Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8242681.1

Orthogroup ID

OG0009461

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 614

Gene Structure 614 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8242681.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 511 bp

atgaaaaccctgggaaagcacttacaggacaagtccttgtatgccctttcgttctgttctgacttgctgttgacacctgatgacacattgcttctgagtgtggagggttatggtgatgataagaagcctcgaaataaagcactgtttcagcacaggtttcctcatcacaatttgtcagtagaggcagtttggccagggctttttgtggataaggctggtgattattgggatgtgccattgtcaatgtcggttgatctggctacggttgcttcagattctggtgccagttatcgtgtgtgcgtgcatcataactcaggggcacccgagcgccttgatagtggtcagagtgaaggaatacctgctggtttgcttcctggtttggctgtcaagggtgctatttcctataggaagaatattgacctttggagaagtaatgctccgaagctgaaaatggtgcagccctttgatatattcctttcgaatcctcatgtttcagcttcagggattattg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0006869 GO:0008150 GO:0008289 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0010876 GO:0012505 GO:0016020 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032365 GO:0033036 GO:0034196 GO:0042170 GO:0042802 GO:0042803 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0046983 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070300 GO:0071702 GO:0098588 GO:0098805 GO:1901965 GO:1990052

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3769

Protein Analysis

170

Amino Acids

18.57

Weight (kDa)

6.64

Isoelectric Point (pI)

