(s)	431
AvaII	GGWCC	1 cut(s)	341
AxyI	CCTNAGG	1 cut(s)	57
BanI	GGYRCC	1 cut(s)	233
BanII	GRGCYC	1 cut(s)	420
BbsI	GAAGAC	1 cut(s)	71
BbvI	GCAGC	1 cut(s)	340
BciT130I	CCWGG	1 cut(s)	200
BcoDI	GTCTC	1 cut(s)	518
BfaI	CTAG	4 cut(s)	30, 110, 173, 245
BfmI	CTRYAG	1 cut(s)	90
BglII	AGATCT	1 cut(s)	175
BisI	GCNGC	2 cut(s)	27, 329
BlsI	GCNGC	2 cut(s)	28, 330
Bme1390I	CCNGG	1 cut(s)	200
Bme18I	GGWCC	1 cut(s)	341
BmeT110I	CYCGRG	1 cut(s)	431
BmgT120I	GGNCC	1 cut(s)	341
BmiI	GGNNCC	3 cut(s)	87, 235, 389
BmrFI	CCNGG	1 cut(s)	200
BmsI	GCATC	2 cut(s)	106, 140
BpiI	GAAGAC	1 cut(s)	71
BpmI	CTGGAG	2 cut(s)	234, 418
BsaAI	YACGTR	1 cut(s)	407
BsaBI	GATNNNNATC	1 cut(s)	51
BsaJI	CCNNGG	1 cut(s)	451
BsaXI	ACNNNNNCTCC	2 cut(s)	391, 421
Bse1I	ACTGG	1 cut(s)	401
Bse21I	CCTNAGG	1 cut(s)	57
Bse8I	GATNNNNATC	1 cut(s)	51
BseBI	CCWGG	1 cut(s)	200
BseDI	CCNNGG	1 cut(s)	451
BseGI	GGATG	3 cut(s)	52, 418, 507
BseJI	GATNNNNATC	1 cut(s)	51
BseMII	CTCAG	1 cut(s)	71
BseNI	ACTGG	1 cut(s)	401
BseXI	GCAGC	1 cut(s)	340
BshNI	GGYRCC	1 cut(s)	233
BsiHKCI	CYCGRG	1 cut(s)	431
BsmAI	GTCTC	1 cut(s)	518
BsoBI	CYCGRG	1 cut(s)	431
Bsp1286I	GDGCHC	1 cut(s)	420
Bsp143I	GATC	2 cut(s)	52, 175
BspACI	CCGC	2 cut(s)	26, 374
BspCNI	CTCAG	1 cut(s)	70
BspLI	GGNNCC	3 cut(s)	87, 235, 389
BspMAI	CTGCAG	1 cut(s)	94
BspPI	GGATC	1 cut(s)	47
BspT107I	GGYRCC	1 cut(s)	233
BsrI	ACTGG	1 cut(s)	401
BssECI	CCNNGG	1 cut(s)	451
BssMI	GATC	2 cut(s)	52, 175
BssNAI	GTATAC	1 cut(s)	404
BssT1I	CCWWGG	1 cut(s)	451
Bst1107I	GTATAC	1 cut(s)	404
Bst2UI	CCWGG	1 cut(s)	200
Bst6I	CTCTTC	1 cut(s)	327
BstBAI	YACGTR	1 cut(s)	407
BstC8I	GCNNGC	1 cut(s)	196
BstDEI	CTNAG	2 cut(s)	57, 383
BstF5I	GGATG	3 cut(s)	52, 418, 507
BstKTI	GATC	2 cut(s)	55, 178
BstMAI	GTCTC	1 cut(s)	518
BstMBI	GATC	2 cut(s)	52, 175
BstMWI	GCNNNNNNNGC	1 cut(s)	110
BstNI	CCWGG	1 cut(s)	200
BstSCI	CCNGG	1 cut(s)	198
BstSFI	CTRYAG	1 cut(s)	90
BstV1I	GCAGC	1 cut(s)	340
BstV2I	GAAGAC	1 cut(s)	71
BstX2I	RGATCY	1 cut(s)	175
BstYI	RGATCY	1 cut(s)	175
BstZ17I	GTATAC	1 cut(s)	404
Bsu36I	CCTNAGG	1 cut(s)	57
BtsCI	GGATG	3 cut(s)	52, 418, 507
BtsI	GCAGTG	2 cut(s)	99, 440
BtsIMutI	CAGTG	2 cut(s)	99, 440
Cac8I	GCNNGC	1 cut(s)	196
Cfr13I	GGNCC	1 cut(s)	341
CviAII	CATG	2 cut(s)	149, 191
DdeI	CTNAG	2 cut(s)	57, 383
DpnI	GATC	2 cut(s)	54, 177
DpnII	GATC	2 cut(s)	52, 175
Eam1104I	CTCTTC	1 cut(s)	327
EarI	CTCTTC	1 cut(s)	327
Eco130I	CCWWGG	1 cut(s)	451
Eco24I	GRGCYC	1 cut(s)	420
Eco47I	GGWCC	1 cut(s)	341
Eco57I	CTGAAG	2 cut(s)	65, 308
Eco81I	CCTNAGG	1 cut(s)	57
Eco88I	CYCGRG	1 cut(s)	431
EcoRII	CCWGG	1 cut(s)	198
EcoT14I	CCWWGG	1 cut(s)	451
EcoT38I	GRGCYC	1 cut(s)	420
ErhI	CCWWGG	1 cut(s)	451
FaeI	CATG	2 cut(s)	152, 194
FaiI	YATR	6 cut(s)	150, 192, 404, 422, 438, 529
