Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0009461

Physical Location & Seq

Genomic Coordinates Reverse (-)

24598491 .. 24601768

Gene Structure 3278 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g21580.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGCAAATGCTGGGGAAGCACTTGCAGGATAAGTCACTGTATGCTCTTTCTTTCTGCTCTGACTTGCTGTTGACGCCGAATGACACGTTGCTTTTGAGTGTGGAGAGTTATGGTGATGAGAAGAAGCCGAGGAATAAAGCACTGTTTCAGCACAGGTTTCCTAAACATAATTTGTCAGTGGAGGCGGTTTGGCCGGGGCTTTTTGTGGACAAGGGTGGTGATTATTGGGATGTGCCGTTGTCAATGTCACTTGATTTGGCTACGGTTGCTTCGGATTCTGGTGCCAGTTATCATGTGTGCGTGCATCATAATTCGGGGTCACCTGAGCGCGTTGATGGTGGTCCGAGTGAAGGAATACCTGCCGGTTTGCTTCCTGGTTTGGCTGTCAAGGGTGCTATTTCCTTTAGGAAGAATATTGATCTATGGAGAAGCAACGCTCCAAAGTTGAAAATGGTGCAACCGTTTGATATTTTCCTTTCGAATCCTCATGTTTCGACTTCAGGGATTATTGGTGCTGCTATGACTGCCTGTTTTGGTGACGGTGCGGCTAGGTCACAAATTGAGGATGATGATCCTCAGGGTTTTAGAGGCTTTAGTCTTCAGGCTCCTGCAGTAAAATCTGCCCTTCTAGCAGATGTTTTTGCGTCTGCATCATTTTCGGCACAGCATGGAAACTTCCAAAGGCTATTTCTAGATCTTACTCGTTTTCATGCTCGCCTGGATTTTCCTTCTGGAGCTAAATTTCTGTCGGGTGCCACACATCTAGCAGAAGATTATTTCAATTCTCAAAAGCCAAATTTGGAAGCTATTCAAGATATTTGCCCCAATGCCACCCTTTCTCTTCAGCAGCAGATTGCTGGACCTTTCAGTTTCAGGGTTGACTCAAAAGTTGCAGTTGAACTAGGGAACCAAAACTGGAATATACGTGTGGATGAGCCCGTATTTGCCATTGAGTATGCACTGCAAGTCCTTGGTTCAGCTAAAGCCGTTGCTTGGTATTCCCCAAAGCACCAAGAAGGCATGATAGAGCTTCGTTTTTACGAGACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0006869 GO:0008150 GO:0008289 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0010876 GO:0012505 GO:0016020 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032365 GO:0033036 GO:0034196 GO:0042170 GO:0042802 GO:0042803 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0046983 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070300 GO:0071702 GO:0098588 GO:0098805 GO:1901965 GO:1990052

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3769

Protein Analysis

350

Amino Acids

38.19

Weight (kDa)

5.87

Isoelectric Point (pI)

