Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006567

Physical Location & Seq

Genomic Coordinates Forward (+)

2280194 .. 2282339

Gene Structure 2146 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G07170.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGTATGCTGATAAATTGGAGGCTGAGTCTGGAAGCAGGAAGGTCGTTAAGGATCGTATCAATGGCGGTTCTGGAGACATCTCTACTCGCGTGCGACAAGTGACTGGGAAGAGGCAAAGGCAGGACGACAAATGGGAGCATGATCTTTTCAGTAGTGACAAACCTCAACTTTCAAATCGCAGGGTTGATCCTAGAGATCTTCGTTTGAAGCTCCAAAAGAGACATCATGGGTCTCAAAGTGGGCGAGAAGCTGGTTCAGGCGTGCGGGATTTACGGGATCAGCTCTCTGGGACAATGAATCAGCAACCAAAAAACAGTGACCCACCAAAATCCAAAGCGGAGGCTGCTAGGCCAAGTATGAAGAGCGTAGCGACTGAAACAGAGACTAGAAAAACTTCCAGTCAAGCTACCAGGAAGAAATCACAGCAGGCTGATTCATCGGTTGATAGCTTTCTTGAATCATTGGGTCTCGAGAAATATTCAACAGCGTTTCAAGTGGAAGAAGTTGATATGGATGCTCTCATGCATATGACAGATGATGACCTCAAGGCTATGCTCATACCGATGGGTCCGAGGAAGAAGATACTTCTTGCTTTGGGATCTAAACCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAM_1

Protein Analysis

203

Amino Acids

22.68

Weight (kDa)

9.66

Isoelectric Point (pI)

