Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0006567

Physical Location & Seq

Genomic Coordinates Forward (+)

21995910 .. 21998860

Gene Structure 2951 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012751

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGTATGCTGATCGAGAAGAAGCTGATTCCAAGAGGTCCATTAAAGAGCGTCTCAATGGCAACAACTTCAGGGATCGTAGACAAGTAGCCGGCAAAAGGCAGAGACAAGATGACAAGTGGGAGCATGATCTTTATGATGATAACGAACCTCAATTATCAAATCGCAAAGTTGGGGACCTTCGTTTGAAGCTCCAGAGGAAAAGTTTCAAACAAACATCTGGAACAAGATCTGTTTCAGGTGTAAGGGACCTGCGGGAAAAGCTATCCGGTACTATGAAGCCACAACCAGTGAATGCCGATCCACCAAGGTCAAAAGCAGAGGCTGCTAAATCAGCAAGGAGAACCATTGCTGTTGCGGCACCTGCACCAGAGACTCACAAAGTTGCCAACACAACATCTAGGAAGAAGGCTTCAAAAAAGGTTGGCACATCAGTGGACGAATTTTTGACGTCCTTGGATCTTGAAAAGTATTCCATTACATTTCAGGCAGAGGAAGTTGATATGACGGCTCTTGTGCACATGACTGATGAGGATCTCAAGGCTCTAGGAATACCAATGGGTCCAAGGAAGAAGATTCTTTTGGCATTGGAATCAAGAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAM_1

Protein Analysis

201

Amino Acids

22.59

Weight (kDa)

9.84

Isoelectric Point (pI)

