MD16G1135300.v1.1

Protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Forward (+)
10387480 .. 10388927
1448 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1135300.v1.1.491

Sequence Viewer

Length: 906 bp
ATGGAGATGAAGAAGCTGAGATGGGCAATGGACGGCAGCTTCTGGGACCTCGACATGTCGACACCGAGGACCCTCGACGGACTGGTCCGGCCGGTTCCCGGCGATCCACTTCCTCTGGGCCTCACCCGTGGCGCCAAGCTCTCCAGGCCCAACCAAATCGACTTCATGCAGCGGTTCATGCCCTCCCCCTTGGTCCCTTCCTACGCCCCCGCCAACGGCTTCACTCTCCAGCGAGTCCTCACCCTACCCATTGGCGACAATTGGTTCGGGACGTTTCTGGGTCAGTTCAATGTGCAGCGGTTCATCTCCGCCGTGAAAAAGAGCGGGAAGGAGGCGCCGCCGGACTCTGTATCTTCGTGGATGCAAAGCATTGGAACCCACCTGCGTGAGAAGTCGTTGTACGCCCTTTCTTTCTGCTCTGAGTTTTGGCTAACACCCGATGACACATTGGTTTTGAGTGTGGACGGTTATGGCGATGACAAGAAGCCCCGAAAGAAAGCACTTTTTCAGCACAAGTTTCCTCATCATAATTTGACAGTGGAGGCAGTTTGGCCCGGACTTTTCGTTGACAAACCCGGAAACTATTGGGATGTGCCATTCTCAATGTCACTTGATCTGGCTTCGGTTGCTTCTGACTCCGGTGCCAGTTATCATGTATGTGCACGTCATAATTCAGGGACTCCTGACCGGTTTGACGGTGGTCAGAGCGATGGAGTTCCTGCTACTCTGCTTCCTGGTTTGTCTGTCACAAGTGCATTTTCCTTTAAGAAGAACTTTGAGCTTTGGAGGAGTCATGCTCAGAAGTTGAGAATGGTCCAACCATTTGATATATTCCTTTCGAATCCTCATGTTTCGGCTTCAGGGATTATTGGTCCACTGCATTTGCAGAATTATACAGGTAGTTGA

Protein Analysis

302

Amino Acids

33.45

Weight (kDa)

8.79

Isoelectric Point (pI)

