RLG00000007216

Protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Forward (+)
14663639 .. 14666119
2481 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007216

Sequence Viewer

Length: 1410 bp
ATGGAGATGAAGAAGCTGAGATGGGCAATGGACGGAGCCTTCTGGGACCTGGACATCTCGACGCCGAGGACCCTCGACGGCCTGGGCCGCCCCGTTCCCGGAGACCCACTTCCTCTGGGCCTTTCTCGAGGCGCGAGGCTCTCCCGGCCCAAACAAATTGACTTCATGCAGCGTTTCATGTTTGCCCCCGTCGTCCCTTCCTACGCCGCCGCCGCCAATGGCTTCACTCTCCAGCGTGTCCTTACCATCCCCTTCGCCGATAACTGGCTTGGGACTTTTCTGGGTCAGTTCAATGTGGAGAGGTTTTTATCCTCTGTGAAAAACAGTGAGGGCCCACCACCGGACTCTGCTTCTTCATGGGTGAAAACCCTGGGAAAGCACTTGCAGGACAAATCCTTGTATGCCCTTTCGTTCTGTTCTGACTTGCTGTTGACACCTGATGACACATTGCTTTTGAGTGTGGAGGGTTATGGTGATGATAAGAAGCCTCGAAATAAAGCACTGTTTCAGCACAGGTTTCCTCATCACAATTTGTCAGTAGAGGCAGTTTGGCCAGGGCTTTTTGTGGATAAGGCTGGTGATTATTGGGATGTGCCATTGTCAATGTCGGTTGATCTGGCTACGGTTGCTTCGGATTCTGGTGCCAGTTATCGTGTGTGCGTGCATCATAACTCGGGGGCACCCGAGCGCCTTGATGGTGGTCAGAGTGAAGGAATACCTGCTGGTTTGCTTCCTGGTTTGGCTGTCAAGGGTGCTATTTCCTATAGGAAGAATATTGACCTTTGGAGAAGTAATGCTTCGAAGCTGAAAATGGTGCAGCCCTTTGATATATTCCTTTCGAATCCTCATGTTTCGGCTTCAGGGATTATTGGTGCTGCTATGACTTCCTGTTTTGGTGAGGGTGCGGCTAGGTCACAAATTGAGGATGATGATCCTCAGGGTTTTAGAGGCTTTAGTCTTCAGGCTCCTGCAGTAAAATCTGCCTTTCTAGCAGATGTTTTTGGGTCTGCATCATTTTCAGCACAGCATGGAAACTTCCAAAGGCTATTTCTAGATCTTACTCGTTTTCATGTTCGCCTGGATTTTCCTTCTGGAGCTAAATTTCTGTCGGGTGCCACACATCTAGCAGAAGATTATTTCAATTCTCAAAAGCCAAATTTGGAAGCTATTCAGGATATTTGCCCCAATGCCACCCTTTCTCTTCAGCAGCAGCTTGCTGGACCTTTCAGTTTCAGGGTTGATTCAAGAGTTGCAGTTGAACTAAGGAACCAAAACTGGAGTATACGTGTGGATGAGCCCGTATTTGCCCTCGAGTATGCACTGCAAGTCCTTGGTTCAGCTAAAGCTGTTGCTTGGTATTCCCCAAAGCACCAAGAAGGGATGATAGAGCTTCGTTTTTACGAGACATAA

Protein Analysis

470

Amino Acids

51.61

Weight (kDa)

6.27

Isoelectric Point (pI)

