Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006567

Physical Location & Seq

Genomic Coordinates Reverse (-)

19744404 .. 19746192

Gene Structure 1789 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G48680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGTATTCTGATCTAGTGGTGGCTGAAACTAAAATCAGCAAAACGTTCAAGAACCGTCTCAATGGTGGTTCCGGTGACTTCTCTTCTCGCGGCAAACAACAACAAGTCACAAGGAAGAGAGGAAGGCAAGATGATGATAAGTGGGAGCATGATCTTTTCGAAGACGATGACGAGCCTCGGCTTTCAAAACGTAGAGTTGACCCTAAAGATCTTCGCTTGAAGCTCCAAAAGAAACGTCATGGCTCGCAAATTGGTGGACGAGTATTTAGTGTAAGCGTGGCGGATCTACGAGATAAGTTATCCAGGACAGTGAATCCACAAACAAAGAACAGTAAAAGGGAGGCTGTTAGACCAGCCATAAAGAAGGTTTCAGTGGGAACCAAACCCGAGACTAGAGCGGCTCCGAATAGAGCTACCAAGAAGGATCCACAGCAGAATGATGCATCGGTTGATAGCTTCCTGGAATCATTGGGTCTCGAGAAATATTCGACTGCATTTCAAGTGGAAGAAGTTGATATGGATGCTCTTAGGCATATGACAGATGATGACCTCAAAGCTTTGCTCATACCAATGGGACCTAGGAAGAAGATACTTCTTGCTTTGGGAGATAACCGTGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAM_1

Protein Analysis

206

Amino Acids

23.3

Weight (kDa)

9.81

Isoelectric Point (pI)