39.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAM_1	PF00536	124 - 181	5.3e-16	SAM domain (Sterile alpha motif)
SAM_2	PF07647	128 - 181	4e-09	SAM domain (Sterile alpha motif)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006567)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07170 AT3G07170 AT5G48680
fragaria_vesca	FvH4_2g18710 FvH4_2g18710 FvH4_2g18710 FvH4_5g09350
malus_domestica	MD05G1172900.v1.1 MD10G1161300.v1.1
prunus_persica	Prupe.8G200300_v2.0.a1
pyrus_communis	pycom05g15950 pycom10g13930
rosa_chinensis	RchiOBHm_Chr6g0284331
rosa_laevigata	RLG00000012751
rosa_multiflora	Rmu_sc0002698.1_g000013
rosa_roxburghii	Rroxscaffold_7G00184740
rosa_rugosa	Rorug06G0162300 Rorug06G0162300 Rorug06G0162400 Rorug06G0162500
rosa_samantha	Rh6AG275200 Rh6BG275700 Rh6CG277400 Rh6CG277600 Rh6DG270400
rosa_wichuraiana	Rw6G023680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	90
AciI	CCGC	3 cut(s)	66, 265, 338
AclWI	GGATC	4 cut(s)	60, 182, 285, 607
AgsI	TTSAA	5 cut(s)	174, 208, 458, 483, 494
AjnI	CCWGG	1 cut(s)	410
AluBI	AGCT	5 cut(s)	211, 251, 283, 407, 450
AluI	AGCT	5 cut(s)	211, 251, 283, 407, 450
Alw26I	GTCTC	5 cut(s)	69, 214, 237, 377, 473
AlwI	GGATC	4 cut(s)	60, 182, 285, 607
Ama87I	CYCGRG	1 cut(s)	470
AoxI	GGCC	1 cut(s)	350
ApeKI	GCWGC	1 cut(s)	344
Asp700I	GAANNNNTTC	1 cut(s)	394
AspS9I	GGNCC	1 cut(s)	569
AvaI	CYCGRG	1 cut(s)	470
AvaII	GGWCC	1 cut(s)	569
BbvI	GCAGC	1 cut(s)	331
BccI	CCATC	1 cut(s)	559
BcgI	CGANNNNNNTGC	2 cut(s)	25, 59
BciT130I	CCWGG	1 cut(s)	412
BcoDI	GTCTC	5 cut(s)	69, 214, 237, 377, 473
BfaI	CTAG	3 cut(s)	192, 348, 387
BglII	AGATCT	1 cut(s)	196
BisI	GCNGC	1 cut(s)	345
BlsI	GCNGC	1 cut(s)	346
Bme1390I	CCNGG	1 cut(s)	412
Bme18I	GGWCC	1 cut(s)	569
BmeT110I	CYCGRG	1 cut(s)	470
BmgT120I	GGNCC	1 cut(s)	569
BmiI	GGNNCC	1 cut(s)	570
BmrFI	CCNGG	1 cut(s)	412
BmrI	ACTGGG	1 cut(s)	114
BmsI	GCATC	1 cut(s)	505
BmuI	ACTGGG	1 cut(s)	114
BpmI	CTGGAG	1 cut(s)	93
BpuEI	CTTGAG	1 cut(s)	530
BsaI	GGTCTC	2 cut(s)	237, 473
BsaJI	CCNNGG	1 cut(s)	572
BsaXI	ACNNNNNCTCC	2 cut(s)	11, 41
Bse1I	ACTGG	2 cut(s)	109, 399
BseBI	CCWGG	1 cut(s)	412
BseDI	CCNNGG	1 cut(s)	572
BseGI	GGATG	1 cut(s)	520
BseMII	CTCAG	1 cut(s)	15
BseNI	ACTGG	2 cut(s)	109, 399
BseXI	GCAGC	1 cut(s)	331
Bsh1236I	CGCG	1 cut(s)	90
BshFI	GGCC	1 cut(s)	352
BsiHKCI	CYCGRG	1 cut(s)	470
BslFI	GGGAC	1 cut(s)	304
BsmAI	GTCTC	5 cut(s)	69, 214, 237, 377, 473
BsmFI	GGGAC	1 cut(s)	304
BsnI	GGCC	1 cut(s)	352
Bso31I	GGTCTC	2 cut(s)	237, 473
BsoBI	CYCGRG	1 cut(s)	470
Bsp143I	GATC	6 cut(s)	52, 142, 187, 196, 277, 599
BspACI	CCGC	3 cut(s)	66, 265, 338
BspANI	GGCC	1 cut(s)	352
BspCNI	CTCAG	1 cut(s)	16
BspFNI	CGCG	1 cut(s)	90
BspLI	GGNNCC	1 cut(s)	570
BspPI	GGATC	4 cut(s)	60, 182, 285, 607
BspQI	GCTCTTC	1 cut(s)	356
BspTNI	GGTCTC	2 cut(s)	237, 473
BsrI	ACTGG	2 cut(s)	109, 399
BssECI	CCNNGG	1 cut(s)	572
BssMI	GATC	6 cut(s)	52, 142, 187, 196, 277, 599
Bst2UI	CCWGG	1 cut(s)	412
Bst4CI	ACNGT	1 cut(s)	317
Bst6I	CTCTTC	2 cut(s)	104, 356
BstC8I	GCNNGC	3 cut(s)	92, 263, 429
BstDEI	CTNAG	1 cut(s)	24
BstF5I	GGATG	1 cut(s)	520
BstFNI	CGCG	1 cut(s)	90
BstKTI	GATC	6 cut(s)	55, 145, 190, 199, 280, 602
BstMAI	GTCTC	5 cut(s)	69, 214, 237, 377, 473
BstMBI	GATC	6 cut(s)	52, 142, 187, 196, 277, 599
BstMWI	GCNNNNNNNGC	1 cut(s)	344
BstNI	CCWGG	1 cut(s)	412
BstSCI	CCNGG	1 cut(s)	410
BstUI	CGCG	1 cut(s)	90
BstV1I	GCAGC	1 cut(s)	331
BstX2I	RGATCY	2 cut(s)	196, 599
BstYI	RGATCY	2 cut(s)	196, 599
BsuRI	GGCC	1 cut(s)	352
BtsCI	GGATG	1 cut(s)	520
BtsIMutI	CAGTG	1 cut(s)	322
