Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0009461

Physical Location & Seq

Genomic Coordinates Reverse (-)

37856953 .. 37857278

Gene Structure 326 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0219500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

ATGGTGGCTGTGAAGAAAACCAAGAAGACCCATGAGTCTATCAACAACAGGCTCGCTCTCGTCATGAAGAGTGGCAAATACACTTTGGGCTACAAGACCGTCATCAACACTCTTCGTAGCTTGAAAGGTTGTATCTTTGATTCTTTGACCCAAATTTTCAATGTTTCTCATTTCTGCGATTTGGGTTTCAAATCTTCGATGTGGGATTTGATTTTGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0006869 GO:0008150 GO:0008289 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0010876 GO:0012505 GO:0016020 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032365 GO:0033036 GO:0034196 GO:0042170 GO:0042802 GO:0042803 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0046983 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070300 GO:0071702 GO:0098588 GO:0098805 GO:1901965 GO:1990052

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3769

Protein Analysis

73

Amino Acids

8.32

Weight (kDa)

9.8

Isoelectric Point (pI)

21.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009461)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06960 AT3G06960
fragaria_vesca	FvH4_4g21580 FvH4_4g21580 FvH4_4g21580
malus_domestica	MD13G1140500.v1.1 MD16G1135300.v1.1
prunus_persica	Prupe.1G104600_v2.0.a1 Prupe.1G104600_v2.0.a1 Prupe.1G104600_v2.0.a1
pyrus_communis	pycom13g12210
rosa_chinensis	RchiOBHm_Chr4g0427691
rosa_laevigata	RLG00000007216
rosa_multiflora	Rmu_co8242681.1_g000001 Rmu_sc0016038.1_g000002
rosa_roxburghii	Rroxscaffold_5G00369320
rosa_rugosa	Rorug04G0219500
rosa_samantha	Rh4AG275700 Rh4BG281700 Rh4CG297200 Rh4DG279100
rosa_wichuraiana	Rw4G023930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	34
AcsI	RAATTY	1 cut(s)	153
AgsI	TTSAA	3 cut(s)	124, 160, 190
AluBI	AGCT	1 cut(s)	120
AluI	AGCT	1 cut(s)	120
ApoI	RAATTY	1 cut(s)	153
BbsI	GAAGAC	1 cut(s)	32
BpiI	GAAGAC	1 cut(s)	32
BspHI	TCATGA	1 cut(s)	63
Bst4CI	ACNGT	1 cut(s)	100
Bst6I	CTCTTC	2 cut(s)	62, 117
BstC8I	GCNNGC	1 cut(s)	54
BstV2I	GAAGAC	1 cut(s)	32
Cac8I	GCNNGC	1 cut(s)	54
CciI	TCATGA	1 cut(s)	63
CviAII	CATG	2 cut(s)	32, 64
CviJI	RGCY	4 cut(s)	8, 52, 90, 120
CviKI_1	RGCY	4 cut(s)	8, 52, 90, 120
DrdI	GACNNNNNNGTC	1 cut(s)	34
DseDI	GACNNNNNNGTC	1 cut(s)	34
Eam1104I	CTCTTC	2 cut(s)	62, 117
EarI	CTCTTC	2 cut(s)	62, 117
FaeI	CATG	2 cut(s)	35, 67
FaiI	YATR	2 cut(s)	33, 65
FatI	CATG	2 cut(s)	31, 63
Hin1II	CATG	2 cut(s)	35, 67
HinfI	GANTC	2 cut(s)	35, 140
Hpy188III	TCNNGA	1 cut(s)	64
HpyCH4III	ACNGT	1 cut(s)	100
Hsp92II	CATG	2 cut(s)	35, 67
LpnPI	CCDG	1 cut(s)	34
MboII	GAAGA	5 cut(s)	25, 37, 79, 104, 186
MluCI	AATT	1 cut(s)	153
MlyI	GAGTC	1 cut(s)	44
NlaIII	CATG	2 cut(s)	35, 67
PagI	TCATGA	1 cut(s)	63
PfeI	GAWTC	1 cut(s)	140
PleI	GAGTC	1 cut(s)	43
PpsI	GAGTC	1 cut(s)	43
SchI	GAGTC	1 cut(s)	44
SetI	ASST	2 cut(s)	122, 130
SgeI	CNNG	8 cut(s)	34, 44, 61, 65, 71, 76, 106, 133
Sse9I	AATT	1 cut(s)	153
TaaI	ACNGT	1 cut(s)	100
TaqI	TCGA	1 cut(s)	197
TasI	AATT	1 cut(s)	153
TfiI	GAWTC	1 cut(s)	140
TspDTI	ATGAA	1 cut(s)	80
XapI	RAATTY	1 cut(s)	153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.