38.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 727
AccB1I GGYRCC 3 cut(s) 641, 679, 1112
AccI GTMKAC 1 cut(s) 1282
AccII CGCG 1 cut(s) 134
AciI CCGC 5 cut(s) 88, 207, 210, 213, 905
AclWI GGATC 1 cut(s) 926
AcoI YGGCCR 1 cut(s) 551
AcsI RAATTY 2 cut(s) 1100, 1156
AcuI CTGAAG 3 cut(s) 843, 944, 1187
AcyI GRCGYC 1 cut(s) 62
AfiI CCNNNNNNNGG 3 cut(s) 98, 264, 340
AflIII ACRYGT 1 cut(s) 1285
AgsI TTSAA 4 cut(s) 292, 1141, 1245, 1259
AjnI CCWGG 6 cut(s) 48, 81, 369, 553, 733, 1077
AjuI GAANNNNNNNTTGG 2 cut(s) 1032, 1064
AluBI AGCT 8 cut(s) 16, 805, 1097, 1166, 1213, 1340, 1346, 1390
AluI AGCT 8 cut(s) 16, 805, 1097, 1166, 1213, 1340, 1346, 1390
Alw26I GTCTC 2 cut(s) 96, 1397
AlwI GGATC 1 cut(s) 926
Ama87I CYCGRG 4 cut(s) 126, 673, 683, 1310
AoxI GGCC 6 cut(s) 79, 85, 118, 146, 331, 551
ApaI GGGCCC 1 cut(s) 335
ApeKI GCWGC 5 cut(s) 169, 817, 875, 1207, 1210
ApoI RAATTY 2 cut(s) 1100, 1156
Asp700I GAANNNNTTC 1 cut(s) 1167
AspLEI GCGC 2 cut(s) 134, 690
AspS9I GGNCC 8 cut(s) 46, 69, 85, 118, 147, 331, 332, 1220
AsuC2I CCSGG 2 cut(s) 99, 145
AsuHPI GGTGA 4 cut(s) 373, 485, 590, 908
AsuII TTCGAA 2 cut(s) 800, 839
AvaI CYCGRG 4 cut(s) 126, 673, 683, 1310
AvaII GGWCC 3 cut(s) 46, 69, 1220
AxyI CCTNAGG 1 cut(s) 936
BaeGI GKGCMC 2 cut(s) 335, 682
BalI TGGCCA 1 cut(s) 553
BanI GGYRCC 3 cut(s) 641, 679, 1112
BanII GRGCYC 2 cut(s) 335, 1299
BbsI GAAGAC 1 cut(s) 950
BbvI GCAGC 5 cut(s) 181, 829, 862, 1219, 1222
BccI CCATC 3 cut(s) 15, 254, 689
BceAI ACGGC 1 cut(s) 94
BciT130I CCWGG 6 cut(s) 50, 83, 371, 555, 735, 1079
BcnI CCSGG 2 cut(s) 99, 145
BcoDI GTCTC 2 cut(s) 96, 1397
BfaI CTAG 4 cut(s) 909, 989, 1052, 1124
BfmI CTRYAG 2 cut(s) 763, 969
BfoI RGCGCY 1 cut(s) 691
BfuAI ACCTGC 1 cut(s) 727
BglII AGATCT 1 cut(s) 1054
Bme1390I CCNGG 8 cut(s) 50, 83, 99, 145, 371, 555, 735, 1079
Bme18I GGWCC 3 cut(s) 46, 69, 1220
BmeT110I CYCGRG 4 cut(s) 126, 673, 683, 1310
BmgT120I GGNCC 8 cut(s) 46, 69, 85, 118, 147, 331, 332, 1220
BmiI GGNNCC 9 cut(s) 37, 47, 71, 333, 643, 681, 966, 1114, 1268
BmrFI CCNGG 8 cut(s) 50, 83, 99, 145, 371, 555, 735, 1079
BmsI GCATC 2 cut(s) 673, 1019
BpiI GAAGAC 1 cut(s) 950
BpmI CTGGAG 3 cut(s) 215, 1113, 1297