42.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009461)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06960 AT3G06960
fragaria_vesca	FvH4_4g21580 FvH4_4g21580 FvH4_4g21580
malus_domestica	MD13G1140500.v1.1 MD16G1135300.v1.1
prunus_persica	Prupe.1G104600_v2.0.a1 Prupe.1G104600_v2.0.a1 Prupe.1G104600_v2.0.a1
pyrus_communis	pycom13g12210
rosa_chinensis	RchiOBHm_Chr4g0427691
rosa_laevigata	RLG00000007216
rosa_multiflora	Rmu_co8242681.1_g000001 Rmu_sc0016038.1_g000002
rosa_roxburghii	Rroxscaffold_5G00369320
rosa_rugosa	Rorug04G0219500
rosa_samantha	Rh4AG275700 Rh4BG281700 Rh4CG297200 Rh4DG279100
rosa_wichuraiana	Rw4G023930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	367
AccB1I	GGYRCC	2 cut(s)	281, 752
AccII	CGCG	1 cut(s)	330
AciI	CCGC	2 cut(s)	185, 545
AclWI	GGATC	1 cut(s)	566
AcoI	YGGCCR	1 cut(s)	191
AcsI	RAATTY	2 cut(s)	740, 796
AcuI	CTGAAG	3 cut(s)	483, 584, 827
AcyI	GRCGYC	1 cut(s)	74
AfiI	CCNNNNNNNGG	2 cut(s)	350, 993
AflIII	ACRYGT	2 cut(s)	84, 925
AgsI	TTSAA	4 cut(s)	448, 781, 812, 899
AjnI	CCWGG	2 cut(s)	373, 717
AjuI	GAANNNNNNNTTGG	2 cut(s)	672, 704
AluBI	AGCT	4 cut(s)	737, 806, 980, 1030
AluI	AGCT	4 cut(s)	737, 806, 980, 1030
Alw26I	GTCTC	1 cut(s)	1037
AlwI	GGATC	1 cut(s)	566
AoxI	GGCC	1 cut(s)	191
ApeKI	GCWGC	2 cut(s)	515, 847
ApoI	RAATTY	2 cut(s)	740, 796
Asp700I	GAANNNNTTC	1 cut(s)	807
AspLEI	GCGC	1 cut(s)	330
AspS9I	GGNCC	2 cut(s)	341, 860
AsuC2I	CCSGG	1 cut(s)	195
AsuHPI	GGTGA	4 cut(s)	125, 230, 312, 548
AsuII	TTCGAA	1 cut(s)	479
AvaII	GGWCC	2 cut(s)	341, 860
AxyI	CCTNAGG	1 cut(s)	576
BanI	GGYRCC	2 cut(s)	281, 752
BanII	GRGCYC	1 cut(s)	939
BbsI	GAAGAC	1 cut(s)	590
BbvI	GCAGC	2 cut(s)	502, 859
BccI	CCATC	1 cut(s)	329
BceAI	ACGGC	2 cut(s)	220, 971
BcgI	CGANNNNNNTGC	2 cut(s)	639, 673
BciT130I	CCWGG	2 cut(s)	375, 719
BcnI	CCSGG	1 cut(s)	195
BcoDI	GTCTC	1 cut(s)	1037
BfaI	CTAG	5 cut(s)	549, 629, 692, 764, 902
BfmI	CTRYAG	1 cut(s)	609
BfuAI	ACCTGC	1 cut(s)	367
BglII	AGATCT	1 cut(s)	694
BisI	GCNGC	3 cut(s)	516, 546, 848
BlsI	GCNGC	3 cut(s)	517, 547, 849
Bme1390I	CCNGG	3 cut(s)	195, 375, 719
Bme18I	GGWCC	2 cut(s)	341, 860
BmgT120I	GGNCC	2 cut(s)	341, 860
BmiI	GGNNCC	4 cut(s)	283, 606, 754, 908
BmrFI	CCNGG	3 cut(s)	195, 375, 719
BmsI	GCATC	2 cut(s)	313, 659
BpiI	GAAGAC	1 cut(s)	590
BpmI	CTGGAG	1 cut(s)	753