34.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAM_1	PF00536	146 - 201	2.3e-15	SAM domain (Sterile alpha motif)
SAM_2	PF07647	148 - 203	2.6e-08	SAM domain (Sterile alpha motif)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006567)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07170 AT3G07170 AT5G48680
fragaria_vesca	FvH4_2g18710 FvH4_2g18710 FvH4_2g18710 FvH4_5g09350
malus_domestica	MD05G1172900.v1.1 MD10G1161300.v1.1
prunus_persica	Prupe.8G200300_v2.0.a1
pyrus_communis	pycom05g15950 pycom10g13930
rosa_chinensis	RchiOBHm_Chr6g0284331
rosa_laevigata	RLG00000012751
rosa_multiflora	Rmu_sc0002698.1_g000013
rosa_roxburghii	Rroxscaffold_7G00184740
rosa_rugosa	Rorug06G0162300 Rorug06G0162300 Rorug06G0162400 Rorug06G0162500
rosa_samantha	Rh6AG275200 Rh6BG275700 Rh6CG277400 Rh6CG277600 Rh6DG270400
rosa_wichuraiana	Rw6G023680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	398
AccII	CGCG	1 cut(s)	90
AciI	CCGC	3 cut(s)	90, 281, 398
AclI	AACGTT	1 cut(s)	44
AclWI	GGATC	3 cut(s)	291, 419, 432
AgsI	TTSAA	4 cut(s)	49, 186, 220, 500
AjnI	CCWGG	2 cut(s)	302, 459
AluBI	AGCT	4 cut(s)	223, 413, 456, 557
AluI	AGCT	4 cut(s)	223, 413, 456, 557
Alw26I	GTCTC	3 cut(s)	62, 383, 479
AlwI	GGATC	3 cut(s)	291, 419, 432
Ama87I	CYCGRG	2 cut(s)	386, 476
ArsI	GACNNNNNNTTYG	2 cut(s)	220, 252
AspA2I	CCTAGG	1 cut(s)	578
AspS9I	GGNCC	1 cut(s)	575
AsuHPI	GGTGA	1 cut(s)	86
AsuII	TTCGAA	1 cut(s)	159
AvaI	CYCGRG	2 cut(s)	386, 476
AvaII	GGWCC	1 cut(s)	575
AvrII	CCTAGG	1 cut(s)	578
BamHI	GGATCC	1 cut(s)	424
BbsI	GAAGAC	1 cut(s)	168
BciT130I	CCWGG	2 cut(s)	304, 461
BcoDI	GTCTC	3 cut(s)	62, 383, 479
BfaI	CTAG	3 cut(s)	14, 393, 579
BglII	AGATCT	1 cut(s)	208
BisI	GCNGC	2 cut(s)	91, 399
BlnI	CCTAGG	1 cut(s)	578
BlsI	GCNGC	2 cut(s)	92, 400
Bme1390I	CCNGG	2 cut(s)	304, 461
Bme18I	GGWCC	1 cut(s)	575
BmeT110I	CYCGRG	2 cut(s)	386, 476
BmgT120I	GGNCC	1 cut(s)	575
BmiI	GGNNCC	5 cut(s)	70, 379, 402, 426, 576
BmrFI	CCNGG	2 cut(s)	304, 461
BmsI	GCATC	3 cut(s)	430, 452, 511
BpiI	GAAGAC	1 cut(s)	168
Bpu14I	TTCGAA	1 cut(s)	159
BsaI	GGTCTC	1 cut(s)	479
BsaJI	CCNNGG	3 cut(s)	176, 578, 613
BsaWI	WCCGGW	1 cut(s)	71
BseBI	CCWGG	2 cut(s)	304, 461
BseDI	CCNNGG	3 cut(s)	176, 578, 613
BseGI	GGATG	1 cut(s)	526
Bsh1236I	CGCG	1 cut(s)	90
BsiHKCI	CYCGRG	2 cut(s)	386, 476
BsiSI	CCGG	1 cut(s)	72
BslFI	GGGAC	1 cut(s)	588
BsmAI	GTCTC	3 cut(s)	62, 383, 479
BsmBI	CGTCTC	1 cut(s)	62
BsmFI	GGGAC	1 cut(s)	588
Bso31I	GGTCTC	1 cut(s)	479