Bpu14I TTCGAA 2 cut(s) 800, 839
BpuMI CCSGG 2 cut(s) 99, 145
BsaAI YACGTR 1 cut(s) 1286
BsaBI GATNNNNATC 1 cut(s) 930
BsaHI GRCGYC 1 cut(s) 62
BsaI GGTCTC 1 cut(s) 96
BsaJI CCNNGG 6 cut(s) 65, 82, 369, 370, 554, 1330
BsaWI WCCGGW 1 cut(s) 340
BsaXI ACNNNNNCTCC 2 cut(s) 1270, 1300
Bsc4I CCNNNNNNNGG 3 cut(s) 98, 264, 340
Bse1I ACTGG 3 cut(s) 269, 645, 1280
Bse21I CCTNAGG 1 cut(s) 936
Bse3DI GCAATG 2 cut(s) 33, 446
Bse8I GATNNNNATC 1 cut(s) 930
BseBI CCWGG 6 cut(s) 50, 83, 371, 555, 735, 1079
BseDI CCNNGG 6 cut(s) 65, 82, 369, 370, 554, 1330
BseGI GGATG 5 cut(s) 246, 595, 931, 1297, 1386
BseJI GATNNNNATC 1 cut(s) 930
BseLI CCNNNNNNNGG 3 cut(s) 98, 264, 340
BseMI GCAATG 2 cut(s) 33, 446
BseMII CTCAG 2 cut(s) 8, 950
BseNI ACTGG 3 cut(s) 269, 645, 1280
BseSI GKGCMC 2 cut(s) 335, 682
BseXI GCAGC 5 cut(s) 181, 829, 862, 1219, 1222
BsgI GTGCAG 1 cut(s) 836
Bsh1236I CGCG 1 cut(s) 134
BshFI GGCC 6 cut(s) 81, 87, 120, 148, 333, 553
BshNI GGYRCC 3 cut(s) 641, 679, 1112
BsiHKCI CYCGRG 4 cut(s) 126, 673, 683, 1310
BsiSI CCGG 3 cut(s) 99, 145, 341
BslFI GGGAC 3 cut(s) 59, 179, 286
BslI CCNNNNNNNGG 3 cut(s) 98, 264, 340
BsmAI GTCTC 2 cut(s) 96, 1397
BsmFI GGGAC 3 cut(s) 59, 179, 286
BsnI GGCC 6 cut(s) 81, 87, 120, 148, 333, 553
Bso31I GGTCTC 1 cut(s) 96
BsoBI CYCGRG 4 cut(s) 126, 673, 683, 1310
Bsp119I TTCGAA 2 cut(s) 800, 839
Bsp120I GGGCCC 1 cut(s) 331
Bsp1286I GDGCHC 3 cut(s) 335, 682, 1299
Bsp143I GATC 3 cut(s) 613, 931, 1054
BspACI CCGC 5 cut(s) 88, 207, 210, 213, 905
BspANI GGCC 6 cut(s) 81, 87, 120, 148, 333, 553
BspCNI CTCAG 2 cut(s) 9, 949
BspFNI CGCG 1 cut(s) 134
BspLI GGNNCC 9 cut(s) 37, 47, 71, 333, 643, 681, 966, 1114, 1268
BspMAI CTGCAG 1 cut(s) 973
BspMI ACCTGC 1 cut(s) 727
BspPI GGATC 1 cut(s) 926
BspT104I TTCGAA 2 cut(s) 800, 839
BspT107I GGYRCC 3 cut(s) 641, 679, 1112
BspTNI GGTCTC 1 cut(s) 96
BsrDI GCAATG 2 cut(s) 33, 446
BsrI ACTGG 3 cut(s) 269, 645, 1280
BssECI CCNNGG 6 cut(s) 65, 82, 369, 370, 554, 1330
BssMI GATC 3 cut(s) 613, 931, 1054
BssNAI GTATAC 1 cut(s) 1283
BssNI GRCGYC 1 cut(s) 62
BssT1I CCWWGG 1 cut(s) 1330
Bst1107I GTATAC 1 cut(s) 1283
Bst2UI CCWGG 6 cut(s) 50, 83, 371, 555, 735, 1079
Bst4CI ACNGT 3 cut(s) 326, 504, 625
