Prupe.1G104600_v2.0.a1

Protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic-like

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
8426134 .. 8428724
2591 bp
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UTR
Exon/CDS
Intron
Prupe.1G104600.2

Sequence Viewer

Length: 1410 bp
ATGGAGATGAAGAAGCTGAGATGGGCAATGGACGGAAGCTTTTGGGACCTTGACATATCGACTCCGAGGACCCTTGACGGACTGGCCAGACCCGTTCCCGGCGACCCACTTCCTCTGGGTCTGACCCGAGGCGCCAGGCTCTCCAGGCCCAAGCAAATTGACTTCATGCAGCGTTTCATGCCTGTCCCTTTTGTCCCTTCCTACGCCGCCGCCAATGGCTTCAGTCTTCAGCGAGTCCTCACCATACCCATTAGCGACAATTGGTTTGGGACGTTACTGGGCCAGTTCAATTTGCAGAGGTTCGTATCCTCTGTTAAGAAAAGTGGGAAGACAACACCACCAGACTCTGCATCTTCATGGATGCAAAGCATTGGAACCCACTTGCGTGAAAAGTCCTTGTATGCCCTTTCTTTCTGTTCTGACTTCTTGTTGACACCTGACGACACATTGGTGTTTAGTGTGGAGGCTTATGGTGATGAAAAGAAAGCTCGAAAGAAGGCACTTTTTCAGCACAAGTTTTCTCATCACAATTTGACAGTGGAGGCAGTTTGGCCCGGGCTTTTTGTTGACAAGCCTGGTAATTATTGGGATGTGCCATTCTCAATGTCACTTGATCTGGCTTCGGTTGCTGCTGACTCCGGGGCCAGTTATCGTATATGTGCCCATCATAATTCAGGTTCACCGGAGCGCCTTGACAGTGGTCAGAGCGATGGAGTTCCTGCTAGTCTGCTTCCTGGTTTGTCTGTCACAAGTACTTTTTCTTTTAAGAAGAACATTGAGCTTTGGAGAAATAATGCTCAGAAGTTGAGAATGGTGCAACCATATGATATATTCCTTTCAAATCCTCATGTTTCGGCTTCGGGGATTATTGGTGCTGCTATGACTGCCTCGTTTGGTGATAGTTCGGTTAGGTCACAAATCGCAGATGATGATCCTGAGGGTTTTAGAGGCTTTAGTATTCGGGCTCCTGAAGTAAAATCTGCCTTTCTAGCAGATATATTTGCATCTGCATCATTTACAGCCCAGCATGGAAACTTCCAAAGGCTATTCCTAGATCTTACTCGCTTTCATGCCCGTTTGGATTTTCCTTCTGGTTCTAAATTTCTTTCAGGTGCTACACATCTAGCACAAGATTTTTTCAATTCTCAACAGCCAAATTTGGAAGCTATCCAGGACATTTGCCCCAATGCCACACTTTCTCTTCAGCAGCAGATTGCTGGACCTTTCAGTTTCAGGGTCGATTCAGGAGTTGCAGTTGAACTAAAGAACCAAGACTGGAATATACGTGTGGACGAGCCCGTATTTGCCCTTGAATATGCACTGCAAGTCCTTGGTTCAGCCAAAGCCGTTGCTTGGTATTCGCCAAAGCACCAAGAATGCATGATAGAGCTTCGTTTTTACGAGACATAA

Protein Analysis

470

Amino Acids

52.03

Weight (kDa)

6.6

Isoelectric Point (pI)

