Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0006567

Physical Location & Seq

Genomic Coordinates Reverse (-)

19373370 .. 19376756

Gene Structure 3387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g15950.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGTATGCTGATCGAGAGGAAGCTGATACCAAGTTGTCCGCAAAGGACCGCCTCAATGGCGGCTTCAGGGAGGACTCTGGTCGCCGTAGACAGATAGCTGGAAAGAGGCAGAGACAAGATGGCAAGTGGGAGCATGATCTATATCAGGATGATCCTCAAGTTTCAAATCGGAAAGTCGATGCTCGGGACCTTCGATTGAAGCTCCAAAAGAAAAGTTTCAAAAAAAGTGGAAATCGATCCCTTTCAGGTGTAAGGGACCTGCGCGAAAAGCTATCTGGTACTATGAATCCACAACCAATGAACACAGATCCACCAAAACCGAAAGTGGAGGCTGCCAAACCAGCCAGGAGAAGTATTGCTGTTGGCACCCCTGCAACAGAGACTAAAAAAGTGGCCAACCCAGCTCCTAGAAAGAAGGCTTCACAGAAGGCTGGTTCATCAGTGGATGAATTTTTGACGTCCTTGGATCTTGAAAAATACTCCATCACATTTCAGGCAGAGGAAGTTGATATGACAGCTCTTGTGCACATGACTGATGAGGACCTCAAGGCTCTAGGAATACCAATGGGCCCAAGGAAGAAGATACTTTTGGCATTGGAATCAAGAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAM_1

Protein Analysis

204

Amino Acids

22.77

Weight (kDa)

9.86

Isoelectric Point (pI)

