Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0006567

Physical Location & Seq

Genomic Coordinates Reverse (-)

18968410 .. 18972282

Gene Structure 3873 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G200300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGTATGCTGATCGAGAGGAAGCTGATACCAAGAGGTCGATAAAGGACCGTCTTAATGGCAGCTTCAGGGATAACTCTGGTCGCCGTAGACAAATAGCAGGAAAAAGGCAAAGACAAGATGACAAGTGGGAGCATGATCTATATGAGGACAATGATCCTCAAGTTTCAAATCGCAAAGTTGATGCTCGAGACCTTCGTTTGAAGCTCCAAAGGAAAAGTTTCAAACAATCATCTCAAAGTGGAACAAGATCTCTTTCAGGTGTAAGGGACCTACGGGAAAAGCTATCTGGTACCATGGTTCCACAACCAGTGAATGCTGATCCACCAAAGACAAAATTGGAAGCTGCCAAACCAGTCAGGAGAAGTACAGCAGTTGGAGCCTCTGCACAAGAGACTAAAAAAGTTACCAACCCAGCTTCTAGAAAGAAGACTTCACAAAAGGCTGGCGCATCAGTGGATGAATTTTTGACGTCCTTGGATCTTGAAAAATATTCCATCACATTTCAGGCCGAGGAAGTGGATATGACAGCTCTTGTGCACATGACTGATGAGGACCTCAAGGCTCTAGGAATACCAATGGGCCCAAGGAAGAAGATACTTTTGGCATTGGAAACAAGAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAM_1

Protein Analysis

208

Amino Acids

23.36

Weight (kDa)

9.84

Isoelectric Point (pI)