32.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009461)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06960 AT3G06960
fragaria_vesca	FvH4_4g21580 FvH4_4g21580 FvH4_4g21580
malus_domestica	MD13G1140500.v1.1 MD16G1135300.v1.1
prunus_persica	Prupe.1G104600_v2.0.a1 Prupe.1G104600_v2.0.a1 Prupe.1G104600_v2.0.a1
pyrus_communis	pycom13g12210
rosa_chinensis	RchiOBHm_Chr4g0427691
rosa_laevigata	RLG00000007216
rosa_multiflora	Rmu_co8242681.1_g000001 Rmu_sc0016038.1_g000002
rosa_roxburghii	Rroxscaffold_5G00369320
rosa_rugosa	Rorug04G0219500
rosa_samantha	Rh4AG275700 Rh4BG281700 Rh4CG297200 Rh4DG279100
rosa_wichuraiana	Rw4G023930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	367
AccB1I	GGYRCC	2 cut(s)	281, 319
AcoI	YGGCCR	1 cut(s)	191
AcuI	CTGAAG	2 cut(s)	255, 483
AjnI	CCWGG	3 cut(s)	9, 193, 373
AluBI	AGCT	2 cut(s)	445, 497
AluI	AGCT	2 cut(s)	445, 497
AlwNI	CAGNNNCTG	1 cut(s)	278
Ama87I	CYCGRG	1 cut(s)	323
AoxI	GGCC	1 cut(s)	191
ApeKI	GCWGC	1 cut(s)	457
AspLEI	GCGC	1 cut(s)	330
AsuHPI	GGTGA	2 cut(s)	125, 230
AsuII	TTCGAA	1 cut(s)	479
AvaI	CYCGRG	1 cut(s)	323
BaeGI	GKGCMC	1 cut(s)	322
BalI	TGGCCA	1 cut(s)	193
BanI	GGYRCC	2 cut(s)	281, 319
BbvI	GCAGC	1 cut(s)	469
BciT130I	CCWGG	3 cut(s)	11, 195, 375
BfmI	CTRYAG	1 cut(s)	403
BfoI	RGCGCY	1 cut(s)	331
BfuAI	ACCTGC	1 cut(s)	367
BisI	GCNGC	1 cut(s)	458
BlsI	GCNGC	1 cut(s)	459
Bme1390I	CCNGG	3 cut(s)	11, 195, 375
BmeT110I	CYCGRG	1 cut(s)	323
BmiI	GGNNCC	2 cut(s)	283, 321
BmrFI	CCNGG	3 cut(s)	11, 195, 375
BmsI	GCATC	1 cut(s)	313
Bpu14I	TTCGAA	1 cut(s)	479
BsaJI	CCNNGG	3 cut(s)	9, 10, 194
Bse1I	ACTGG	1 cut(s)	285
Bse3DI	GCAATG	1 cut(s)	86
BseBI	CCWGG	3 cut(s)	11, 195, 375
BseDI	CCNNGG	3 cut(s)	9, 10, 194
BseGI	GGATG	1 cut(s)	235
BseMI	GCAATG	1 cut(s)	86
BseMII	CTCAG	2 cut(s)	86, 327
BseNI	ACTGG	1 cut(s)	285
BseSI	GKGCMC	1 cut(s)	322
BseXI	GCAGC	1 cut(s)	469
BsgI	GTGCAG	1 cut(s)	476
BshFI	GGCC	1 cut(s)	193
BshNI	GGYRCC	2 cut(s)	281, 319
BsiHKCI	CYCGRG	1 cut(s)	323
BsnI	GGCC	1 cut(s)	193
BsoBI	CYCGRG	1 cut(s)	323
Bsp119I	TTCGAA	1 cut(s)	479
Bsp1286I	GDGCHC	1 cut(s)	322
Bsp143I	GATC	1 cut(s)	253
BspANI	GGCC	1 cut(s)	193
BspCNI	CTCAG	2 cut(s)	87, 326
BspLI	GGNNCC	2 cut(s)	283, 321
BspMI	ACCTGC	1 cut(s)	367
BspT104I	TTCGAA	1 cut(s)	479
BspT107I	GGYRCC	2 cut(s)	281, 319
BsrDI	GCAATG	1 cut(s)	86
BsrI	ACTGG	1 cut(s)	285
BssECI	CCNNGG	3 cut(s)	9, 10, 194
BssMI	GATC	1 cut(s)	253
Bst2UI	CCWGG	3 cut(s)	11, 195, 375
Bst4CI	ACNGT	2 cut(s)	144, 265
BstBI	TTCGAA	1 cut(s)	479
BstC8I	GCNNGC	1 cut(s)	302
BstDEI	CTNAG	2 cut(s)	95, 313
BstF5I	GGATG	1 cut(s)	235
BstH2I	RGCGCY	1 cut(s)	331
BstHHI	GCGC	1 cut(s)	330
BstKTI	GATC	1 cut(s)	256
BstMBI	GATC	1 cut(s)	253
BstMWI	GCNNNNNNNGC	1 cut(s)	266
BstNI	CCWGG	3 cut(s)	11, 195, 375
BstSCI	CCNGG	3 cut(s)	9, 193, 373