38.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 390
AasI GACNNNNNNGTC 1 cut(s) 83
Acc36I ACCTGC 1 cut(s) 390
AccB1I GGYRCC 3 cut(s) 131, 334, 641
AccBSI CCGCTC 1 cut(s) 324
AccI GTMKAC 1 cut(s) 59
AciI CCGC 6 cut(s) 172, 210, 298, 309, 324, 338
AclWI GGATC 1 cut(s) 98
AcoI YGGCCR 1 cut(s) 89
AcuI CTGAAG 1 cut(s) 843
AcyI GRCGYC 2 cut(s) 132, 335
AfaI GTAC 1 cut(s) 401
AfiI CCNNNNNNNGG 2 cut(s) 98, 215
AflIII ACRYGT 1 cut(s) 54
AgeI ACCGGT 1 cut(s) 687
AgsI TTSAA 1 cut(s) 289
AjiI CACGTC 1 cut(s) 665
AjnI CCWGG 2 cut(s) 143, 733
AleI CACNNNNGTG 1 cut(s) 384
AluBI AGCT 4 cut(s) 16, 39, 139, 781
AluI AGCT 4 cut(s) 16, 39, 139, 781
Alw21I GWGCWC 1 cut(s) 664
Alw44I GTGCAC 1 cut(s) 660
AlwI GGATC 1 cut(s) 98
AlwNI CAGNNNCTG 1 cut(s) 42
AoxI GGCC 4 cut(s) 89, 118, 146, 551
ApaLI GTGCAC 1 cut(s) 660
ApeKI GCWGC 3 cut(s) 36, 169, 295
ArsI GACNNNNNNTTYG 2 cut(s) 248, 280
AsiGI ACCGGT 1 cut(s) 687
AspLEI GCGC 2 cut(s) 134, 337
AspS9I GGNCC 9 cut(s) 46, 69, 85, 118, 147, 193, 552, 814, 872
AsuC2I CCSGG 3 cut(s) 99, 555, 576
AsuHPI GGTGA 2 cut(s) 115, 232
AsuII TTCGAA 1 cut(s) 839
AvaII GGWCC 6 cut(s) 46, 69, 85, 193, 814, 872
BaeGI GKGCMC 1 cut(s) 664
BanI GGYRCC 3 cut(s) 131, 334, 641
BarI GAAGNNNNNNTAC 2 cut(s) 383, 415
Bbv12I GWGCWC 1 cut(s) 664
BbvI GCAGC 3 cut(s) 48, 181, 307
BccI CCATC 2 cut(s) 15, 704
BceAI ACGGC 3 cut(s) 49, 232, 296
BciT130I CCWGG 2 cut(s) 145, 735
BcnI CCSGG 3 cut(s) 99, 555, 576
BfoI RGCGCY 2 cut(s) 135, 338
BfuAI ACCTGC 1 cut(s) 390
BisI GCNGC 4 cut(s) 37, 170, 296, 338
BlsI GCNGC 4 cut(s) 38, 171, 297, 339
Bme1390I CCNGG 5 cut(s) 99, 145, 555, 576, 735
Bme18I GGWCC 6 cut(s) 46, 69, 85, 193, 814, 872
BmgBI CACGTC 1 cut(s) 665
BmgT120I GGNCC 9 cut(s) 46, 69, 85, 118, 147, 193, 552, 814, 872
BmiI GGNNCC 8 cut(s) 47, 71, 96, 133, 195, 336, 376, 643
BmrFI CCNGG 5 cut(s) 99, 145, 555, 576, 735
BmsI GCATC 1 cut(s) 351
BoxI GACNNNNGTC 1 cut(s) 699
BplI GAGNNNNNCTC 2 cut(s) 781, 813
BpmI CTGGAG 2 cut(s) 127, 212
Bpu14I TTCGAA 1 cut(s) 839
BpuMI CCSGG 3 cut(s) 99, 555, 576
BsaHI GRCGYC 2 cut(s) 132, 335
BsaJI CCNNGG 3 cut(s) 65, 127, 189
BsaWI WCCGGW 2 cut(s) 638, 687
Bsc4I CCNNNNNNNGG 2 cut(s) 98, 215
Bse118I RCCGGY 2 cut(s) 91, 687
Bse1I ACTGG 2 cut(s) 87, 645
Bse3DI GCAATG 1 cut(s) 33
BseBI CCWGG 2 cut(s) 145, 735
BseDI CCNNGG 3 cut(s) 65, 127, 189
BseGI GGATG 2 cut(s) 366, 595
BseLI CCNNNNNNNGG 2 cut(s) 98, 215
BseMI GCAATG 1 cut(s) 33
BseMII CTCAG 3 cut(s) 8, 411, 812
BseNI ACTGG 2 cut(s) 87, 645
BseRI GAGGAG 1 cut(s) 802