Bpu10I	CCTNAGC	1 cut(s)	324
Bpu14I	TTCGAA	1 cut(s)	479
BpuMI	CCSGG	1 cut(s)	195
BsaAI	YACGTR	1 cut(s)	926
BsaBI	GATNNNNATC	1 cut(s)	570
BsaHI	GRCGYC	1 cut(s)	74
BsaJI	CCNNGG	3 cut(s)	128, 194, 970
Bsc4I	CCNNNNNNNGG	2 cut(s)	350, 993
Bse118I	RCCGGY	1 cut(s)	362
Bse1I	ACTGG	2 cut(s)	285, 920
Bse21I	CCTNAGG	1 cut(s)	576
Bse8I	GATNNNNATC	1 cut(s)	570
BseBI	CCWGG	2 cut(s)	375, 719
BseDI	CCNNGG	3 cut(s)	128, 194, 970
BseGI	GGATG	3 cut(s)	235, 571, 937
BseJI	GATNNNNATC	1 cut(s)	570
BseLI	CCNNNNNNNGG	2 cut(s)	350, 993
BseMII	CTCAG	2 cut(s)	315, 590
BseNI	ACTGG	2 cut(s)	285, 920
BseXI	GCAGC	2 cut(s)	502, 859
BseYI	CCCAGC	1 cut(s)	10
Bsh1236I	CGCG	1 cut(s)	330
BshFI	GGCC	1 cut(s)	193
BshNI	GGYRCC	2 cut(s)	281, 752
BsiSI	CCGG	2 cut(s)	194, 363
BslI	CCNNNNNNNGG	2 cut(s)	350, 993
BsmAI	GTCTC	1 cut(s)	1037
BsnI	GGCC	1 cut(s)	193
Bsp119I	TTCGAA	1 cut(s)	479
Bsp1286I	GDGCHC	1 cut(s)	939
Bsp143I	GATC	3 cut(s)	418, 571, 694
BspACI	CCGC	2 cut(s)	185, 545
BspANI	GGCC	1 cut(s)	193
BspCNI	CTCAG	2 cut(s)	316, 589
BspFNI	CGCG	1 cut(s)	330
BspLI	GGNNCC	4 cut(s)	283, 606, 754, 908
BspMAI	CTGCAG	1 cut(s)	613
BspMI	ACCTGC	1 cut(s)	367
BspPI	GGATC	1 cut(s)	566
BspT104I	TTCGAA	1 cut(s)	479
BspT107I	GGYRCC	2 cut(s)	281, 752
BsrFI	RCCGGY	1 cut(s)	362
BsrI	ACTGG	2 cut(s)	285, 920
BssAI	RCCGGY	1 cut(s)	362
BssECI	CCNNGG	3 cut(s)	128, 194, 970
BssMI	GATC	3 cut(s)	418, 571, 694
BssNI	GRCGYC	1 cut(s)	74
BssT1I	CCWWGG	1 cut(s)	970
Bst2UI	CCWGG	2 cut(s)	375, 719
Bst4CI	ACNGT	5 cut(s)	39, 144, 265, 462, 542
Bst6I	CTCTTC	1 cut(s)	846
BstACI	GRCGYC	1 cut(s)	74
BstBAI	YACGTR	1 cut(s)	926
BstBI	TTCGAA	1 cut(s)	479
BstC8I	GCNNGC	2 cut(s)	302, 715
BstDEI	CTNAG	2 cut(s)	324, 576
BstEII	GGTNACC	1 cut(s)	318
BstF5I	GGATG	3 cut(s)	235, 571, 937
BstFNI	CGCG	1 cut(s)	330
BstHHI	GCGC	1 cut(s)	330
BstKTI	GATC	3 cut(s)	421, 574, 697
BstMAI	GTCTC	1 cut(s)	1037
BstMBI	GATC	3 cut(s)	418, 571, 694
BstMWI	GCNNNNNNNGC	5 cut(s)	16, 73, 266, 524, 629
BstNI	CCWGG	2 cut(s)	375, 719
BstPI	GGTNACC	1 cut(s)	318
BstSCI	CCNGG	3 cut(s)	193, 373, 717
BstSFI	CTRYAG	1 cut(s)	609
BstUI	CGCG	1 cut(s)	330
BstV1I	GCAGC	2 cut(s)	502, 859
BstV2I	GAAGAC	1 cut(s)	590
BstX2I	RGATCY	1 cut(s)	694
BstYI	RGATCY	1 cut(s)	694
Bsu36I	CCTNAGG	1 cut(s)	576
BsuRI	GGCC	1 cut(s)	193
BtsCI	GGATG	3 cut(s)	235, 571, 937
BtsI	GCAGTG	1 cut(s)	959