42.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 131
AciI CCGC 2 cut(s) 207, 210
AclWI GGATC 1 cut(s) 926
AcoI YGGCCR 1 cut(s) 84
AcsI RAATTY 2 cut(s) 1100, 1156
AcuI CTGAAG 4 cut(s) 205, 212, 990, 1187
AcyI GRCGYC 1 cut(s) 132
AfaI GTAC 1 cut(s) 754
AfiI CCNNNNNNNGG 2 cut(s) 98, 1353
AflIII ACRYGT 1 cut(s) 1285
AgsI TTSAA 5 cut(s) 289, 840, 1141, 1259, 1313
AjnI CCWGG 5 cut(s) 134, 143, 574, 733, 1170
AleI CACNNNNGTG 2 cut(s) 384, 449
AluBI AGCT 6 cut(s) 16, 39, 488, 781, 1166, 1390
AluI AGCT 6 cut(s) 16, 39, 488, 781, 1166, 1390
Alw26I GTCTC 1 cut(s) 1397
AlwI GGATC 1 cut(s) 926
AlwNI CAGNNNCTG 1 cut(s) 347
Ama87I CYCGRG 2 cut(s) 126, 554
AoxI GGCC 5 cut(s) 84, 146, 280, 551, 642
ApeKI GCWGC 4 cut(s) 169, 629, 875, 1207
ApoI RAATTY 2 cut(s) 1100, 1156
ArsI GACNNNNNNTTYG 2 cut(s) 248, 280
AspLEI GCGC 2 cut(s) 134, 690
AspS9I GGNCC 7 cut(s) 46, 69, 147, 280, 552, 642, 1220
AsuC2I CCSGG 4 cut(s) 99, 555, 556, 640
AsuHPI GGTGA 4 cut(s) 232, 485, 672, 908
AvaI CYCGRG 2 cut(s) 126, 554
AvaII GGWCC 3 cut(s) 46, 69, 1220
AxyI CCTNAGG 1 cut(s) 936
BaeGI GKGCMC 1 cut(s) 664
BalI TGGCCA 1 cut(s) 86
BanI GGYRCC 1 cut(s) 131
BanII GRGCYC 2 cut(s) 967, 1299
BbsI GAAGAC 2 cut(s) 218, 335
BbvI GCAGC 4 cut(s) 181, 616, 862, 1219
BccI CCATC 3 cut(s) 15, 672, 704
BceAI ACGGC 1 cut(s) 1331
BciT130I CCWGG 5 cut(s) 136, 145, 576, 735, 1172
BciVI GTATCC 1 cut(s) 316
BcnI CCSGG 4 cut(s) 99, 555, 556, 640
BcoDI GTCTC 1 cut(s) 1397
BfaI CTAG 4 cut(s) 723, 989, 1052, 1124
BfoI RGCGCY 2 cut(s) 135, 691
BfuI GTATCC 1 cut(s) 316
BglII AGATCT 1 cut(s) 1054
BisI GCNGC 6 cut(s) 170, 207, 210, 630, 876, 1208
BlsI GCNGC 6 cut(s) 171, 208, 211, 631, 877, 1209
BmcAI AGTACT 1 cut(s) 754
Bme1390I CCNGG 9 cut(s) 99, 136, 145, 555, 556, 576, 640, 735, 1172
Bme18I GGWCC 3 cut(s) 46, 69, 1220
BmeT110I CYCGRG 2 cut(s) 126, 554
BmgT120I GGNCC 7 cut(s) 46, 69, 147, 280, 552, 642, 1220
BmiI GGNNCC 6 cut(s) 47, 71, 133, 376, 643, 966
BmrFI CCNGG 9 cut(s) 99, 136, 145, 555, 556, 576, 640, 735, 1172
BmrI ACTGGG 1 cut(s) 287
BmsI GCATC 4 cut(s) 351, 359, 1013, 1019
BmuI ACTGGG 1 cut(s) 287
BoxI GACNNNNGTC 1 cut(s) 699
BpiI GAAGAC 2 cut(s) 218, 335
BpmI CTGGAG 1 cut(s) 127
BpuMI CCSGG 4 cut(s) 99, 555, 556, 640