Bst6I CTCTTC 1 cut(s) 1206
BstACI GRCGYC 1 cut(s) 62
BstBAI YACGTR 1 cut(s) 1286
BstBI TTCGAA 2 cut(s) 800, 839
BstC8I GCNNGC 2 cut(s) 662, 1215
BstDEI CTNAG 3 cut(s) 17, 936, 1262
BstF5I GGATG 5 cut(s) 246, 595, 931, 1297, 1386
BstFNI CGCG 1 cut(s) 134
BstH2I RGCGCY 1 cut(s) 691
BstHHI GCGC 2 cut(s) 134, 690
BstKTI GATC 3 cut(s) 616, 934, 1057
BstMAI GTCTC 2 cut(s) 96, 1397
BstMBI GATC 3 cut(s) 613, 931, 1054
BstMWI GCNNNNNNNGC 5 cut(s) 87, 145, 212, 626, 989
BstNI CCWGG 6 cut(s) 50, 83, 371, 555, 735, 1079
BstSCI CCNGG 8 cut(s) 48, 81, 97, 143, 369, 553, 733, 1077
BstSFI CTRYAG 2 cut(s) 763, 969
BstSLI GKGCMC 2 cut(s) 335, 682
BstUI CGCG 1 cut(s) 134
BstV1I GCAGC 5 cut(s) 181, 829, 862, 1219, 1222
BstV2I GAAGAC 1 cut(s) 950
BstX2I RGATCY 1 cut(s) 1054
BstYI RGATCY 1 cut(s) 1054
BstZ17I GTATAC 1 cut(s) 1283
Bsu36I CCTNAGG 1 cut(s) 936
BsuRI GGCC 6 cut(s) 81, 87, 120, 148, 333, 553
BtsCI GGATG 5 cut(s) 246, 595, 931, 1297, 1386
BtsI GCAGTG 1 cut(s) 1319
BtsIMutI CAGTG 3 cut(s) 331, 500, 1319
BveI ACCTGC 1 cut(s) 727
Cac8I GCNNGC 2 cut(s) 662, 1215
CfoI GCGC 2 cut(s) 134, 690
Cfr13I GGNCC 8 cut(s) 46, 69, 85, 118, 147, 331, 332, 1220
CseI GACGC 1 cut(s) 70
CviAII CATG 6 cut(s) 166, 178, 357, 848, 1028, 1070
DdeI CTNAG 3 cut(s) 17, 936, 1262
DpnI GATC 3 cut(s) 615, 933, 1056
DpnII GATC 3 cut(s) 613, 931, 1054
EaeI YGGCCR 1 cut(s) 551
Eam1104I CTCTTC 1 cut(s) 1206
EarI CTCTTC 1 cut(s) 1206
Eco130I CCWWGG 1 cut(s) 1330
Eco24I GRGCYC 2 cut(s) 335, 1299
Eco31I GGTCTC 1 cut(s) 96
Eco47I GGWCC 3 cut(s) 46, 69, 1220
Eco57I CTGAAG 3 cut(s) 843, 944, 1187
Eco81I CCTNAGG 1 cut(s) 936
Eco88I CYCGRG 4 cut(s) 126, 673, 683, 1310
EcoO109I RGGNCCY 3 cut(s) 46, 69, 331
EcoRII CCWGG 6 cut(s) 48, 81, 369, 553, 733, 1077
EcoT14I CCWWGG 1 cut(s) 1330
EcoT38I GRGCYC 2 cut(s) 335, 1299
ErhI CCWWGG 1 cut(s) 1330
FaeI CATG 6 cut(s) 169, 181, 360, 851, 1031, 1073
FalI AAGNNNNNCTT 2 cut(s) 781, 813
FaqI GGGAC 3 cut(s) 59, 179, 286
FatI CATG 6 cut(s) 165, 177, 356, 847, 1027, 1069
FblI GTMKAC 1 cut(s) 1282
FokI GGATG 5 cut(s) 233, 602, 938, 1304, 1393
FriOI GRGCYC 2 cut(s) 335, 1299
FspBI CTAG 4 cut(s) 909, 989, 1052, 1124
GlaI GCGC 2 cut(s) 133, 689