38.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006567)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07170 AT3G07170 AT5G48680
fragaria_vesca	FvH4_2g18710 FvH4_2g18710 FvH4_2g18710 FvH4_5g09350
malus_domestica	MD05G1172900.v1.1 MD10G1161300.v1.1
prunus_persica	Prupe.8G200300_v2.0.a1
pyrus_communis	pycom05g15950 pycom10g13930
rosa_chinensis	RchiOBHm_Chr6g0284331
rosa_laevigata	RLG00000012751
rosa_multiflora	Rmu_sc0002698.1_g000013
rosa_roxburghii	Rroxscaffold_7G00184740
rosa_rugosa	Rorug06G0162300 Rorug06G0162300 Rorug06G0162400 Rorug06G0162500
rosa_samantha	Rh6AG275200 Rh6BG275700 Rh6CG277400 Rh6CG277600 Rh6DG270400
rosa_wichuraiana	Rw6G023680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	461
Acc36I	ACCTGC	1 cut(s)	267
AccB1I	GGYRCC	1 cut(s)	365
AccI	GTMKAC	1 cut(s)	88
AccII	CGCG	1 cut(s)	264
AciI	CCGC	3 cut(s)	39, 49, 60
AclWI	GGATC	4 cut(s)	146, 231, 302, 474
AcoI	YGGCCR	1 cut(s)	393
AcsI	RAATTY	1 cut(s)	449
AcuI	CTGAAG	1 cut(s)	49
AcyI	GRCGYC	1 cut(s)	458
AfaI	GTAC	1 cut(s)	280
AgsI	TTSAA	4 cut(s)	165, 199, 220, 473
AjnI	CCWGG	1 cut(s)	344
AjuI	GAANNNNNNNTTGG	2 cut(s)	572, 604
AluBI	AGCT	6 cut(s)	23, 98, 202, 271, 404, 518
AluI	AGCT	6 cut(s)	23, 98, 202, 271, 404, 518
Alw21I	GWGCWC	1 cut(s)	528
Alw26I	GTCTC	2 cut(s)	106, 374
Alw44I	GTGCAC	1 cut(s)	524
AlwI	GGATC	4 cut(s)	146, 231, 302, 474
Ama87I	CYCGRG	1 cut(s)	183
AoxI	GGCC	2 cut(s)	393, 568
ApaI	GGGCCC	1 cut(s)	572
ApaLI	GTGCAC	1 cut(s)	524
ApeKI	GCWGC	1 cut(s)	332
ApoI	RAATTY	1 cut(s)	449
Asp700I	GAANNNNTTC	1 cut(s)	215
AspLEI	GCGC	1 cut(s)	264
AspS9I	GGNCC	6 cut(s)	46, 187, 256, 541, 568, 569
AvaI	CYCGRG	1 cut(s)	183
AvaII	GGWCC	4 cut(s)	46, 187, 256, 541
BaeGI	GKGCMC	2 cut(s)	528, 572
BalI	TGGCCA	1 cut(s)	395
BanI	GGYRCC	1 cut(s)	365
BanII	GRGCYC	1 cut(s)	572
Bbv12I	GWGCWC	1 cut(s)	528
BbvI	GCAGC	1 cut(s)	319
BccI	CCATC	2 cut(s)	113, 491
BceAI	ACGGC	1 cut(s)	69
BciT130I	CCWGG	1 cut(s)	346
BcoDI	GTCTC	2 cut(s)	106, 374
BfaI	CTAG	2 cut(s)	408, 554
BfuAI	ACCTGC	1 cut(s)	267
BglI	GCCNNNNNGGC	1 cut(s)	57
BisI	GCNGC	2 cut(s)	61, 333
BlsI	GCNGC	2 cut(s)	62, 334
Bme1390I	CCNGG	1 cut(s)	346
Bme18I	GGWCC	4 cut(s)	46, 187, 256, 541
BmeT110I	CYCGRG	1 cut(s)	183
BmgT120I	GGNCC	6 cut(s)	46, 187, 256, 541, 568, 569
BmiI	GGNNCC	4 cut(s)	188, 257, 367, 570
BmrFI	CCNGG	1 cut(s)	346
BmsI	GCATC	1 cut(s)	169
BoxI	GACNNNNGTC	1 cut(s)	78
BpuEI	CTTGAG	2 cut(s)	141, 530
Bsa29I	ATCGAT	1 cut(s)	235
BsaBI	GATNNNNATC	1 cut(s)	141
BsaHI	GRCGYC	1 cut(s)	458
BsaJI	CCNNGG	2 cut(s)	462, 572
Bse8I	GATNNNNATC	1 cut(s)	141
BseBI	CCWGG	1 cut(s)	346
BseCI	ATCGAT	1 cut(s)	235
BseDI	CCNNGG	2 cut(s)	462, 572
BseGI	GGATG	2 cut(s)	154, 451
BseJI	GATNNNNATC	1 cut(s)	141
BseSI	GKGCMC	2 cut(s)	528, 572
BseXI	GCAGC	1 cut(s)	319
BseYI	CCCAGC	1 cut(s)	400
Bsh1236I	CGCG	1 cut(s)	264