41.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAM_1	PF00536	144 - 197	4.1e-15	SAM domain (Sterile alpha motif)
SAM_2	PF07647	144 - 197	2.4e-09	SAM domain (Sterile alpha motif)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006567)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07170 AT3G07170 AT5G48680
fragaria_vesca	FvH4_2g18710 FvH4_2g18710 FvH4_2g18710 FvH4_5g09350
malus_domestica	MD05G1172900.v1.1 MD10G1161300.v1.1
prunus_persica	Prupe.8G200300_v2.0.a1
pyrus_communis	pycom05g15950 pycom10g13930
rosa_chinensis	RchiOBHm_Chr6g0284331
rosa_laevigata	RLG00000012751
rosa_multiflora	Rmu_sc0002698.1_g000013
rosa_roxburghii	Rroxscaffold_7G00184740
rosa_rugosa	Rorug06G0162300 Rorug06G0162300 Rorug06G0162400 Rorug06G0162500
rosa_samantha	Rh6AG275200 Rh6BG275700 Rh6CG277400 Rh6CG277600 Rh6DG270400
rosa_wichuraiana	Rw6G023680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	370
AatII	GACGTC	1 cut(s)	452
Acc36I	ACCTGC	2 cut(s)	258, 370
AccB1I	GGYRCC	1 cut(s)	358
AccI	GTMKAC	1 cut(s)	79
AciI	CCGC	2 cut(s)	253, 356
AclWI	GGATC	4 cut(s)	81, 293, 465, 540
AcsI	RAATTY	1 cut(s)	440
AcuI	CTGAAG	1 cut(s)	52
AcyI	GRCGYC	1 cut(s)	449
AfaI	GTAC	1 cut(s)	271
AfiI	CCNNNNNNNGG	1 cut(s)	96
AgsI	TTSAA	4 cut(s)	187, 208, 414, 464
AjuI	GAANNNNNNNTTGG	2 cut(s)	563, 595
AleI	CACNNNNGTG	1 cut(s)	431
AluBI	AGCT	3 cut(s)	23, 190, 262
AluI	AGCT	3 cut(s)	23, 190, 262
Alw21I	GWGCWC	1 cut(s)	519
Alw26I	GTCTC	3 cut(s)	56, 97, 365
Alw44I	GTGCAC	1 cut(s)	515
AlwI	GGATC	4 cut(s)	81, 293, 465, 540
AlwNI	CAGNNNCTG	1 cut(s)	323
ApaLI	GTGCAC	1 cut(s)	515
ApeKI	GCWGC	1 cut(s)	323
ApoI	RAATTY	1 cut(s)	440
Asp700I	GAANNNNTTC	1 cut(s)	203
AspS9I	GGNCC	4 cut(s)	36, 175, 247, 560
AvaII	GGWCC	4 cut(s)	36, 175, 247, 560
BaeGI	GKGCMC	1 cut(s)	519
BanI	GGYRCC	1 cut(s)	358
Bbv12I	GWGCWC	1 cut(s)	519
BbvI	GCAGC	1 cut(s)	310
BceAI	ACGGC	1 cut(s)	522
BcoDI	GTCTC	3 cut(s)	56, 97, 365
BfaI	CTAG	2 cut(s)	399, 545
BfuAI	ACCTGC	2 cut(s)	258, 370
BglII	AGATCT	1 cut(s)	227
BisI	GCNGC	2 cut(s)	324, 357
BlsI	GCNGC	2 cut(s)	325, 358
Bme18I	GGWCC	4 cut(s)	36, 175, 247, 560
BmgT120I	GGNCC	4 cut(s)	36, 175, 247, 560
BmiI	GGNNCC	4 cut(s)	176, 248, 360, 561
BpmI	CTGGAG	1 cut(s)	176
BpuEI	CTTGAG	1 cut(s)	521
BsaBI	GATNNNNATC	1 cut(s)	531
BsaHI	GRCGYC	1 cut(s)	449
BsaJI	CCNNGG	3 cut(s)	305, 453, 563
BsaWI	WCCGGW	1 cut(s)	266
Bsc4I	CCNNNNNNNGG	1 cut(s)	96
Bse118I	RCCGGY	1 cut(s)	89
Bse1I	ACTGG	1 cut(s)	287
Bse3DI	GCAATG	1 cut(s)	345
Bse8I	GATNNNNATC	1 cut(s)	531
BseDI	CCNNGG	3 cut(s)	305, 453, 563
BseJI	GATNNNNATC	1 cut(s)	531
BseLI	CCNNNNNNNGG	1 cut(s)	96
BseMI	GCAATG	1 cut(s)	345
BseNI	ACTGG	1 cut(s)	287
BseSI	GKGCMC	1 cut(s)	519