BseSI GKGCMC 1 cut(s) 664
BseX3I CGGCCG 1 cut(s) 89
BseXI GCAGC 3 cut(s) 48, 181, 307
BsgI GTGCAG 1 cut(s) 314
Bsh1285I CGRYCG 1 cut(s) 92
BshFI GGCC 4 cut(s) 91, 120, 148, 553
BshNI GGYRCC 3 cut(s) 131, 334, 641
BshTI ACCGGT 1 cut(s) 687
BsiEI CGRYCG 1 cut(s) 92
BsiHKAI GWGCWC 1 cut(s) 664
BsiSI CCGG 8 cut(s) 88, 92, 99, 341, 555, 576, 639, 688
BslFI GGGAC 4 cut(s) 59, 179, 283, 691
BslI CCNNNNNNNGG 2 cut(s) 98, 215
BsmFI GGGAC 4 cut(s) 59, 179, 283, 691
BsnI GGCC 4 cut(s) 91, 120, 148, 553
Bsp119I TTCGAA 1 cut(s) 839
Bsp1286I GDGCHC 1 cut(s) 664
Bsp143I GATC 2 cut(s) 103, 613
BspACI CCGC 6 cut(s) 172, 210, 298, 309, 324, 338
BspANI GGCC 4 cut(s) 91, 120, 148, 553
BspCNI CTCAG 3 cut(s) 9, 412, 811
BspLI GGNNCC 8 cut(s) 47, 71, 96, 133, 195, 336, 376, 643
BspMI ACCTGC 1 cut(s) 390
BspPI GGATC 1 cut(s) 98
BspT104I TTCGAA 1 cut(s) 839
BspT107I GGYRCC 3 cut(s) 131, 334, 641
BsrBI CCGCTC 1 cut(s) 324
BsrDI GCAATG 1 cut(s) 33
BsrFI RCCGGY 2 cut(s) 91, 687
BsrI ACTGG 2 cut(s) 87, 645
BssAI RCCGGY 2 cut(s) 91, 687
BssECI CCNNGG 3 cut(s) 65, 127, 189
BssMI GATC 2 cut(s) 103, 613
BssNI GRCGYC 2 cut(s) 132, 335
BssT1I CCWWGG 1 cut(s) 189
Bst2UI CCWGG 2 cut(s) 145, 735
Bst4CI ACNGT 3 cut(s) 467, 538, 698
BstACI GRCGYC 2 cut(s) 132, 335
BstBI TTCGAA 1 cut(s) 839
BstDEI CTNAG 3 cut(s) 17, 420, 798
BstDSI CCRYGG 1 cut(s) 127
BstF5I GGATG 2 cut(s) 366, 595
BstH2I RGCGCY 2 cut(s) 135, 338
BstHHI GCGC 2 cut(s) 134, 337
BstKTI GATC 2 cut(s) 106, 616
BstMBI GATC 2 cut(s) 103, 613
BstMCI CGRYCG 1 cut(s) 92
BstMWI GCNNNNNNNGC 3 cut(s) 145, 178, 626
BstNI CCWGG 2 cut(s) 145, 735
BstNSI RCATGY 1 cut(s) 58
BstPAI GACNNNNGTC 1 cut(s) 699
BstSCI CCNGG 5 cut(s) 97, 143, 553, 574, 733
BstSLI GKGCMC 1 cut(s) 664
BstV1I GCAGC 3 cut(s) 48, 181, 307
BstZI CGGCCG 1 cut(s) 89
BsuRI GGCC 4 cut(s) 91, 120, 148, 553
BtgI CCRYGG 1 cut(s) 127
BtgZI GCGATG 2 cut(s) 489, 723
BtrI CACGTC 1 cut(s) 665
BtsCI GGATG 2 cut(s) 366, 595
BtsI GCAGTG 1 cut(s) 875
BtsIMutI CAGTG 2 cut(s) 543, 875
BveI ACCTGC 1 cut(s) 390
CaiI CAGNNNCTG 1 cut(s) 42
CfoI GCGC 2 cut(s) 134, 337
Cfr10I RCCGGY 2 cut(s) 91, 687
Cfr13I GGNCC 9 cut(s) 46, 69, 85, 118, 147, 193, 552, 814, 872
Csp6I GTAC 1 cut(s) 400
CspAI ACCGGT 1 cut(s) 687
CspCI CAANNNNNGTGG 2 cut(s) 864, 899
CviAII CATG 6 cut(s) 55, 166, 178, 653, 794, 848
CviQI GTAC 1 cut(s) 400
DdeI CTNAG 3 cut(s) 17, 420, 798
DinI GGCGCC 2 cut(s) 133, 336
DpnI GATC 2 cut(s) 105, 615
DpnII GATC 2 cut(s) 103, 613
DrdI GACNNNNNNGTC 1 cut(s) 83
DseDI GACNNNNNNGTC 1 cut(s) 83
EaeI YGGCCR 1 cut(s) 89