BstSFI	CTRYAG	1 cut(s)	403
BstSLI	GKGCMC	1 cut(s)	322
BstV1I	GCAGC	1 cut(s)	469
BsuRI	GGCC	1 cut(s)	193
BtsCI	GGATG	1 cut(s)	235
BtsIMutI	CAGTG	1 cut(s)	140
BveI	ACCTGC	1 cut(s)	367
Cac8I	GCNNGC	1 cut(s)	302
CaiI	CAGNNNCTG	1 cut(s)	278
CfoI	GCGC	1 cut(s)	330
CviAII	CATG	1 cut(s)	488
CviJI	RGCY	9 cut(s)	127, 193, 199, 215, 260, 383, 445, 460, 497
CviKI_1	RGCY	9 cut(s)	127, 193, 199, 215, 260, 383, 445, 460, 497
DdeI	CTNAG	2 cut(s)	95, 313
DpnI	GATC	1 cut(s)	255
DpnII	GATC	1 cut(s)	253
EaeI	YGGCCR	1 cut(s)	191
Eco57I	CTGAAG	2 cut(s)	255, 483
Eco88I	CYCGRG	1 cut(s)	323
EcoRII	CCWGG	3 cut(s)	9, 193, 373
FaeI	CATG	1 cut(s)	491
FaiI	YATR	6 cut(s)	42, 111, 309, 405, 470, 489
FatI	CATG	1 cut(s)	487
Fnu4HI	GCNGC	1 cut(s)	458
FokI	GGATG	1 cut(s)	242
Fsp4HI	GCNGC	1 cut(s)	458
GlaI	GCGC	1 cut(s)	329
GluI	GCNGC	1 cut(s)	458
HaeII	RGCGCY	1 cut(s)	331
HaeIII	GGCC	1 cut(s)	193
HhaI	GCGC	1 cut(s)	330
Hin1II	CATG	1 cut(s)	491
Hin6I	GCGC	1 cut(s)	328
HinP1I	GCGC	1 cut(s)	328
HincII	GTYRAC	1 cut(s)	72
HindII	GTYRAC	1 cut(s)	72
HinfI	GANTC	2 cut(s)	275, 481
HphI	GGTGA	2 cut(s)	125, 230
Hpy166II	GTNNAC	1 cut(s)	72
Hpy188I	TCNGA	5 cut(s)	61, 96, 274, 345, 441
Hpy8I	GTNNAC	1 cut(s)	72
HpyAV	CCTTC	1 cut(s)	344
HpyCH4III	ACNGT	2 cut(s)	144, 265
HpyCH4V	TGCA	2 cut(s)	304, 457
HpyF10VI	GCNNNNNNNGC	1 cut(s)	266
HpyF3I	CTNAG	2 cut(s)	95, 313
Hsp92II	CATG	1 cut(s)	491
HspAI	GCGC	1 cut(s)	328
Kzo9I	GATC	1 cut(s)	253
LmnI	GCTCC	1 cut(s)	442
Lsp1109I	GCAGC	1 cut(s)	469
LweI	GCATC	1 cut(s)	313
MalI	GATC	1 cut(s)	255
MboI	GATC	1 cut(s)	253
MboII	GAAGA	1 cut(s)	421
MhlI	GDGCHC	1 cut(s)	322
MlsI	TGGCCA	1 cut(s)	193
MluCI	AATT	1 cut(s)	169
MluNI	TGGCCA	1 cut(s)	193
MnlI	CCTC	5 cut(s)	97, 138, 171, 175, 495
Mox20I	TGGCCA	1 cut(s)	193
MscI	TGGCCA	1 cut(s)	193
Msp20I	TGGCCA	1 cut(s)	193
MspR9I	CCNGG	3 cut(s)	11, 195, 375
MvaI	CCWGG	3 cut(s)	11, 195, 375
MwoI	GCNNNNNNNGC	1 cut(s)	266
NdeII	GATC	1 cut(s)	253
NlaIII	CATG	1 cut(s)	491
NlaIV	GGNNCC	2 cut(s)	283, 321
NspV	TTCGAA	1 cut(s)	479
PasI	CCCWGGG	1 cut(s)	10
PfeI	GAWTC	2 cut(s)	275, 481
PkrI	GCNGC	1 cut(s)	459
Psp6I	CCWGG	3 cut(s)	9, 193, 373
PspGI	CCWGG	3 cut(s)	9, 193, 373
PspN4I	GGNNCC	2 cut(s)	283, 321
PstNI	CAGNNNCTG	1 cut(s)	278
SatI	GCNGC	1 cut(s)	458
Sau3AI	GATC	1 cut(s)	253
ScrFI	CCNGG	3 cut(s)	11, 195, 375
SduI	GDGCHC	1 cut(s)	322
SetI	ASST	6 cut(s)	79, 158, 361, 423, 447, 499
SfaNI	GCATC	1 cut(s)	313
SfcI	CTRYAG	1 cut(s)	403
SfuI	TTCGAA	1 cut(s)	479
Sse9I	AATT	1 cut(s)	169
SspI	AATATT	1 cut(s)	415
StyD4I	CCNGG	3 cut(s)	9, 193, 373
TaaI	ACNGT	2 cut(s)	144, 265
TaqI	TCGA	2 cut(s)	130, 479
TasI	AATT	1 cut(s)	169
TfiI	GAWTC	2 cut(s)	275, 481
TscAI	CASTG	1 cut(s)	147
TseI	GCWGC	1 cut(s)	457
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.