44.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006567)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07170 AT3G07170 AT5G48680
fragaria_vesca	FvH4_2g18710 FvH4_2g18710 FvH4_2g18710 FvH4_5g09350
malus_domestica	MD05G1172900.v1.1 MD10G1161300.v1.1
prunus_persica	Prupe.8G200300_v2.0.a1
pyrus_communis	pycom05g15950 pycom10g13930
rosa_chinensis	RchiOBHm_Chr6g0284331
rosa_laevigata	RLG00000012751
rosa_multiflora	Rmu_sc0002698.1_g000013
rosa_roxburghii	Rroxscaffold_7G00184740
rosa_rugosa	Rorug06G0162300 Rorug06G0162300 Rorug06G0162400 Rorug06G0162500
rosa_samantha	Rh6AG275200 Rh6BG275700 Rh6CG277400 Rh6CG277600 Rh6DG270400
rosa_wichuraiana	Rw6G023680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	473
Acc65I	GGTACC	1 cut(s)	290
AccB1I	GGYRCC	1 cut(s)	290
AccI	GTMKAC	1 cut(s)	88
AclWI	GGATC	3 cut(s)	149, 314, 486
AcsI	RAATTY	1 cut(s)	461
AcuI	CTGAAG	1 cut(s)	49
AcyI	GRCGYC	1 cut(s)	470
AfaI	GTAC	2 cut(s)	292, 367
AgsI	TTSAA	4 cut(s)	168, 202, 223, 485
AjuI	GAANNNNNNNTTGG	2 cut(s)	584, 616
AluBI	AGCT	7 cut(s)	23, 63, 205, 283, 344, 416, 530
AluI	AGCT	7 cut(s)	23, 63, 205, 283, 344, 416, 530
Alw21I	GWGCWC	1 cut(s)	540
Alw26I	GTCTC	2 cut(s)	183, 386
Alw44I	GTGCAC	1 cut(s)	536
AlwI	GGATC	3 cut(s)	149, 314, 486
Ama87I	CYCGRG	1 cut(s)	186
AoxI	GGCC	2 cut(s)	507, 580
ApaI	GGGCCC	1 cut(s)	584
ApaLI	GTGCAC	1 cut(s)	536
ApeKI	GCWGC	2 cut(s)	60, 344
ApoI	RAATTY	1 cut(s)	461
Asp700I	GAANNNNTTC	1 cut(s)	218
Asp718I	GGTACC	1 cut(s)	290
AspLEI	GCGC	1 cut(s)	449
AspS9I	GGNCC	5 cut(s)	46, 268, 553, 580, 581
AvaI	CYCGRG	1 cut(s)	186
AvaII	GGWCC	3 cut(s)	46, 268, 553
BaeGI	GKGCMC	2 cut(s)	540, 584
BaeI	ACNNNNGTAYC	2 cut(s)	282, 315
BanI	GGYRCC	1 cut(s)	290
BanII	GRGCYC	1 cut(s)	584
BbsI	GAAGAC	1 cut(s)	434
Bbv12I	GWGCWC	1 cut(s)	540
BbvI	GCAGC	2 cut(s)	72, 331
BccI	CCATC	1 cut(s)	503
BceAI	ACGGC	1 cut(s)	69
BcoDI	GTCTC	2 cut(s)	183, 386
BfaI	CTAG	2 cut(s)	420, 566
BglII	AGATCT	1 cut(s)	248
BisI	GCNGC	2 cut(s)	61, 345
BlsI	GCNGC	2 cut(s)	62, 346
Bme18I	GGWCC	3 cut(s)	46, 268, 553
BmeT110I	CYCGRG	1 cut(s)	186
BmgT120I	GGNCC	5 cut(s)	46, 268, 553, 580, 581
BmiI	GGNNCC	5 cut(s)	269, 292, 300, 379, 582
BmsI	GCATC	2 cut(s)	172, 458
BpiI	GAAGAC	1 cut(s)	434
BpuEI	CTTGAG	2 cut(s)	144, 542
BsaHI	GRCGYC	1 cut(s)	470
BsaI	GGTCTC	1 cut(s)	183
BsaJI	CCNNGG	4 cut(s)	294, 474, 510, 584
Bse1I	ACTGG	2 cut(s)	308, 353
BseDI	CCNNGG	4 cut(s)	294, 474, 510, 584
BseGI	GGATG	1 cut(s)	463
BseNI	ACTGG	2 cut(s)	308, 353
BseSI	GKGCMC	2 cut(s)	540, 584
BseXI	GCAGC	2 cut(s)	72, 331
BseYI	CCCAGC	1 cut(s)	412
BsgI	GTGCAG	1 cut(s)	369
BshFI	GGCC	2 cut(s)	509, 582
BshNI	GGYRCC	1 cut(s)	290
BsiHKAI	GWGCWC	1 cut(s)	540