EagI CGGCCG 1 cut(s) 89
EciI GGCGGA 1 cut(s) 298
EclXI CGGCCG 1 cut(s) 89
Eco130I CCWWGG 1 cut(s) 189
Eco47I GGWCC 6 cut(s) 46, 69, 85, 193, 814, 872
Eco52I CGGCCG 1 cut(s) 89
Eco57I CTGAAG 1 cut(s) 843
EcoO109I RGGNCCY 2 cut(s) 46, 69
EcoRII CCWGG 2 cut(s) 143, 733
EcoT14I CCWWGG 1 cut(s) 189
EgeI GGCGCC 2 cut(s) 133, 336
EheI GGCGCC 2 cut(s) 133, 336
ErhI CCWWGG 1 cut(s) 189
FaeI CATG 6 cut(s) 58, 169, 181, 656, 797, 851
FalI AAGNNNNNCTT 2 cut(s) 758, 790
FaqI GGGAC 4 cut(s) 59, 179, 283, 691
FatI CATG 6 cut(s) 54, 165, 177, 652, 793, 847
FauI CCCGC 2 cut(s) 217, 317
FblI GTMKAC 1 cut(s) 59
Fnu4HI GCNGC 4 cut(s) 37, 170, 296, 338
FokI GGATG 2 cut(s) 373, 602
Fsp4HI GCNGC 4 cut(s) 37, 170, 296, 338
GlaI GCGC 2 cut(s) 133, 336
GluI GCNGC 4 cut(s) 37, 170, 296, 338
GsuI CTGGAG 2 cut(s) 127, 212
HaeII RGCGCY 2 cut(s) 135, 338
HaeIII GGCC 4 cut(s) 91, 120, 148, 553
HapII CCGG 8 cut(s) 88, 92, 99, 341, 555, 576, 639, 688
HhaI GCGC 2 cut(s) 134, 337
Hin1I GRCGYC 2 cut(s) 132, 335
Hin1II CATG 6 cut(s) 58, 169, 181, 656, 797, 851
Hin6I GCGC 2 cut(s) 132, 335
HinP1I GCGC 2 cut(s) 132, 335
HincII GTYRAC 2 cut(s) 60, 568
HindII GTYRAC 2 cut(s) 60, 568
HinfI GANTC 6 cut(s) 234, 344, 635, 679, 790, 841
HpaII CCGG 8 cut(s) 88, 92, 99, 341, 555, 576, 639, 688
HphI GGTGA 2 cut(s) 115, 232
Hpy166II GTNNAC 5 cut(s) 60, 463, 568, 662, 875
Hpy188I TCNGA 4 cut(s) 421, 634, 705, 801
Hpy188III TCNNGA 2 cut(s) 268, 683
Hpy8I GTNNAC 5 cut(s) 60, 463, 568, 662, 875
Hpy99I CGWCG 1 cut(s) 80
HpyAV CCTTC 2 cut(s) 207, 322
HpyCH4III ACNGT 3 cut(s) 467, 538, 698
HpyCH4IV ACGT 2 cut(s) 272, 664
HpyCH4V TGCA 7 cut(s) 169, 295, 364, 662, 755, 880, 886
HpyF10VI GCNNNNNNNGC 3 cut(s) 145, 178, 626
HpyF3I CTNAG 3 cut(s) 17, 420, 798
HpySE526I ACGT 2 cut(s) 272, 664
Hsp92I GRCGYC 2 cut(s) 132, 335
Hsp92II CATG 6 cut(s) 58, 169, 181, 656, 797, 851
HspAI GCGC 2 cut(s) 132, 335
KasI GGCGCC 2 cut(s) 131, 334
Kzo9I GATC 2 cut(s) 103, 613
Lsp1109I GCAGC 3 cut(s) 48, 181, 307
LweI GCATC 1 cut(s) 351
MaeII ACGT 2 cut(s) 272, 664
MaeIII GTNAC 2 cut(s) 606, 745
MalI GATC 2 cut(s) 105, 615
MbiI CCGCTC 1 cut(s) 324
MboI GATC 2 cut(s) 103, 613
MboII GAAGA 3 cut(s) 22, 345, 781
MfeI CAATTG 1 cut(s) 259
MhlI GDGCHC 1 cut(s) 664
MluCI AATT 4 cut(s) 259, 529, 670, 889
Mly113I GGCGCC 2 cut(s) 132, 335
MlyI GAGTC 5 cut(s) 243, 338, 629, 673, 799
MmeI TCCRAC 1 cut(s) 841
MseI TTAA 1 cut(s) 765
MslI CAYNNNNRTG 2 cut(s) 384, 657
MspA1I CMGCKG 2 cut(s) 172, 298
MspI CCGG 8 cut(s) 88, 92, 99, 341, 555, 576, 639, 688