BshFI	GGCC	2 cut(s)	395, 570
BshNI	GGYRCC	1 cut(s)	365
BshVI	ATCGAT	1 cut(s)	235
BsiHKAI	GWGCWC	1 cut(s)	528
BsiHKCI	CYCGRG	1 cut(s)	183
BslFI	GGGAC	2 cut(s)	200, 269
BsmAI	GTCTC	2 cut(s)	106, 374
BsmFI	GGGAC	2 cut(s)	200, 269
BsnI	GGCC	2 cut(s)	395, 570
BsoBI	CYCGRG	1 cut(s)	183
Bsp120I	GGGCCC	1 cut(s)	568
Bsp1286I	GDGCHC	2 cut(s)	528, 572
Bsp143I	GATC	6 cut(s)	10, 136, 151, 236, 307, 466
BspACI	CCGC	3 cut(s)	39, 49, 60
BspANI	GGCC	2 cut(s)	395, 570
BspDI	ATCGAT	1 cut(s)	235
BspFNI	CGCG	1 cut(s)	264
BspLI	GGNNCC	4 cut(s)	188, 257, 367, 570
BspMI	ACCTGC	1 cut(s)	267
BspPI	GGATC	4 cut(s)	146, 231, 302, 474
BspT107I	GGYRCC	1 cut(s)	365
BssECI	CCNNGG	2 cut(s)	462, 572
BssMI	GATC	6 cut(s)	10, 136, 151, 236, 307, 466
BssNI	GRCGYC	1 cut(s)	458
BssT1I	CCWWGG	2 cut(s)	462, 572
Bst2UI	CCWGG	1 cut(s)	346
BstACI	GRCGYC	1 cut(s)	458
BstF5I	GGATG	2 cut(s)	154, 451
BstFNI	CGCG	1 cut(s)	264
BstHHI	GCGC	1 cut(s)	264
BstKTI	GATC	6 cut(s)	13, 139, 154, 239, 310, 469
BstMAI	GTCTC	2 cut(s)	106, 374
BstMBI	GATC	6 cut(s)	10, 136, 151, 236, 307, 466
BstMWI	GCNNNNNNNGC	4 cut(s)	57, 268, 341, 401
BstNI	CCWGG	1 cut(s)	346
BstPAI	GACNNNNGTC	1 cut(s)	78
BstSCI	CCNGG	1 cut(s)	344
BstSLI	GKGCMC	2 cut(s)	528, 572
BstUI	CGCG	1 cut(s)	264
BstV1I	GCAGC	1 cut(s)	319
BstX2I	RGATCY	2 cut(s)	307, 466
BstYI	RGATCY	2 cut(s)	307, 466
Bsu15I	ATCGAT	1 cut(s)	235
BsuRI	GGCC	2 cut(s)	395, 570
BsuTUI	ATCGAT	1 cut(s)	235
BtsCI	GGATG	2 cut(s)	154, 451
BtsIMutI	CAGTG	1 cut(s)	447
BveI	ACCTGC	1 cut(s)	267
CfoI	GCGC	1 cut(s)	264
Cfr13I	GGNCC	6 cut(s)	46, 187, 256, 541, 568, 569
ClaI	ATCGAT	1 cut(s)	235
Csp6I	GTAC	1 cut(s)	279
CspCI	CAANNNNNGTGG	2 cut(s)	208, 243
CviAII	CATG	2 cut(s)	134, 529
CviQI	GTAC	1 cut(s)	279
DpnI	GATC	6 cut(s)	12, 138, 153, 238, 309, 468
DpnII	GATC	6 cut(s)	10, 136, 151, 236, 307, 466
EaeI	YGGCCR	1 cut(s)	393
Eco130I	CCWWGG	2 cut(s)	462, 572
Eco24I	GRGCYC	1 cut(s)	572
Eco47I	GGWCC	4 cut(s)	46, 187, 256, 541
Eco57I	CTGAAG	1 cut(s)	49
Eco88I	CYCGRG	1 cut(s)	183
EcoO109I	RGGNCCY	3 cut(s)	187, 256, 541
EcoRII	CCWGG	1 cut(s)	344
EcoT14I	CCWWGG	2 cut(s)	462, 572
EcoT38I	GRGCYC	1 cut(s)	572
ErhI	CCWWGG	2 cut(s)	462, 572
FaeI	CATG	2 cut(s)	137, 532
FaiI	YATR	6 cut(s)	6, 135, 142, 284, 512, 530
FaqI	GGGAC	2 cut(s)	200, 269
FatI	CATG	2 cut(s)	133, 528
FblI	GTMKAC	1 cut(s)	88
Fnu4HI	GCNGC	2 cut(s)	61, 333
FokI	GGATG	2 cut(s)	161, 458
FriOI	GRGCYC	1 cut(s)	572
Fsp4HI	GCNGC	2 cut(s)	61, 333
FspBI	CTAG	2 cut(s)	408, 554
GlaI	GCGC	1 cut(s)	263
GluI	GCNGC	2 cut(s)	61, 333
GsaI	CCCAGC	1 cut(s)	404
HaeIII	GGCC	2 cut(s)	395, 570
HhaI	GCGC	1 cut(s)	264
Hin1I	GRCGYC	1 cut(s)	458
Hin1II	CATG	2 cut(s)	137, 532
Hin6I	GCGC	1 cut(s)	262
HinP1I	GCGC	1 cut(s)	262
HinfI	GANTC	4 cut(s)	74, 286, 599, 606
Hpy166II	GTNNAC	2 cut(s)	89, 526
Hpy188I	TCNGA	2 cut(s)	171, 611