BtsIMutI	CAGTG	4 cut(s)	35, 140, 183, 959
BveI	ACCTGC	1 cut(s)	367
Cac8I	GCNNGC	2 cut(s)	302, 715
CfoI	GCGC	1 cut(s)	330
Cfr10I	RCCGGY	1 cut(s)	362
Cfr13I	GGNCC	2 cut(s)	341, 860
CseI	GACGC	2 cut(s)	82, 633
CviAII	CATG	5 cut(s)	293, 488, 668, 710, 1021
DdeI	CTNAG	2 cut(s)	324, 576
DpnI	GATC	3 cut(s)	420, 573, 696
DpnII	GATC	3 cut(s)	418, 571, 694
EaeI	YGGCCR	1 cut(s)	191
Eam1104I	CTCTTC	1 cut(s)	846
EarI	CTCTTC	1 cut(s)	846
Eco130I	CCWWGG	1 cut(s)	970
Eco24I	GRGCYC	1 cut(s)	939
Eco47I	GGWCC	2 cut(s)	341, 860
Eco57I	CTGAAG	3 cut(s)	483, 584, 827
Eco81I	CCTNAGG	1 cut(s)	576
Eco91I	GGTNACC	1 cut(s)	318
EcoO65I	GGTNACC	1 cut(s)	318
EcoRII	CCWGG	2 cut(s)	373, 717
EcoT14I	CCWWGG	1 cut(s)	970
EcoT38I	GRGCYC	1 cut(s)	939
ErhI	CCWWGG	1 cut(s)	970
FaeI	CATG	5 cut(s)	296, 491, 671, 713, 1024
FatI	CATG	5 cut(s)	292, 487, 667, 709, 1020
Fnu4HI	GCNGC	3 cut(s)	516, 546, 848
FokI	GGATG	3 cut(s)	242, 578, 944
FriOI	GRGCYC	1 cut(s)	939
Fsp4HI	GCNGC	3 cut(s)	516, 546, 848
FspBI	CTAG	5 cut(s)	549, 629, 692, 764, 902
GlaI	GCGC	1 cut(s)	329
GluI	GCNGC	3 cut(s)	516, 546, 848
GsaI	CCCAGC	1 cut(s)	14
GsuI	CTGGAG	1 cut(s)	753
HaeIII	GGCC	1 cut(s)	193
HapII	CCGG	2 cut(s)	194, 363
HgaI	GACGC	2 cut(s)	82, 633
HhaI	GCGC	1 cut(s)	330
Hin1I	GRCGYC	1 cut(s)	74
Hin1II	CATG	5 cut(s)	296, 491, 671, 713, 1024
Hin6I	GCGC	1 cut(s)	328
HinP1I	GCGC	1 cut(s)	328
HincII	GTYRAC	2 cut(s)	72, 880
HindII	GTYRAC	2 cut(s)	72, 880
HinfI	GANTC	3 cut(s)	275, 481, 881
HpaII	CCGG	2 cut(s)	194, 363
HphI	GGTGA	4 cut(s)	125, 230, 312, 548
Hpy166II	GTNNAC	3 cut(s)	72, 208, 880
Hpy188I	TCNGA	3 cut(s)	61, 274, 345
Hpy188III	TCNNGA	3 cut(s)	692, 732, 812
Hpy8I	GTNNAC	3 cut(s)	72, 208, 880
HpyAV	CCTTC	4 cut(s)	344, 635, 738, 1010
HpyCH4III	ACNGT	5 cut(s)	39, 144, 265, 462, 542
HpyCH4IV	ACGT	2 cut(s)	86, 925
HpyCH4V	TGCA	9 cut(s)	4, 25, 304, 457, 611, 650, 893, 959, 964
HpyF10VI	GCNNNNNNNGC	5 cut(s)	16, 73, 266, 524, 629
HpyF3I	CTNAG	2 cut(s)	324, 576
HpySE526I	ACGT	2 cut(s)	86, 925
Hsp92I	GRCGYC	1 cut(s)	74
Hsp92II	CATG	5 cut(s)	296, 491, 671, 713, 1024
HspAI	GCGC	1 cut(s)	328
Kzo9I	GATC	3 cut(s)	418, 571, 694
LmnI	GCTCC	3 cut(s)	442, 610, 734
Lsp1109I	GCAGC	2 cut(s)	502, 859
LweI	GCATC	2 cut(s)	313, 659
MaeI	CTAG	5 cut(s)	549, 629, 692, 764, 902
MaeII	ACGT	2 cut(s)	86, 925