BsaAI YACGTR 1 cut(s) 1286
BsaBI GATNNNNATC 1 cut(s) 930
BsaHI GRCGYC 1 cut(s) 132
BsaJI CCNNGG 5 cut(s) 65, 127, 554, 639, 1330
BsaWI WCCGGW 1 cut(s) 682
BsaXI ACNNNNNCTCC 2 cut(s) 1239, 1269
Bsc4I CCNNNNNNNGG 2 cut(s) 98, 1353
Bse1I ACTGG 5 cut(s) 87, 282, 283, 645, 1280
Bse21I CCTNAGG 1 cut(s) 936
Bse3DI GCAATG 1 cut(s) 33
Bse8I GATNNNNATC 1 cut(s) 930
BseBI CCWGG 5 cut(s) 136, 145, 576, 735, 1172
BseDI CCNNGG 5 cut(s) 65, 127, 554, 639, 1330
BseGI GGATG 2 cut(s) 366, 595
BseJI GATNNNNATC 1 cut(s) 930
BseLI CCNNNNNNNGG 2 cut(s) 98, 1353
BseMI GCAATG 1 cut(s) 33
BseMII CTCAG 3 cut(s) 8, 812, 927
BseNI ACTGG 5 cut(s) 87, 282, 283, 645, 1280
BseSI GKGCMC 1 cut(s) 664
BseXI GCAGC 4 cut(s) 181, 616, 862, 1219
BseYI CCCAGC 1 cut(s) 1023
BshFI GGCC 5 cut(s) 86, 148, 282, 553, 644
BshNI GGYRCC 1 cut(s) 131
BsiHKCI CYCGRG 2 cut(s) 126, 554
BsiSI CCGG 4 cut(s) 99, 555, 639, 683
BslFI GGGAC 4 cut(s) 59, 170, 179, 283
BslI CCNNNNNNNGG 2 cut(s) 98, 1353
BsmAI GTCTC 1 cut(s) 1397
BsmFI GGGAC 4 cut(s) 59, 170, 179, 283
BsmI GAATGC 1 cut(s) 1382
BsnI GGCC 5 cut(s) 86, 148, 282, 553, 644
BsoBI CYCGRG 2 cut(s) 126, 554
Bsp1286I GDGCHC 3 cut(s) 664, 967, 1299
Bsp143I GATC 3 cut(s) 613, 931, 1054
BspACI CCGC 2 cut(s) 207, 210
BspANI GGCC 5 cut(s) 86, 148, 282, 553, 644
BspCNI CTCAG 3 cut(s) 9, 811, 928
BspLI GGNNCC 6 cut(s) 47, 71, 133, 376, 643, 966
BspPI GGATC 1 cut(s) 926
BspT107I GGYRCC 1 cut(s) 131
BsrDI GCAATG 1 cut(s) 33
BsrI ACTGG 5 cut(s) 87, 282, 283, 645, 1280
BssECI CCNNGG 5 cut(s) 65, 127, 554, 639, 1330
BssMI GATC 3 cut(s) 613, 931, 1054
BssNI GRCGYC 1 cut(s) 132
BssT1I CCWWGG 1 cut(s) 1330
Bst2UI CCWGG 5 cut(s) 136, 145, 576, 735, 1172
Bst4CI ACNGT 2 cut(s) 538, 698
Bst6I CTCTTC 1 cut(s) 1206
BstACI GRCGYC 1 cut(s) 132
BstBAI YACGTR 1 cut(s) 1286
BstDEI CTNAG 3 cut(s) 17, 798, 936
BstF5I GGATG 2 cut(s) 366, 595
BstH2I RGCGCY 2 cut(s) 135, 691
BstHHI GCGC 2 cut(s) 134, 690
BstKTI GATC 3 cut(s) 616, 934, 1057
BstMAI GTCTC 1 cut(s) 1397
BstMBI GATC 3 cut(s) 613, 931, 1054
BstMWI GCNNNNNNNGC 5 cut(s) 145, 178, 626, 884, 989
BstNI CCWGG 5 cut(s) 136, 145, 576, 735, 1172
BstPAI GACNNNNGTC 1 cut(s) 699
BstSCI CCNGG 9 cut(s) 97, 134, 143, 553, 554, 574, 638, 733, 1170