Hpy188III	TCNNGA	5 cut(s)	14, 146, 185, 470, 603
Hpy8I	GTNNAC	2 cut(s)	89, 526
HpyAV	CCTTC	3 cut(s)	200, 409, 421
HpyCH4IV	ACGT	1 cut(s)	458
HpyCH4V	TGCA	2 cut(s)	374, 526
HpyF10VI	GCNNNNNNNGC	4 cut(s)	57, 268, 341, 401
HpySE526I	ACGT	1 cut(s)	458
Hsp92I	GRCGYC	1 cut(s)	458
Hsp92II	CATG	2 cut(s)	137, 532
HspAI	GCGC	1 cut(s)	262
Kzo9I	GATC	6 cut(s)	10, 136, 151, 236, 307, 466
LmnI	GCTCC	3 cut(s)	130, 207, 409
Lsp1109I	GCAGC	1 cut(s)	319
LweI	GCATC	1 cut(s)	169
MaeI	CTAG	2 cut(s)	408, 554
MaeII	ACGT	1 cut(s)	458
MalI	GATC	6 cut(s)	12, 138, 153, 238, 309, 468
MboI	GATC	6 cut(s)	10, 136, 151, 236, 307, 466
MboII	GAAGA	2 cut(s)	589, 592
MflI	RGATCY	2 cut(s)	307, 466
MhlI	GDGCHC	2 cut(s)	528, 572
MlsI	TGGCCA	1 cut(s)	395
MluCI	AATT	1 cut(s)	449
MluNI	TGGCCA	1 cut(s)	395
MlyI	GAGTC	1 cut(s)	68
MnlI	CCTC	9 cut(s)	10, 62, 64, 99, 165, 322, 493, 532, 554
Mox20I	TGGCCA	1 cut(s)	395
MroXI	GAANNNNTTC	1 cut(s)	215
MscI	TGGCCA	1 cut(s)	395
Msp20I	TGGCCA	1 cut(s)	395
MspR9I	CCNGG	1 cut(s)	346
MvaI	CCWGG	1 cut(s)	346
MvnI	CGCG	1 cut(s)	264
MwoI	GCNNNNNNNGC	4 cut(s)	57, 268, 341, 401
NdeII	GATC	6 cut(s)	10, 136, 151, 236, 307, 466
NlaIII	CATG	2 cut(s)	137, 532
NlaIV	GGNNCC	4 cut(s)	188, 257, 367, 570
PcsI	WCGNNNNNNNCGW	1 cut(s)	190
PdmI	GAANNNNTTC	1 cut(s)	215
PfeI	GAWTC	2 cut(s)	286, 599
PkrI	GCNGC	2 cut(s)	62, 334
PleI	GAGTC	1 cut(s)	68
PpsI	GAGTC	1 cut(s)	68
PpuMI	RGGWCCY	3 cut(s)	187, 256, 541
PshAI	GACNNNNGTC	1 cut(s)	78
Psp5II	RGGWCCY	3 cut(s)	187, 256, 541
Psp6I	CCWGG	1 cut(s)	344
PspFI	CCCAGC	1 cut(s)	400
PspGI	CCWGG	1 cut(s)	344
PspN4I	GGNNCC	4 cut(s)	188, 257, 367, 570
PspOMI	GGGCCC	1 cut(s)	568
PspPI	GGNCC	6 cut(s)	46, 187, 256, 541, 568, 569
PspPPI	RGGWCCY	3 cut(s)	187, 256, 541
PsuI	RGATCY	2 cut(s)	307, 466
RsaI	GTAC	1 cut(s)	280
RsaNI	GTAC	1 cut(s)	279
SatI	GCNGC	2 cut(s)	61, 333
Sau3AI	GATC	6 cut(s)	10, 136, 151, 236, 307, 466
Sau96I	GGNCC	6 cut(s)	46, 187, 256, 541, 568, 569
SchI	GAGTC	1 cut(s)	68
ScrFI	CCNGG	1 cut(s)	346
SduI	GDGCHC	2 cut(s)	528, 572
SfaNI	GCATC	1 cut(s)	169
SinI	GGWCC	4 cut(s)	46, 187, 256, 541
SmlI	CTYRAG	2 cut(s)	156, 545
SmoI	CTYRAG	2 cut(s)	156, 545
Sse9I	AATT	1 cut(s)	449
SsiI	CCGC	3 cut(s)	39, 49, 60
SspMI	CTAG	2 cut(s)	408, 554
StyD4I	CCNGG	1 cut(s)	344
StyI	CCWWGG	2 cut(s)	462, 572
TaiI	ACGT	1 cut(s)	461
TaqI	TCGA	4 cut(s)	13, 177, 193, 235
TasI	AATT	1 cut(s)	449
TauI	GCSGC	1 cut(s)	63
TfiI	GAWTC	2 cut(s)	286, 599
TscAI	CASTG	1 cut(s)	447
TseI	GCWGC	1 cut(s)	332
TspDTI	ATGAA	4 cut(s)	299, 314, 426, 462
TspRI	CASTG	1 cut(s)	447
VneI	GTGCAC	1 cut(s)	524
VpaK11BI	GGWCC	4 cut(s)	46, 187, 256, 541
XapI	RAATTY	1 cut(s)	449
XmiI	GTMKAC	1 cut(s)	88
XmnI	GAANNNNTTC	1 cut(s)	215
XspI	CTAG	2 cut(s)	408, 554
ZraI	GACGTC	1 cut(s)	459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.