BsiHKCI	CYCGRG	1 cut(s)	186
BslFI	GGGAC	1 cut(s)	281
BsmAI	GTCTC	2 cut(s)	183, 386
BsmFI	GGGAC	1 cut(s)	281
BsmI	GAATGC	1 cut(s)	319
BsnI	GGCC	2 cut(s)	509, 582
Bso31I	GGTCTC	1 cut(s)	183
BsoBI	CYCGRG	1 cut(s)	186
Bsp120I	GGGCCC	1 cut(s)	580
Bsp1286I	GDGCHC	2 cut(s)	540, 584
Bsp143I	GATC	6 cut(s)	10, 136, 154, 248, 319, 478
Bsp19I	CCATGG	1 cut(s)	294
BspANI	GGCC	2 cut(s)	509, 582
BspLI	GGNNCC	5 cut(s)	269, 292, 300, 379, 582
BspPI	GGATC	3 cut(s)	149, 314, 486
BspT107I	GGYRCC	1 cut(s)	290
BspTNI	GGTCTC	1 cut(s)	183
BsrI	ACTGG	2 cut(s)	308, 353
BssECI	CCNNGG	4 cut(s)	294, 474, 510, 584
BssMI	GATC	6 cut(s)	10, 136, 154, 248, 319, 478
BssNI	GRCGYC	1 cut(s)	470
BssT1I	CCWWGG	3 cut(s)	294, 474, 584
Bst4CI	ACNGT	1 cut(s)	50
BstACI	GRCGYC	1 cut(s)	470
BstC8I	GCNNGC	1 cut(s)	445
BstDSI	CCRYGG	1 cut(s)	294
BstF5I	GGATG	1 cut(s)	463
BstHHI	GCGC	1 cut(s)	449
BstKTI	GATC	6 cut(s)	13, 139, 157, 251, 322, 481
BstMAI	GTCTC	2 cut(s)	183, 386
BstMBI	GATC	6 cut(s)	10, 136, 154, 248, 319, 478
BstMWI	GCNNNNNNNGC	1 cut(s)	377
BstSLI	GKGCMC	2 cut(s)	540, 584
BstV1I	GCAGC	2 cut(s)	72, 331
BstV2I	GAAGAC	1 cut(s)	434
BstX2I	RGATCY	2 cut(s)	248, 478
BstYI	RGATCY	2 cut(s)	248, 478
BsuRI	GGCC	2 cut(s)	509, 582
BtgI	CCRYGG	1 cut(s)	294
BtsCI	GGATG	1 cut(s)	463
BtsIMutI	CAGTG	2 cut(s)	315, 459
Cac8I	GCNNGC	1 cut(s)	445
CfoI	GCGC	1 cut(s)	449
Cfr13I	GGNCC	5 cut(s)	46, 268, 553, 580, 581
Csp6I	GTAC	2 cut(s)	291, 366
CviAII	CATG	3 cut(s)	134, 295, 541
CviQI	GTAC	2 cut(s)	291, 366
DpnI	GATC	6 cut(s)	12, 138, 156, 250, 321, 480
DpnII	GATC	6 cut(s)	10, 136, 154, 248, 319, 478
Eco130I	CCWWGG	3 cut(s)	294, 474, 584
Eco24I	GRGCYC	1 cut(s)	584
Eco31I	GGTCTC	1 cut(s)	183
Eco47I	GGWCC	3 cut(s)	46, 268, 553
Eco57I	CTGAAG	1 cut(s)	49
Eco88I	CYCGRG	1 cut(s)	186
EcoO109I	RGGNCCY	2 cut(s)	268, 553
EcoT14I	CCWWGG	3 cut(s)	294, 474, 584
EcoT38I	GRGCYC	1 cut(s)	584
ErhI	CCWWGG	3 cut(s)	294, 474, 584
FaeI	CATG	3 cut(s)	137, 298, 544
FaiI	YATR	7 cut(s)	6, 135, 142, 144, 296, 524, 542
FaqI	GGGAC	1 cut(s)	281
FatI	CATG	3 cut(s)	133, 294, 540
FblI	GTMKAC	1 cut(s)	88
Fnu4HI	GCNGC	2 cut(s)	61, 345
FokI	GGATG	1 cut(s)	470
FriOI	GRGCYC	1 cut(s)	584
Fsp4HI	GCNGC	2 cut(s)	61, 345
FspBI	CTAG	2 cut(s)	420, 566
GlaI	GCGC	1 cut(s)	448
GluI	GCNGC	2 cut(s)	61, 345
GsaI	CCCAGC	1 cut(s)	416
HaeIII	GGCC	2 cut(s)	509, 582
HhaI	GCGC	1 cut(s)	449
Hin1I	GRCGYC	1 cut(s)	470
Hin1II	CATG	3 cut(s)	137, 298, 544
Hin6I	GCGC	1 cut(s)	447
HinP1I	GCGC	1 cut(s)	447
HinfI	GANTC	1 cut(s)	618
Hpy166II	GTNNAC	2 cut(s)	89, 538
Hpy188I	TCNGA	1 cut(s)	623
Hpy188III	TCNNGA	5 cut(s)	14, 188, 358, 420, 482
Hpy8I	GTNNAC	2 cut(s)	89, 538
HpyAV	CCTTC	1 cut(s)	203