BseXI	GCAGC	1 cut(s)	310
BsgI	GTGCAG	1 cut(s)	348
BshNI	GGYRCC	1 cut(s)	358
BsiHKAI	GWGCWC	1 cut(s)	519
BsiSI	CCGG	2 cut(s)	90, 267
BslFI	GGGAC	2 cut(s)	188, 260
BslI	CCNNNNNNNGG	1 cut(s)	96
BsmAI	GTCTC	3 cut(s)	56, 97, 365
BsmBI	CGTCTC	1 cut(s)	56
BsmFI	GGGAC	2 cut(s)	188, 260
BsmI	GAATGC	1 cut(s)	298
Bsp1286I	GDGCHC	1 cut(s)	519
Bsp143I	GATC	7 cut(s)	10, 73, 127, 227, 298, 457, 532
BspACI	CCGC	2 cut(s)	253, 356
BspLI	GGNNCC	4 cut(s)	176, 248, 360, 561
BspMI	ACCTGC	2 cut(s)	258, 370
BspPI	GGATC	4 cut(s)	81, 293, 465, 540
BspT107I	GGYRCC	1 cut(s)	358
BsrDI	GCAATG	1 cut(s)	345
BsrFI	RCCGGY	1 cut(s)	89
BsrI	ACTGG	1 cut(s)	287
BssAI	RCCGGY	1 cut(s)	89
BssECI	CCNNGG	3 cut(s)	305, 453, 563
BssMI	GATC	7 cut(s)	10, 73, 127, 227, 298, 457, 532
BssNI	GRCGYC	1 cut(s)	449
BssT1I	CCWWGG	3 cut(s)	305, 453, 563
BstACI	GRCGYC	1 cut(s)	449
BstAPI	GCANNNNNTGC	1 cut(s)	323
BstC8I	GCNNGC	1 cut(s)	91
BstKTI	GATC	7 cut(s)	13, 76, 130, 230, 301, 460, 535
BstMAI	GTCTC	3 cut(s)	56, 97, 365
BstMBI	GATC	7 cut(s)	10, 73, 127, 227, 298, 457, 532
BstMWI	GCNNNNNNNGC	5 cut(s)	259, 323, 332, 356, 362
BstSLI	GKGCMC	1 cut(s)	519
BstV1I	GCAGC	1 cut(s)	310
BstX2I	RGATCY	3 cut(s)	227, 457, 532
BstYI	RGATCY	3 cut(s)	227, 457, 532
BtsIMutI	CAGTG	2 cut(s)	294, 438
BveI	ACCTGC	2 cut(s)	258, 370
Cac8I	GCNNGC	1 cut(s)	91
CaiI	CAGNNNCTG	1 cut(s)	323
Cfr10I	RCCGGY	1 cut(s)	89
Cfr13I	GGNCC	4 cut(s)	36, 175, 247, 560
CseI	GACGC	1 cut(s)	38
Csp6I	GTAC	1 cut(s)	270
CviAII	CATG	2 cut(s)	125, 520
CviJI	RGCY	9 cut(s)	23, 89, 190, 262, 280, 323, 410, 509, 542
CviKI_1	RGCY	9 cut(s)	23, 89, 190, 262, 280, 323, 410, 509, 542
CviQI	GTAC	1 cut(s)	270
DpnI	GATC	7 cut(s)	12, 75, 129, 229, 300, 459, 534
DpnII	GATC	7 cut(s)	10, 73, 127, 227, 298, 457, 532
Eco130I	CCWWGG	3 cut(s)	305, 453, 563
Eco47I	GGWCC	4 cut(s)	36, 175, 247, 560
Eco57I	CTGAAG	1 cut(s)	52
EcoO109I	RGGNCCY	2 cut(s)	175, 247
EcoT14I	CCWWGG	3 cut(s)	305, 453, 563
ErhI	CCWWGG	3 cut(s)	305, 453, 563
Esp3I	CGTCTC	1 cut(s)	56
FaeI	CATG	2 cut(s)	128, 523
FaiI	YATR	6 cut(s)	6, 126, 135, 275, 503, 521
FaqI	GGGAC	2 cut(s)	188, 260
FatI	CATG	2 cut(s)	124, 519
FauI	CCCGC	1 cut(s)	246
FblI	GTMKAC	1 cut(s)	79
Fnu4HI	GCNGC	2 cut(s)	324, 357
Fsp4HI	GCNGC	2 cut(s)	324, 357
FspBI	CTAG	2 cut(s)	399, 545
GluI	GCNGC	2 cut(s)	324, 357
GsuI	CTGGAG	1 cut(s)	176
HapII	CCGG	2 cut(s)	90, 267
HgaI	GACGC	1 cut(s)	38
Hin1I	GRCGYC	1 cut(s)	449
Hin1II	CATG	2 cut(s)	128, 523
HinfI	GANTC	4 cut(s)	26, 373, 574, 590
HpaII	CCGG	2 cut(s)	90, 267
Hpy166II	GTNNAC	3 cut(s)	80, 436, 517
Hpy188III	TCNNGA	5 cut(s)	14, 193, 219, 461, 594
Hpy8I	GTNNAC	3 cut(s)	80, 436, 517
HpyAV	CCTTC	2 cut(s)	188, 400