BsoBI	CYCGRG	2 cut(s)	386, 476
Bsp119I	TTCGAA	1 cut(s)	159
Bsp143I	GATC	5 cut(s)	10, 151, 208, 283, 424
BspACI	CCGC	3 cut(s)	90, 281, 398
BspFNI	CGCG	1 cut(s)	90
BspLI	GGNNCC	5 cut(s)	70, 379, 402, 426, 576
BspPI	GGATC	3 cut(s)	291, 419, 432
BspT104I	TTCGAA	1 cut(s)	159
BspTNI	GGTCTC	1 cut(s)	479
BsrBI	CCGCTC	1 cut(s)	398
BssECI	CCNNGG	3 cut(s)	176, 578, 613
BssMI	GATC	5 cut(s)	10, 151, 208, 283, 424
BssT1I	CCWWGG	1 cut(s)	578
Bst2UI	CCWGG	2 cut(s)	304, 461
Bst4CI	ACNGT	4 cut(s)	56, 310, 332, 614
Bst6I	CTCTTC	2 cut(s)	88, 110
BstBI	TTCGAA	1 cut(s)	159
BstC8I	GCNNGC	1 cut(s)	245
BstDEI	CTNAG	1 cut(s)	527
BstDSI	CCRYGG	1 cut(s)	613
BstF5I	GGATG	1 cut(s)	526
BstFNI	CGCG	1 cut(s)	90
BstKTI	GATC	5 cut(s)	13, 154, 211, 286, 427
BstMAI	GTCTC	3 cut(s)	62, 383, 479
BstMBI	GATC	5 cut(s)	10, 151, 208, 283, 424
BstNI	CCWGG	2 cut(s)	304, 461
BstSCI	CCNGG	2 cut(s)	302, 459
BstUI	CGCG	1 cut(s)	90
BstV2I	GAAGAC	1 cut(s)	168
BstX2I	RGATCY	3 cut(s)	208, 283, 424
BstYI	RGATCY	3 cut(s)	208, 283, 424
BtgI	CCRYGG	1 cut(s)	613
BtsCI	GGATG	1 cut(s)	526
BtsIMutI	CAGTG	2 cut(s)	315, 378
Cac8I	GCNNGC	1 cut(s)	245
Cfr13I	GGNCC	1 cut(s)	575
CviAII	CATG	2 cut(s)	149, 239
DdeI	CTNAG	1 cut(s)	527
DpnI	GATC	5 cut(s)	12, 153, 210, 285, 426
DpnII	GATC	5 cut(s)	10, 151, 208, 283, 424
Eam1104I	CTCTTC	2 cut(s)	88, 110
EarI	CTCTTC	2 cut(s)	88, 110
EciI	GGCGGA	1 cut(s)	296
Eco130I	CCWWGG	1 cut(s)	578
Eco31I	GGTCTC	1 cut(s)	479
Eco47I	GGWCC	1 cut(s)	575
Eco88I	CYCGRG	2 cut(s)	386, 476
EcoO109I	RGGNCCY	1 cut(s)	575
EcoRII	CCWGG	2 cut(s)	302, 459
EcoT14I	CCWWGG	1 cut(s)	578
EcoT22I	ATGCAT	1 cut(s)	445
ErhI	CCWWGG	1 cut(s)	578
Esp3I	CGTCTC	1 cut(s)	62
FaeI	CATG	2 cut(s)	152, 242
FaiI	YATR	7 cut(s)	150, 240, 359, 518, 534, 536, 566
FaqI	GGGAC	1 cut(s)	588
FatI	CATG	2 cut(s)	148, 238
FauNDI	CATATG	1 cut(s)	534
Fnu4HI	GCNGC	2 cut(s)	91, 399
FokI	GGATG	1 cut(s)	533
Fsp4HI	GCNGC	2 cut(s)	91, 399
FspBI	CTAG	3 cut(s)	14, 393, 579
GluI	GCNGC	2 cut(s)	91, 399
HapII	CCGG	1 cut(s)	72
Hin1II	CATG	2 cut(s)	152, 242
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HindIII	AAGCTT	1 cut(s)	555
HinfI	GANTC	2 cut(s)	313, 464
HpaII	CCGG	1 cut(s)	72
HphI	GGTGA	1 cut(s)	86
Hpy166II	GTNNAC	2 cut(s)	199, 257
Hpy188I	TCNGA	2 cut(s)	10, 405
Hpy188III	TCNNGA	3 cut(s)	49, 476, 478
Hpy8I	GTNNAC	2 cut(s)	199, 257
HpyAV	CCTTC	3 cut(s)	117, 358, 415
HpyCH4III	ACNGT	4 cut(s)	56, 310, 332, 614
HpyCH4IV	ACGT	3 cut(s)	44, 190, 235
HpyCH4V	TGCA	2 cut(s)	443, 494
HpyF3I	CTNAG	1 cut(s)	527