FatI	CATG	2 cut(s)	148, 190
FblI	GTMKAC	1 cut(s)	403
Fnu4HI	GCNGC	2 cut(s)	27, 329
FokI	GGATG	3 cut(s)	59, 425, 514
FriOI	GRGCYC	1 cut(s)	420
Fsp4HI	GCNGC	2 cut(s)	27, 329
FspBI	CTAG	4 cut(s)	30, 110, 173, 245
GluI	GCNGC	2 cut(s)	27, 329
GsuI	CTGGAG	2 cut(s)	234, 418
Hin1II	CATG	2 cut(s)	152, 194
HinfI	GANTC	1 cut(s)	362
HphI	GGTGA	1 cut(s)	29
Hpy166II	GTNNAC	1 cut(s)	404
Hpy188III	TCNNGA	4 cut(s)	173, 213, 293, 366
Hpy8I	GTNNAC	1 cut(s)	404
HpyAV	CCTTC	2 cut(s)	219, 491
HpyCH4IV	ACGT	1 cut(s)	406
HpyCH4V	TGCA	4 cut(s)	92, 131, 440, 445
HpyF10VI	GCNNNNNNNGC	1 cut(s)	110
HpyF3I	CTNAG	2 cut(s)	57, 383
HpySE526I	ACGT	1 cut(s)	406
Hsp92II	CATG	2 cut(s)	152, 194
Kzo9I	GATC	2 cut(s)	52, 175
LmnI	GCTCC	2 cut(s)	91, 215
Lsp1109I	GCAGC	1 cut(s)	340
LweI	GCATC	2 cut(s)	106, 140
MaeI	CTAG	4 cut(s)	30, 110, 173, 245
MaeII	ACGT	1 cut(s)	406
MaeIII	GTNAC	1 cut(s)	33
MalI	GATC	2 cut(s)	54, 177
MboI	GATC	2 cut(s)	52, 175
MboII	GAAGA	3 cut(s)	71, 263, 314
MflI	RGATCY	1 cut(s)	175
MhlI	GDGCHC	1 cut(s)	420
MluCI	AATT	4 cut(s)	39, 221, 262, 277
MnlI	CCTC	5 cut(s)	13, 37, 62, 66, 440
MroXI	GAANNNNTTC	1 cut(s)	288
MspR9I	CCNGG	1 cut(s)	200
MvaI	CCWGG	1 cut(s)	200
MwoI	GCNNNNNNNGC	1 cut(s)	110
NdeII	GATC	2 cut(s)	52, 175
NlaIII	CATG	2 cut(s)	152, 194
NlaIV	GGNNCC	3 cut(s)	87, 235, 389
NmuCI	GTSAC	1 cut(s)	33
PaeR7I	CTCGAG	1 cut(s)	431
PdmI	GAANNNNTTC	1 cut(s)	288
PfeI	GAWTC	1 cut(s)	362
PkrI	GCNGC	2 cut(s)	28, 330
Ppu21I	YACGTR	1 cut(s)	407
Psp6I	CCWGG	1 cut(s)	198
PspGI	CCWGG	1 cut(s)	198
PspN4I	GGNNCC	3 cut(s)	87, 235, 389
PspPI	GGNCC	1 cut(s)	341
PspXI	VCTCGAGB	1 cut(s)	431
PstI	CTGCAG	1 cut(s)	94
PsuI	RGATCY	1 cut(s)	175
SatI	GCNGC	2 cut(s)	27, 329
Sau3AI	GATC	2 cut(s)	52, 175
Sau96I	GGNCC	1 cut(s)	341
ScrFI	CCNGG	1 cut(s)	200
SduI	GDGCHC	1 cut(s)	420
SetI	ASST	8 cut(s)	35, 220, 289, 346, 409, 463, 469, 513
SfaNI	GCATC	2 cut(s)	106, 140
SfcI	CTRYAG	1 cut(s)	90
Sfr274I	CTCGAG	1 cut(s)	431
SinI	GGWCC	1 cut(s)	341
SlaI	CTCGAG	1 cut(s)	431
SmlI	CTYRAG	1 cut(s)	431
SmoI	CTYRAG	1 cut(s)	431
Sse9I	AATT	4 cut(s)	39, 221, 262, 277
SsiI	CCGC	2 cut(s)	26, 374
SspMI	CTAG	4 cut(s)	30, 110, 173, 245
StyD4I	CCNGG	1 cut(s)	198
StyI	CCWWGG	1 cut(s)	451
TaiI	ACGT	1 cut(s)	409
TaqI	TCGA	1 cut(s)	432
TasI	AATT	4 cut(s)	39, 221, 262, 277
TauI	GCSGC	1 cut(s)	29
TfiI	GAWTC	1 cut(s)	362
TscAI	CASTG	2 cut(s)	99, 447
TseFI	GTSAC	1 cut(s)	33
TseI	GCWGC	1 cut(s)	328
Tsp45I	GTSAC	1 cut(s)	33
TspDTI	ATGAA	1 cut(s)	179
TspRI	CASTG	2 cut(s)	99, 447
VpaK11BI	GGWCC	1 cut(s)	341
XapI	RAATTY	2 cut(s)	221, 277
XbaI	TCTAGA	1 cut(s)	172
XhoI	CTCGAG	1 cut(s)	431
XmiI	GTMKAC	1 cut(s)	403
XmnI	GAANNNNTTC	1 cut(s)	288
XspI	CTAG	4 cut(s)	30, 110, 173, 245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.