HpyCH4IV	ACGT	1 cut(s)	449
HpyCH4V	TGCA	2 cut(s)	365, 517
HpyF10VI	GCNNNNNNNGC	5 cut(s)	259, 323, 332, 356, 362
HpySE526I	ACGT	1 cut(s)	449
Hsp92I	GRCGYC	1 cut(s)	449
Hsp92II	CATG	2 cut(s)	128, 523
KroI	GCCGGC	1 cut(s)	89
KroNI	GCCGGC	1 cut(s)	91
Kzo9I	GATC	7 cut(s)	10, 73, 127, 227, 298, 457, 532
LmnI	GCTCC	2 cut(s)	121, 195
Lsp1109I	GCAGC	1 cut(s)	310
MaeI	CTAG	2 cut(s)	399, 545
MaeII	ACGT	1 cut(s)	449
MalI	GATC	7 cut(s)	12, 75, 129, 229, 300, 459, 534
MboI	GATC	7 cut(s)	10, 73, 127, 227, 298, 457, 532
MboII	GAAGA	4 cut(s)	29, 415, 580, 583
MflI	RGATCY	3 cut(s)	227, 457, 532
MhlI	GDGCHC	1 cut(s)	519
MluCI	AATT	2 cut(s)	152, 440
MlyI	GAGTC	1 cut(s)	367
MnlI	CCTC	6 cut(s)	27, 159, 189, 313, 484, 523
MroNI	GCCGGC	1 cut(s)	89
MroXI	GAANNNNTTC	1 cut(s)	203
MseI	TTAA	1 cut(s)	42
MslI	CAYNNNNRTG	1 cut(s)	431
MspI	CCGG	2 cut(s)	90, 267
Mva1269I	GAATGC	1 cut(s)	298
MwoI	GCNNNNNNNGC	5 cut(s)	259, 323, 332, 356, 362
NaeI	GCCGGC	1 cut(s)	91
NdeII	GATC	7 cut(s)	10, 73, 127, 227, 298, 457, 532
NgoMIV	GCCGGC	1 cut(s)	89
NlaIII	CATG	2 cut(s)	128, 523
NlaIV	GGNNCC	4 cut(s)	176, 248, 360, 561
OliI	CACNNNNGTG	1 cut(s)	431
PaqCI	CACCTGC	1 cut(s)	370
PctI	GAATGC	1 cut(s)	298
PdiI	GCCGGC	1 cut(s)	91
PdmI	GAANNNNTTC	1 cut(s)	203
PfeI	GAWTC	3 cut(s)	26, 574, 590
PkrI	GCNGC	2 cut(s)	325, 358
PleI	GAGTC	1 cut(s)	367
PpsI	GAGTC	1 cut(s)	367
PpuMI	RGGWCCY	2 cut(s)	175, 247
Psp5II	RGGWCCY	2 cut(s)	175, 247
PspN4I	GGNNCC	4 cut(s)	176, 248, 360, 561
PspPI	GGNCC	4 cut(s)	36, 175, 247, 560
PspPPI	RGGWCCY	2 cut(s)	175, 247
PstNI	CAGNNNCTG	1 cut(s)	323
PsuI	RGATCY	3 cut(s)	227, 457, 532
RsaI	GTAC	1 cut(s)	271
RsaNI	GTAC	1 cut(s)	270
RseI	CAYNNNNRTG	1 cut(s)	431
SaqAI	TTAA	1 cut(s)	42
SatI	GCNGC	2 cut(s)	324, 357
Sau3AI	GATC	7 cut(s)	10, 73, 127, 227, 298, 457, 532
Sau96I	GGNCC	4 cut(s)	36, 175, 247, 560
SchI	GAGTC	1 cut(s)	367
SduI	GDGCHC	1 cut(s)	519
SinI	GGWCC	4 cut(s)	36, 175, 247, 560
SmiMI	CAYNNNNRTG	1 cut(s)	431
SmlI	CTYRAG	1 cut(s)	536
SmoI	CTYRAG	1 cut(s)	536
Sse9I	AATT	2 cut(s)	152, 440
SsiI	CCGC	2 cut(s)	253, 356
SspMI	CTAG	2 cut(s)	399, 545
StyI	CCWWGG	3 cut(s)	305, 453, 563
TaiI	ACGT	1 cut(s)	452
TaqI	TCGA	1 cut(s)	13
TasI	AATT	2 cut(s)	152, 440
TauI	GCSGC	1 cut(s)	359
TfiI	GAWTC	3 cut(s)	26, 574, 590
Tru1I	TTAA	1 cut(s)	42
Tru9I	TTAA	1 cut(s)	42
TscAI	CASTG	2 cut(s)	294, 438
TseI	GCWGC	1 cut(s)	323
TspDTI	ATGAA	1 cut(s)	290
TspRI	CASTG	2 cut(s)	294, 438
VneI	GTGCAC	1 cut(s)	515
VpaK11BI	GGWCC	4 cut(s)	36, 175, 247, 560
XapI	RAATTY	1 cut(s)	440
XmiI	GTMKAC	1 cut(s)	79
XmnI	GAANNNNTTC	1 cut(s)	203
XspI	CTAG	2 cut(s)	399, 545
ZraI	GACGTC	1 cut(s)	450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.