Cac8I	GCNNGC	3 cut(s)	92, 263, 429
Cfr13I	GGNCC	1 cut(s)	569
CviAII	CATG	3 cut(s)	140, 227, 523
DdeI	CTNAG	1 cut(s)	24
DpnI	GATC	6 cut(s)	54, 144, 189, 198, 279, 601
DpnII	GATC	6 cut(s)	52, 142, 187, 196, 277, 599
Eam1104I	CTCTTC	2 cut(s)	104, 356
EarI	CTCTTC	2 cut(s)	104, 356
Eco31I	GGTCTC	2 cut(s)	237, 473
Eco47I	GGWCC	1 cut(s)	569
Eco88I	CYCGRG	1 cut(s)	470
EcoRII	CCWGG	1 cut(s)	410
EcoT22I	ATGCAT	1 cut(s)	528
FaeI	CATG	3 cut(s)	143, 230, 526
FaqI	GGGAC	1 cut(s)	304
FatI	CATG	3 cut(s)	139, 226, 522
FauI	CCCGC	1 cut(s)	258
FauNDI	CATATG	1 cut(s)	528
Fnu4HI	GCNGC	1 cut(s)	345
FokI	GGATG	1 cut(s)	527
Fsp4HI	GCNGC	1 cut(s)	345
FspBI	CTAG	3 cut(s)	192, 348, 387
GluI	GCNGC	1 cut(s)	345
GsuI	CTGGAG	1 cut(s)	93
HaeIII	GGCC	1 cut(s)	352
Hin1II	CATG	3 cut(s)	143, 230, 526
HinfI	GANTC	4 cut(s)	26, 298, 434, 458
Hpy188I	TCNGA	1 cut(s)	573
Hpy188III	TCNNGA	5 cut(s)	30, 72, 455, 470, 472
HpyAV	CCTTC	1 cut(s)	34
HpyCH4III	ACNGT	1 cut(s)	317
HpyCH4V	TGCA	1 cut(s)	526
HpyF10VI	GCNNNNNNNGC	1 cut(s)	344
HpyF3I	CTNAG	1 cut(s)	24
Hsp92II	CATG	3 cut(s)	143, 230, 526
Kzo9I	GATC	6 cut(s)	52, 142, 187, 196, 277, 599
LguI	GCTCTTC	1 cut(s)	356
LmnI	GCTCC	2 cut(s)	136, 216
Lsp1109I	GCAGC	1 cut(s)	331
LweI	GCATC	1 cut(s)	505
MaeI	CTAG	3 cut(s)	192, 348, 387
MaeIII	GTNAC	3 cut(s)	100, 155, 317
MalI	GATC	6 cut(s)	54, 144, 189, 198, 279, 601
MboI	GATC	6 cut(s)	52, 142, 187, 196, 277, 599
MboII	GAAGA	7 cut(s)	121, 191, 373, 427, 512, 589, 592
MflI	RGATCY	2 cut(s)	196, 599
MluCI	AATT	1 cut(s)	14
MlyI	GAGTC	1 cut(s)	35
MnlI	CCTC	6 cut(s)	13, 105, 174, 334, 554, 567
Mph1103I	ATGCAT	1 cut(s)	528
MroXI	GAANNNNTTC	1 cut(s)	394
MseI	TTAA	1 cut(s)	48
MslI	CAYNNNNRTG	2 cut(s)	527, 563
MspR9I	CCNGG	1 cut(s)	412
MvaI	CCWGG	1 cut(s)	412
MvnI	CGCG	1 cut(s)	90
MwoI	GCNNNNNNNGC	1 cut(s)	344
NdeI	CATATG	1 cut(s)	528
NdeII	GATC	6 cut(s)	52, 142, 187, 196, 277, 599
NlaIII	CATG	3 cut(s)	143, 230, 526
NlaIV	GGNNCC	1 cut(s)	570
NmuCI	GTSAC	3 cut(s)	100, 155, 317
NsiI	ATGCAT	1 cut(s)	528
PaeR7I	CTCGAG	1 cut(s)	470
PciSI	GCTCTTC	1 cut(s)	356
PdmI	GAANNNNTTC	1 cut(s)	394
PfeI	GAWTC	3 cut(s)	298, 434, 458
PkrI	GCNGC	1 cut(s)	346
PleI	GAGTC	1 cut(s)	34
PpsI	GAGTC	1 cut(s)	34
Psp6I	CCWGG	1 cut(s)	410
PspGI	CCWGG	1 cut(s)	410
PspN4I	GGNNCC	1 cut(s)	570
PspPI	GGNCC	1 cut(s)	569
PsuI	RGATCY	2 cut(s)	196, 599
RseI	CAYNNNNRTG	2 cut(s)	527, 563
SapI	GCTCTTC	1 cut(s)	356
SaqAI	TTAA	1 cut(s)	48
SatI	GCNGC	1 cut(s)	345
Sau3AI	GATC	6 cut(s)	52, 142, 187, 196, 277, 599
Sau96I	GGNCC	1 cut(s)	569
SchI	GAGTC	1 cut(s)	35
ScrFI	CCNGG	1 cut(s)	412
SetI	ASST	8 cut(s)	45, 166, 213, 253, 285, 409, 452, 546
SfaNI	GCATC	1 cut(s)	505
Sfr274I	CTCGAG	1 cut(s)	470
SinI	GGWCC	1 cut(s)	569
SlaI	CTCGAG	1 cut(s)	470
SmiMI	CAYNNNNRTG	2 cut(s)	527, 563
SmlI	CTYRAG	2 cut(s)	470, 545
SmoI	CTYRAG	2 cut(s)	470, 545
Sse9I	AATT	1 cut(s)	14
SsiI	CCGC	3 cut(s)	66, 265, 338
SspI	AATATT	1 cut(s)	479
SspMI	CTAG	3 cut(s)	192, 348, 387
StyD4I	CCNGG	1 cut(s)	410
TaaI	ACNGT	1 cut(s)	317
TaqI	TCGA	1 cut(s)	471
TasI	AATT	1 cut(s)	14
TfiI	GAWTC	3 cut(s)	298, 434, 458
Tru1I	TTAA	1 cut(s)	48
Tru9I	TTAA	1 cut(s)	48
TscAI	CASTG	1 cut(s)	322
TseFI	GTSAC	3 cut(s)	100, 155, 317
TseI	GCWGC	1 cut(s)	344
Tsp45I	GTSAC	3 cut(s)	100, 155, 317
TspDTI	ATGAA	3 cut(s)	311, 374, 426
TspRI	CASTG	1 cut(s)	322
VpaK11BI	GGWCC	1 cut(s)	569
XhoI	CTCGAG	1 cut(s)	470
XmnI	GAANNNNTTC	1 cut(s)	394
XspI	CTAG	3 cut(s)	192, 348, 387
Zsp2I	ATGCAT	1 cut(s)	528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.