MspR9I CCNGG 5 cut(s) 99, 145, 555, 576, 735
MunI CAATTG 1 cut(s) 259
MvaI CCWGG 2 cut(s) 145, 735
MwoI GCNNNNNNNGC 3 cut(s) 145, 178, 626
NarI GGCGCC 2 cut(s) 132, 335
NciI CCSGG 3 cut(s) 99, 555, 576
NdeII GATC 2 cut(s) 103, 613
NlaIII CATG 6 cut(s) 58, 169, 181, 656, 797, 851
NlaIV GGNNCC 8 cut(s) 47, 71, 96, 133, 195, 336, 376, 643
NmuCI GTSAC 2 cut(s) 606, 745
NspI RCATGY 1 cut(s) 58
NspV TTCGAA 1 cut(s) 839
OliI CACNNNNGTG 1 cut(s) 384
PaqCI CACCTGC 1 cut(s) 390
PciI ACATGT 1 cut(s) 54
PcsI WCGNNNNNNNCGW 1 cut(s) 471
PfeI GAWTC 1 cut(s) 841
PinAI ACCGGT 1 cut(s) 687
PkrI GCNGC 4 cut(s) 38, 171, 297, 339
PleI GAGTC 5 cut(s) 242, 338, 629, 673, 798
PluTI GGCGCC 2 cut(s) 135, 338
PpsI GAGTC 5 cut(s) 242, 338, 629, 673, 798
PpuMI RGGWCCY 2 cut(s) 46, 69
PscI ACATGT 1 cut(s) 54
PshAI GACNNNNGTC 1 cut(s) 699
Psp5II RGGWCCY 2 cut(s) 46, 69
Psp6I CCWGG 2 cut(s) 143, 733
PspGI CCWGG 2 cut(s) 143, 733
PspN4I GGNNCC 8 cut(s) 47, 71, 96, 133, 195, 336, 376, 643
PspPI GGNCC 9 cut(s) 46, 69, 85, 118, 147, 193, 552, 814, 872
PspPPI RGGWCCY 2 cut(s) 46, 69
PstNI CAGNNNCTG 1 cut(s) 42
RsaI GTAC 1 cut(s) 401
RsaNI GTAC 1 cut(s) 400
RseI CAYNNNNRTG 2 cut(s) 384, 657
SalI GTCGAC 1 cut(s) 58
SaqAI TTAA 1 cut(s) 765
SatI GCNGC 4 cut(s) 37, 170, 296, 338
Sau3AI GATC 2 cut(s) 103, 613
Sau96I GGNCC 9 cut(s) 46, 69, 85, 118, 147, 193, 552, 814, 872
SchI GAGTC 5 cut(s) 243, 338, 629, 673, 799
ScrFI CCNGG 5 cut(s) 99, 145, 555, 576, 735
SduI GDGCHC 1 cut(s) 664
SetI ASST 9 cut(s) 18, 41, 51, 141, 275, 384, 667, 783, 901
SfaNI GCATC 1 cut(s) 351
SfoI GGCGCC 2 cut(s) 133, 336
SfuI TTCGAA 1 cut(s) 839
SinI GGWCC 6 cut(s) 46, 69, 85, 193, 814, 872
SmiMI CAYNNNNRTG 2 cut(s) 384, 657
Sse9I AATT 4 cut(s) 259, 529, 670, 889
SsiI CCGC 6 cut(s) 172, 210, 298, 309, 324, 338
SspDI GGCGCC 2 cut(s) 131, 334
StyD4I CCNGG 5 cut(s) 97, 143, 553, 574, 733
StyI CCWWGG 1 cut(s) 189
TaaI ACNGT 3 cut(s) 467, 538, 698
TaiI ACGT 2 cut(s) 275, 667
TaqI TCGA 5 cut(s) 51, 59, 75, 159, 839
TasI AATT 4 cut(s) 259, 529, 670, 889
TauI GCSGC 1 cut(s) 340
TfiI GAWTC 1 cut(s) 841
Tru1I TTAA 1 cut(s) 765
Tru9I TTAA 1 cut(s) 765
TscAI CASTG 2 cut(s) 543, 882
TseFI GTSAC 2 cut(s) 606, 745
TseI GCWGC 3 cut(s) 36, 169, 295
Tsp45I GTSAC 2 cut(s) 606, 745
TspDTI ATGAA 4 cut(s) 23, 154, 166, 292
TspGWI ACGGA 1 cut(s) 93
TspRI CASTG 2 cut(s) 543, 882
VneI GTGCAC 1 cut(s) 660
VpaK11BI GGWCC 6 cut(s) 46, 69, 85, 193, 814, 872
XceI RCATGY 1 cut(s) 58
XmiI GTMKAC 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.