HpyCH4III	ACNGT	1 cut(s)	50
HpyCH4IV	ACGT	1 cut(s)	470
HpyCH4V	TGCA	2 cut(s)	386, 538
HpyF10VI	GCNNNNNNNGC	1 cut(s)	377
HpySE526I	ACGT	1 cut(s)	470
Hsp92I	GRCGYC	1 cut(s)	470
Hsp92II	CATG	3 cut(s)	137, 298, 544
HspAI	GCGC	1 cut(s)	447
KpnI	GGTACC	1 cut(s)	294
Kzo9I	GATC	6 cut(s)	10, 136, 154, 248, 319, 478
LmnI	GCTCC	3 cut(s)	130, 210, 377
Lsp1109I	GCAGC	2 cut(s)	72, 331
LweI	GCATC	2 cut(s)	172, 458
MaeI	CTAG	2 cut(s)	420, 566
MaeII	ACGT	1 cut(s)	470
MaeIII	GTNAC	1 cut(s)	403
MalI	GATC	6 cut(s)	12, 138, 156, 250, 321, 480
MboI	GATC	6 cut(s)	10, 136, 154, 248, 319, 478
MboII	GAAGA	3 cut(s)	439, 601, 604
MflI	RGATCY	2 cut(s)	248, 478
MhlI	GDGCHC	2 cut(s)	540, 584
MluCI	AATT	2 cut(s)	335, 461
MmeI	TCCRAC	1 cut(s)	355
MnlI	CCTC	8 cut(s)	10, 27, 139, 168, 391, 505, 544, 566
MroXI	GAANNNNTTC	1 cut(s)	218
MseI	TTAA	1 cut(s)	54
Mva1269I	GAATGC	1 cut(s)	319
MwoI	GCNNNNNNNGC	1 cut(s)	377
NcoI	CCATGG	1 cut(s)	294
NdeII	GATC	6 cut(s)	10, 136, 154, 248, 319, 478
NlaIII	CATG	3 cut(s)	137, 298, 544
NlaIV	GGNNCC	5 cut(s)	269, 292, 300, 379, 582
NmeAIII	GCCGAG	1 cut(s)	535
PaeR7I	CTCGAG	1 cut(s)	186
PcsI	WCGNNNNNNNCGW	1 cut(s)	193
PctI	GAATGC	1 cut(s)	319
PdmI	GAANNNNTTC	1 cut(s)	218
PkrI	GCNGC	2 cut(s)	62, 346
PpuMI	RGGWCCY	2 cut(s)	268, 553
Psp5II	RGGWCCY	2 cut(s)	268, 553
PspFI	CCCAGC	1 cut(s)	412
PspN4I	GGNNCC	5 cut(s)	269, 292, 300, 379, 582
PspOMI	GGGCCC	1 cut(s)	580
PspPI	GGNCC	5 cut(s)	46, 268, 553, 580, 581
PspPPI	RGGWCCY	2 cut(s)	268, 553
PsuI	RGATCY	2 cut(s)	248, 478
RsaI	GTAC	2 cut(s)	292, 367
RsaNI	GTAC	2 cut(s)	291, 366
SaqAI	TTAA	1 cut(s)	54
SatI	GCNGC	2 cut(s)	61, 345
Sau3AI	GATC	6 cut(s)	10, 136, 154, 248, 319, 478
Sau96I	GGNCC	5 cut(s)	46, 268, 553, 580, 581
SduI	GDGCHC	2 cut(s)	540, 584
SfaNI	GCATC	2 cut(s)	172, 458
Sfr274I	CTCGAG	1 cut(s)	186
SinI	GGWCC	3 cut(s)	46, 268, 553
SlaI	CTCGAG	1 cut(s)	186
SmlI	CTYRAG	3 cut(s)	159, 186, 557
SmoI	CTYRAG	3 cut(s)	159, 186, 557
Sse9I	AATT	2 cut(s)	335, 461
SspI	AATATT	1 cut(s)	491
SspMI	CTAG	2 cut(s)	420, 566
StyI	CCWWGG	3 cut(s)	294, 474, 584
TaaI	ACNGT	1 cut(s)	50
TaiI	ACGT	1 cut(s)	473
TaqI	TCGA	3 cut(s)	13, 38, 187
TasI	AATT	2 cut(s)	335, 461
TatI	WGTACW	1 cut(s)	365
Tru1I	TTAA	1 cut(s)	54
Tru9I	TTAA	1 cut(s)	54
TscAI	CASTG	2 cut(s)	315, 459
TseI	GCWGC	2 cut(s)	60, 344
TspDTI	ATGAA	1 cut(s)	474
TspRI	CASTG	2 cut(s)	315, 459
VneI	GTGCAC	1 cut(s)	536
VpaK11BI	GGWCC	3 cut(s)	46, 268, 553
XapI	RAATTY	1 cut(s)	461
XbaI	TCTAGA	1 cut(s)	419
XhoI	CTCGAG	1 cut(s)	186
XmiI	GTMKAC	1 cut(s)	88
XmnI	GAANNNNTTC	1 cut(s)	218
XspI	CTAG	2 cut(s)	420, 566
ZraI	GACGTC	1 cut(s)	471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.