BstSLI GKGCMC 1 cut(s) 664
BstV1I GCAGC 4 cut(s) 181, 616, 862, 1219
BstV2I GAAGAC 2 cut(s) 218, 335
BstX2I RGATCY 1 cut(s) 1054
BstYI RGATCY 1 cut(s) 1054
Bsu36I CCTNAGG 1 cut(s) 936
BsuI GTATCC 1 cut(s) 316
BsuRI GGCC 5 cut(s) 86, 148, 282, 553, 644
BtgZI GCGATG 1 cut(s) 723
BtsCI GGATG 2 cut(s) 366, 595
BtsI GCAGTG 1 cut(s) 1319
BtsIMutI CAGTG 3 cut(s) 543, 703, 1319
CaiI CAGNNNCTG 1 cut(s) 347
CfoI GCGC 2 cut(s) 134, 690
Cfr13I GGNCC 7 cut(s) 46, 69, 147, 280, 552, 642, 1220
Cfr9I CCCGGG 1 cut(s) 554
Csp6I GTAC 1 cut(s) 753
CviAII CATG 7 cut(s) 166, 178, 357, 848, 1028, 1070, 1381
CviQI GTAC 1 cut(s) 753
DdeI CTNAG 3 cut(s) 17, 798, 936
DinI GGCGCC 1 cut(s) 133
DpnI GATC 3 cut(s) 615, 933, 1056
DpnII GATC 3 cut(s) 613, 931, 1054
EaeI YGGCCR 1 cut(s) 84
Eam1104I CTCTTC 1 cut(s) 1206
EarI CTCTTC 1 cut(s) 1206
Eco130I CCWWGG 1 cut(s) 1330
Eco24I GRGCYC 2 cut(s) 967, 1299
Eco47I GGWCC 3 cut(s) 46, 69, 1220
Eco57I CTGAAG 4 cut(s) 205, 212, 990, 1187
Eco81I CCTNAGG 1 cut(s) 936
Eco88I CYCGRG 2 cut(s) 126, 554
EcoO109I RGGNCCY 2 cut(s) 46, 69
EcoRII CCWGG 5 cut(s) 134, 143, 574, 733, 1170
EcoT14I CCWWGG 1 cut(s) 1330
EcoT22I ATGCAT 1 cut(s) 1382
EcoT38I GRGCYC 2 cut(s) 967, 1299
EgeI GGCGCC 1 cut(s) 133
EheI GGCGCC 1 cut(s) 133
ErhI CCWWGG 1 cut(s) 1330
FaeI CATG 7 cut(s) 169, 181, 360, 851, 1031, 1073, 1384
FaqI GGGAC 4 cut(s) 59, 170, 179, 283
FatI CATG 7 cut(s) 165, 177, 356, 847, 1027, 1069, 1380
FauNDI CATATG 1 cut(s) 823
Fnu4HI GCNGC 6 cut(s) 170, 207, 210, 630, 876, 1208
FokI GGATG 2 cut(s) 373, 602
FriOI GRGCYC 2 cut(s) 967, 1299
Fsp4HI GCNGC 6 cut(s) 170, 207, 210, 630, 876, 1208
FspBI CTAG 4 cut(s) 723, 989, 1052, 1124
GlaI GCGC 2 cut(s) 133, 689
GluI GCNGC 6 cut(s) 170, 207, 210, 630, 876, 1208
GsaI CCCAGC 1 cut(s) 1027
GsuI CTGGAG 1 cut(s) 127
HaeII RGCGCY 2 cut(s) 135, 691
HaeIII GGCC 5 cut(s) 86, 148, 282, 553, 644
HapII CCGG 4 cut(s) 99, 555, 639, 683
HhaI GCGC 2 cut(s) 134, 690
Hin1I GRCGYC 1 cut(s) 132
Hin1II CATG 7 cut(s) 169, 181, 360, 851, 1031, 1073, 1384
Hin6I GCGC 2 cut(s) 132, 688
HinP1I GCGC 2 cut(s) 132, 688
HincII GTYRAC 2 cut(s) 432, 568
HindII GTYRAC 2 cut(s) 432, 568
HindIII AAGCTT 1 cut(s) 37