MaeIII	GTNAC	5 cut(s)	33, 246, 318, 536, 552
MalI	GATC	3 cut(s)	420, 573, 696
MboI	GATC	3 cut(s)	418, 571, 694
MboII	GAAGA	5 cut(s)	133, 421, 590, 782, 833
MflI	RGATCY	1 cut(s)	694
MhlI	GDGCHC	1 cut(s)	939
MluCI	AATT	6 cut(s)	169, 310, 558, 740, 781, 796
MlyI	GAGTC	1 cut(s)	875
MnlI	CCTC	6 cut(s)	123, 175, 495, 556, 581, 585
MroXI	GAANNNNTTC	1 cut(s)	807
MspI	CCGG	2 cut(s)	194, 363
MspR9I	CCNGG	3 cut(s)	195, 375, 719
MvaI	CCWGG	2 cut(s)	375, 719
MvnI	CGCG	1 cut(s)	330
MwoI	GCNNNNNNNGC	5 cut(s)	16, 73, 266, 524, 629
NciI	CCSGG	1 cut(s)	195
NdeII	GATC	3 cut(s)	418, 571, 694
NlaIII	CATG	5 cut(s)	296, 491, 671, 713, 1024
NlaIV	GGNNCC	4 cut(s)	283, 606, 754, 908
NmeAIII	GCCGAG	1 cut(s)	153
NmuCI	GTSAC	5 cut(s)	33, 246, 318, 536, 552
NspV	TTCGAA	1 cut(s)	479
PdmI	GAANNNNTTC	1 cut(s)	807
PfeI	GAWTC	2 cut(s)	275, 481
PkrI	GCNGC	3 cut(s)	517, 547, 849
PleI	GAGTC	1 cut(s)	875
PpsI	GAGTC	1 cut(s)	875
Ppu21I	YACGTR	1 cut(s)	926
Psp6I	CCWGG	2 cut(s)	373, 717
PspEI	GGTNACC	1 cut(s)	318
PspFI	CCCAGC	1 cut(s)	10
PspGI	CCWGG	2 cut(s)	373, 717
PspN4I	GGNNCC	4 cut(s)	283, 606, 754, 908
PspPI	GGNCC	2 cut(s)	341, 860
PstI	CTGCAG	1 cut(s)	613
PsuI	RGATCY	1 cut(s)	694
SatI	GCNGC	3 cut(s)	516, 546, 848
Sau3AI	GATC	3 cut(s)	418, 571, 694
Sau96I	GGNCC	2 cut(s)	341, 860
SchI	GAGTC	1 cut(s)	875
ScrFI	CCNGG	3 cut(s)	195, 375, 719
SduI	GDGCHC	1 cut(s)	939
SfaNI	GCATC	2 cut(s)	313, 659
SfcI	CTRYAG	1 cut(s)	609
SfuI	TTCGAA	1 cut(s)	479
SinI	GGWCC	2 cut(s)	341, 860
Sse9I	AATT	6 cut(s)	169, 310, 558, 740, 781, 796
SsiI	CCGC	2 cut(s)	185, 545
SspI	AATATT	1 cut(s)	415
SspMI	CTAG	5 cut(s)	549, 629, 692, 764, 902
StyD4I	CCNGG	3 cut(s)	193, 373, 717
StyI	CCWWGG	1 cut(s)	970
TaaI	ACNGT	5 cut(s)	39, 144, 265, 462, 542
TaiI	ACGT	2 cut(s)	89, 928
TaqI	TCGA	2 cut(s)	479, 494
TasI	AATT	6 cut(s)	169, 310, 558, 740, 781, 796
TauI	GCSGC	1 cut(s)	548
TfiI	GAWTC	2 cut(s)	275, 481
TscAI	CASTG	4 cut(s)	42, 147, 183, 966
TseFI	GTSAC	5 cut(s)	33, 246, 318, 536, 552
TseI	GCWGC	2 cut(s)	515, 847
Tsp45I	GTSAC	5 cut(s)	33, 246, 318, 536, 552
TspDTI	ATGAA	1 cut(s)	698
TspRI	CASTG	4 cut(s)	42, 147, 183, 966
VpaK11BI	GGWCC	2 cut(s)	341, 860
XapI	RAATTY	2 cut(s)	740, 796
XbaI	TCTAGA	1 cut(s)	691
XmnI	GAANNNNTTC	1 cut(s)	807
XspI	CTAG	5 cut(s)	549, 629, 692, 764, 902

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.