GsuI CTGGAG 3 cut(s) 215, 1113, 1297
HaeII RGCGCY 1 cut(s) 691
HaeIII GGCC 6 cut(s) 81, 87, 120, 148, 333, 553
HapII CCGG 3 cut(s) 99, 145, 341
HgaI GACGC 1 cut(s) 70
HhaI GCGC 2 cut(s) 134, 690
Hin1I GRCGYC 1 cut(s) 62
Hin1II CATG 6 cut(s) 169, 181, 360, 851, 1031, 1073
Hin6I GCGC 2 cut(s) 132, 688
HinP1I GCGC 2 cut(s) 132, 688
HincII GTYRAC 1 cut(s) 432
HindII GTYRAC 1 cut(s) 432
HinfI GANTC 4 cut(s) 344, 635, 841, 1241
HpaII CCGG 3 cut(s) 99, 145, 341
HphI GGTGA 4 cut(s) 373, 485, 590, 908
Hpy166II GTNNAC 2 cut(s) 432, 1283
Hpy188I TCNGA 3 cut(s) 421, 634, 705
Hpy188III TCNNGA 6 cut(s) 58, 126, 1052, 1092, 1172, 1245
Hpy8I GTNNAC 2 cut(s) 432, 1283
Hpy99I CGWCG 3 cut(s) 64, 80, 194
HpyAV CCTTC 6 cut(s) 49, 207, 262, 704, 1098, 1370
HpyCH4III ACNGT 3 cut(s) 326, 504, 625
HpyCH4IV ACGT 1 cut(s) 1285
HpyCH4V TGCA 9 cut(s) 169, 385, 664, 817, 971, 1010, 1253, 1319, 1324
HpyF10VI GCNNNNNNNGC 5 cut(s) 87, 145, 212, 626, 989
HpyF3I CTNAG 3 cut(s) 17, 936, 1262
HpySE526I ACGT 1 cut(s) 1285
Hsp92I GRCGYC 1 cut(s) 62
Hsp92II CATG 6 cut(s) 169, 181, 360, 851, 1031, 1073
HspAI GCGC 2 cut(s) 132, 688
Kzo9I GATC 3 cut(s) 613, 931, 1054
LmnI GCTCC 3 cut(s) 35, 970, 1094
Lsp1109I GCAGC 5 cut(s) 181, 829, 862, 1219, 1222
LweI GCATC 2 cut(s) 673, 1019
MaeI CTAG 4 cut(s) 909, 989, 1052, 1124
MaeII ACGT 1 cut(s) 1285
MaeIII GTNAC 1 cut(s) 912
MalI GATC 3 cut(s) 615, 933, 1056
MboI GATC 3 cut(s) 613, 931, 1054
MboII GAAGA 6 cut(s) 22, 345, 781, 950, 1142, 1193
MflI RGATCY 1 cut(s) 1054
MhlI GDGCHC 3 cut(s) 335, 682, 1299
MlsI TGGCCA 1 cut(s) 553
MluCI AATT 6 cut(s) 156, 529, 918, 1100, 1141, 1156
MluNI TGGCCA 1 cut(s) 553
MlyI GAGTC 1 cut(s) 338
Mox20I TGGCCA 1 cut(s) 553
MroXI GAANNNNTTC 1 cut(s) 1167
MscI TGGCCA 1 cut(s) 553
Msp20I TGGCCA 1 cut(s) 553
MspI CCGG 3 cut(s) 99, 145, 341
MspR9I CCNGG 8 cut(s) 50, 83, 99, 145, 371, 555, 735, 1079
MvaI CCWGG 6 cut(s) 50, 83, 371, 555, 735, 1079
MvnI CGCG 1 cut(s) 134
MwoI GCNNNNNNNGC 5 cut(s) 87, 145, 212, 626, 989
NciI CCSGG 2 cut(s) 99, 145
NdeII GATC 3 cut(s) 613, 931, 1054
NlaIII CATG 6 cut(s) 169, 181, 360, 851, 1031, 1073
NlaIV GGNNCC 9 cut(s) 37, 47, 71, 333, 643, 681, 966, 1114, 1268
NmeAIII GCCGAG 1 cut(s) 90