HpySE526I	ACGT	3 cut(s)	44, 190, 235
Hsp92II	CATG	2 cut(s)	152, 242
Kzo9I	GATC	5 cut(s)	10, 151, 208, 283, 424
LmnI	GCTCC	3 cut(s)	145, 228, 406
LpnPI	CCDG	6 cut(s)	85, 289, 316, 366, 446, 473
LweI	GCATC	3 cut(s)	430, 452, 511
MaeI	CTAG	3 cut(s)	14, 393, 579
MaeII	ACGT	3 cut(s)	44, 190, 235
MaeIII	GTNAC	2 cut(s)	74, 106
MalI	GATC	5 cut(s)	12, 153, 210, 285, 426
MbiI	CCGCTC	1 cut(s)	398
MboI	GATC	5 cut(s)	10, 151, 208, 283, 424
MboII	GAAGA	7 cut(s)	75, 127, 173, 203, 518, 595, 598
MflI	RGATCY	3 cut(s)	208, 283, 424
MluCI	AATT	1 cut(s)	249
MnlI	CCTC	4 cut(s)	113, 186, 334, 560
Mph1103I	ATGCAT	1 cut(s)	445
MslI	CAYNNNNRTG	1 cut(s)	569
MspI	CCGG	1 cut(s)	72
MspR9I	CCNGG	2 cut(s)	304, 461
MvaI	CCWGG	2 cut(s)	304, 461
MvnI	CGCG	1 cut(s)	90
NdeI	CATATG	1 cut(s)	534
NdeII	GATC	5 cut(s)	10, 151, 208, 283, 424
NlaIII	CATG	2 cut(s)	152, 242
NlaIV	GGNNCC	5 cut(s)	70, 379, 402, 426, 576
NmeAIII	GCCGAG	1 cut(s)	157
NmuCI	GTSAC	2 cut(s)	74, 106
NsiI	ATGCAT	1 cut(s)	445
NspV	TTCGAA	1 cut(s)	159
PaeR7I	CTCGAG	1 cut(s)	476
PfeI	GAWTC	2 cut(s)	313, 464
PfoI	TCCNGGA	2 cut(s)	302, 459
PkrI	GCNGC	2 cut(s)	92, 400
PpuMI	RGGWCCY	1 cut(s)	575
Psp1406I	AACGTT	1 cut(s)	44
Psp5II	RGGWCCY	1 cut(s)	575
Psp6I	CCWGG	2 cut(s)	302, 459
PspGI	CCWGG	2 cut(s)	302, 459
PspN4I	GGNNCC	5 cut(s)	70, 379, 402, 426, 576
PspPI	GGNCC	1 cut(s)	575
PspPPI	RGGWCCY	1 cut(s)	575
PsuI	RGATCY	3 cut(s)	208, 283, 424
RseI	CAYNNNNRTG	1 cut(s)	569
SatI	GCNGC	2 cut(s)	91, 399
Sau3AI	GATC	5 cut(s)	10, 151, 208, 283, 424
Sau96I	GGNCC	1 cut(s)	575
ScrFI	CCNGG	2 cut(s)	304, 461
SfaNI	GCATC	3 cut(s)	430, 452, 511
Sfr274I	CTCGAG	1 cut(s)	476
SfuI	TTCGAA	1 cut(s)	159
SinI	GGWCC	1 cut(s)	575
SlaI	CTCGAG	1 cut(s)	476
SmiMI	CAYNNNNRTG	1 cut(s)	569
SmlI	CTYRAG	1 cut(s)	476
SmoI	CTYRAG	1 cut(s)	476
Sse9I	AATT	1 cut(s)	249
SsiI	CCGC	3 cut(s)	90, 281, 398
SspI	AATATT	1 cut(s)	485
SspMI	CTAG	3 cut(s)	14, 393, 579
StyD4I	CCNGG	2 cut(s)	302, 459
StyI	CCWWGG	1 cut(s)	578
TaaI	ACNGT	4 cut(s)	56, 310, 332, 614
TaiI	ACGT	3 cut(s)	47, 193, 238
TaqI	TCGA	3 cut(s)	159, 477, 488
TasI	AATT	1 cut(s)	249
TauI	GCSGC	2 cut(s)	93, 401
TfiI	GAWTC	2 cut(s)	313, 464
TscAI	CASTG	2 cut(s)	315, 378
TseFI	GTSAC	2 cut(s)	74, 106
Tsp45I	GTSAC	2 cut(s)	74, 106
TspRI	CASTG	2 cut(s)	315, 378
VpaK11BI	GGWCC	1 cut(s)	575
XhoI	CTCGAG	1 cut(s)	476
XmaJI	CCTAGG	1 cut(s)	578
XspI	CTAG	3 cut(s)	14, 393, 579
Zsp2I	ATGCAT	1 cut(s)	445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.