HinfI GANTC 5 cut(s) 61, 234, 344, 635, 1241
HpaII CCGG 4 cut(s) 99, 555, 639, 683
HphI GGTGA 4 cut(s) 232, 485, 672, 908
Hpy166II GTNNAC 4 cut(s) 432, 568, 680, 1291
Hpy188I TCNGA 5 cut(s) 66, 123, 421, 705, 801
Hpy188III TCNNGA 3 cut(s) 935, 968, 1245
Hpy8I GTNNAC 4 cut(s) 432, 568, 680, 1291
HpyAV CCTTC 3 cut(s) 207, 490, 1098
HpyCH4III ACNGT 2 cut(s) 538, 698
HpyCH4IV ACGT 2 cut(s) 272, 1285
HpyF10VI GCNNNNNNNGC 5 cut(s) 145, 178, 626, 884, 989
HpyF3I CTNAG 3 cut(s) 17, 798, 936
HpySE526I ACGT 2 cut(s) 272, 1285
Hsp92I GRCGYC 1 cut(s) 132
Hsp92II CATG 7 cut(s) 169, 181, 360, 851, 1031, 1073, 1384
HspAI GCGC 2 cut(s) 132, 688
KasI GGCGCC 1 cut(s) 131
Kzo9I GATC 3 cut(s) 613, 931, 1054
LmnI GCTCC 2 cut(s) 685, 970
Lsp1109I GCAGC 4 cut(s) 181, 616, 862, 1219
LweI GCATC 4 cut(s) 351, 359, 1013, 1019
MaeI CTAG 4 cut(s) 723, 989, 1052, 1124
MaeII ACGT 2 cut(s) 272, 1285
MaeIII GTNAC 4 cut(s) 273, 606, 745, 912
MalI GATC 3 cut(s) 615, 933, 1056
MboI GATC 3 cut(s) 613, 931, 1054
MboII GAAGA 6 cut(s) 22, 218, 340, 345, 781, 1193
MfeI CAATTG 1 cut(s) 259
MflI RGATCY 1 cut(s) 1054
MhlI GDGCHC 3 cut(s) 664, 967, 1299
MlsI TGGCCA 1 cut(s) 86
MluCI AATT 9 cut(s) 156, 259, 289, 529, 580, 670, 1100, 1141, 1156
MluNI TGGCCA 1 cut(s) 86
Mly113I GGCGCC 1 cut(s) 132
MlyI GAGTC 4 cut(s) 55, 243, 338, 629
Mox20I TGGCCA 1 cut(s) 86
Mph1103I ATGCAT 1 cut(s) 1382
MscI TGGCCA 1 cut(s) 86
MseI TTAA 2 cut(s) 315, 765
MslI CAYNNNNRTG 3 cut(s) 355, 384, 449
Msp20I TGGCCA 1 cut(s) 86
MspI CCGG 4 cut(s) 99, 555, 639, 683
MspR9I CCNGG 9 cut(s) 99, 136, 145, 555, 556, 576, 640, 735, 1172
MunI CAATTG 1 cut(s) 259
Mva1269I GAATGC 1 cut(s) 1382
MvaI CCWGG 5 cut(s) 136, 145, 576, 735, 1172
MwoI GCNNNNNNNGC 5 cut(s) 145, 178, 626, 884, 989
NarI GGCGCC 1 cut(s) 132
NciI CCSGG 4 cut(s) 99, 555, 556, 640
NdeI CATATG 1 cut(s) 823
NdeII GATC 3 cut(s) 613, 931, 1054
NlaIII CATG 7 cut(s) 169, 181, 360, 851, 1031, 1073, 1384
NlaIV GGNNCC 6 cut(s) 47, 71, 133, 376, 643, 966
NmuCI GTSAC 3 cut(s) 606, 745, 912
NsiI ATGCAT 1 cut(s) 1382
OliI CACNNNNGTG 2 cut(s) 384, 449
PctI GAATGC 1 cut(s) 1382
PfeI GAWTC 1 cut(s) 1241
PfoI TCCNGGA 1 cut(s) 1170
PkrI GCNGC 6 cut(s) 171, 208, 211, 631, 877, 1209
PleI GAGTC 4 cut(s) 55, 242, 338, 629