NmuCI GTSAC 1 cut(s) 912
NspV TTCGAA 2 cut(s) 800, 839
PaeR7I CTCGAG 2 cut(s) 126, 1310
PasI CCCWGGG 1 cut(s) 370
PdmI GAANNNNTTC 1 cut(s) 1167
PfeI GAWTC 3 cut(s) 635, 841, 1241
PfoI TCCNGGA 1 cut(s) 97
PleI GAGTC 1 cut(s) 338
PpsI GAGTC 1 cut(s) 338
Ppu21I YACGTR 1 cut(s) 1286
PpuMI RGGWCCY 2 cut(s) 46, 69
Psp5II RGGWCCY 2 cut(s) 46, 69
Psp6I CCWGG 6 cut(s) 48, 81, 369, 553, 733, 1077
PspGI CCWGG 6 cut(s) 48, 81, 369, 553, 733, 1077
PspN4I GGNNCC 9 cut(s) 37, 47, 71, 333, 643, 681, 966, 1114, 1268
PspOMI GGGCCC 1 cut(s) 331
PspPI GGNCC 8 cut(s) 46, 69, 85, 118, 147, 331, 332, 1220
PspPPI RGGWCCY 2 cut(s) 46, 69
PspXI VCTCGAGB 1 cut(s) 1310
PstI CTGCAG 1 cut(s) 973
PsuI RGATCY 1 cut(s) 1054
Sau3AI GATC 3 cut(s) 613, 931, 1054
Sau96I GGNCC 8 cut(s) 46, 69, 85, 118, 147, 331, 332, 1220
SchI GAGTC 1 cut(s) 338
ScrFI CCNGG 8 cut(s) 50, 83, 99, 145, 371, 555, 735, 1079
SduI GDGCHC 3 cut(s) 335, 682, 1299
SfaNI GCATC 2 cut(s) 673, 1019
SfcI CTRYAG 2 cut(s) 763, 969
Sfr274I CTCGAG 2 cut(s) 126, 1310
SfuI TTCGAA 2 cut(s) 800, 839
SinI GGWCC 3 cut(s) 46, 69, 1220
SlaI CTCGAG 2 cut(s) 126, 1310
SmlI CTYRAG 2 cut(s) 126, 1310
SmoI CTYRAG 2 cut(s) 126, 1310
Sse9I AATT 6 cut(s) 156, 529, 918, 1100, 1141, 1156
SsiI CCGC 5 cut(s) 88, 207, 210, 213, 905
SspI AATATT 1 cut(s) 775
SspMI CTAG 4 cut(s) 909, 989, 1052, 1124
StyD4I CCNGG 8 cut(s) 48, 81, 97, 143, 369, 553, 733, 1077
StyI CCWWGG 1 cut(s) 1330
TaaI ACNGT 3 cut(s) 326, 504, 625
TaiI ACGT 1 cut(s) 1288
TaqI TCGA 7 cut(s) 59, 75, 127, 490, 800, 839, 1311
TasI AATT 6 cut(s) 156, 529, 918, 1100, 1141, 1156
TauI GCSGC 5 cut(s) 90, 209, 212, 215, 908
TfiI GAWTC 3 cut(s) 635, 841, 1241
TscAI CASTG 3 cut(s) 331, 507, 1326
TseFI GTSAC 1 cut(s) 912
TseI GCWGC 5 cut(s) 169, 817, 875, 1207, 1210
Tsp45I GTSAC 1 cut(s) 912
TspDTI ATGAA 5 cut(s) 23, 154, 166, 345, 1058
TspGWI ACGGA 1 cut(s) 48
TspRI CASTG 3 cut(s) 331, 507, 1326
VpaK11BI GGWCC 3 cut(s) 46, 69, 1220
XapI RAATTY 2 cut(s) 1100, 1156
XbaI TCTAGA 1 cut(s) 1051
XhoI CTCGAG 2 cut(s) 126, 1310
XmiI GTMKAC 1 cut(s) 1282
XmnI GAANNNNTTC 1 cut(s) 1167
XspI CTAG 4 cut(s) 909, 989, 1052, 1124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.