PluTI GGCGCC 1 cut(s) 135
PpsI GAGTC 4 cut(s) 55, 242, 338, 629
Ppu21I YACGTR 1 cut(s) 1286
PpuMI RGGWCCY 2 cut(s) 46, 69
PshAI GACNNNNGTC 1 cut(s) 699
Psp5II RGGWCCY 2 cut(s) 46, 69
Psp6I CCWGG 5 cut(s) 134, 143, 574, 733, 1170
PspFI CCCAGC 1 cut(s) 1023
PspGI CCWGG 5 cut(s) 134, 143, 574, 733, 1170
PspN4I GGNNCC 6 cut(s) 47, 71, 133, 376, 643, 966
PspPI GGNCC 7 cut(s) 46, 69, 147, 280, 552, 642, 1220
PspPPI RGGWCCY 2 cut(s) 46, 69
PstNI CAGNNNCTG 1 cut(s) 347
PsuI RGATCY 1 cut(s) 1054
RsaI GTAC 1 cut(s) 754
RsaNI GTAC 1 cut(s) 753
RseI CAYNNNNRTG 3 cut(s) 355, 384, 449
SaqAI TTAA 2 cut(s) 315, 765
SatI GCNGC 6 cut(s) 170, 207, 210, 630, 876, 1208
Sau3AI GATC 3 cut(s) 613, 931, 1054
Sau96I GGNCC 7 cut(s) 46, 69, 147, 280, 552, 642, 1220
ScaI AGTACT 1 cut(s) 754
SchI GAGTC 4 cut(s) 55, 243, 338, 629
ScrFI CCNGG 9 cut(s) 99, 136, 145, 555, 556, 576, 640, 735, 1172
SduI GDGCHC 3 cut(s) 664, 967, 1299
SfaNI GCATC 4 cut(s) 351, 359, 1013, 1019
SfoI GGCGCC 1 cut(s) 133
SinI GGWCC 3 cut(s) 46, 69, 1220
SmaI CCCGGG 1 cut(s) 556
SmiMI CAYNNNNRTG 3 cut(s) 355, 384, 449
SrfI GCCCGGGC 1 cut(s) 556
Sse9I AATT 9 cut(s) 156, 259, 289, 529, 580, 670, 1100, 1141, 1156
SsiI CCGC 2 cut(s) 207, 210
SspDI GGCGCC 1 cut(s) 131
SspMI CTAG 4 cut(s) 723, 989, 1052, 1124
StyD4I CCNGG 9 cut(s) 97, 134, 143, 553, 554, 574, 638, 733, 1170
StyI CCWWGG 1 cut(s) 1330
TaaI ACNGT 2 cut(s) 538, 698
TaiI ACGT 2 cut(s) 275, 1288
TaqI TCGA 3 cut(s) 59, 490, 1239
TasI AATT 9 cut(s) 156, 259, 289, 529, 580, 670, 1100, 1141, 1156
TatI WGTACW 1 cut(s) 752
TauI GCSGC 2 cut(s) 209, 212
TfiI GAWTC 1 cut(s) 1241
Tru1I TTAA 2 cut(s) 315, 765
Tru9I TTAA 2 cut(s) 315, 765
TscAI CASTG 3 cut(s) 543, 703, 1326
TseFI GTSAC 3 cut(s) 606, 745, 912
TseI GCWGC 4 cut(s) 169, 629, 875, 1207
Tsp45I GTSAC 3 cut(s) 606, 745, 912
TspDTI ATGAA 6 cut(s) 23, 154, 166, 345, 492, 1058
TspGWI ACGGA 2 cut(s) 48, 93
TspMI CCCGGG 1 cut(s) 554
TspRI CASTG 3 cut(s) 543, 703, 1326
VpaK11BI GGWCC 3 cut(s) 46, 69, 1220
XapI RAATTY 2 cut(s) 1100, 1156
XmaI CCCGGG 1 cut(s) 554
XspI CTAG 4 cut(s) 723, 989, 1052, 1124
ZrmI AGTACT 1 cut(s) 754
Zsp2I ATGCAT 1 cut(s) 1382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.