Rorug06G0162400

Ankyrin repeat and SAM domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0006567
Physical Location & Seq
Reverse (-)
23183809 .. 23184498
690 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0162400.1

Sequence Viewer

Length: 465 bp
ATGGCTCTAAGAATGCATCTCCTTTCCCCCAAAGCCCCCCGACAACCTCCAAAATTCCACAGCAGTCCCTTCCCCTCCACCAGACCCAAAACCCGAACAATCCAATGCAAAAAGAAGAGCATCAGCGATGCCGAACTCGCATCAGATTTGTCAAAGATGACCACCCTTTTCGCGCAGAGAGACGAAGCCATGAACAAGAGCAGAGGGCTTCTCTTCACAGAGCTGTGCCAATTCCTGGATTCAAAACCAGAGGAAGTCAAGAAGAAATGGGGGAAATTGGATGAGGACGAGAAGCGGGTTTTGGTTAAAGGCTTTGTTTCAGAGTGGGGTGTCAATTTTCACCCACTGTCTGCAAAATCTGTTCAAGATTTGGTCGAGGAGCACCTGCAGCACCGAAACCCACCTGCAAAATCCCCTTTGTTTCCTGGTTTAAAGAGGATGATGGGTTTCTCAGAAGACAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAM_1

Protein Analysis

154

Amino Acids

17.62

Weight (kDa)

9.69

Isoelectric Point (pI)

54.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7026 PF22950 60 - 109 6.3e-26 Domain of unknown function (DUF7026)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 393, 412
Acc36I ACCTGC 2 cut(s) 393, 412
AccB7I CCANNNNNTGG 1 cut(s) 235
AccII CGCG 1 cut(s) 173
AciI CCGC 1 cut(s) 295
AcsI RAATTY 1 cut(s) 53
AfiI CCNNNNNNNGG 1 cut(s) 235
AgsI TTSAA 2 cut(s) 243, 365
AjnI CCWGG 2 cut(s) 234, 424
AjuI GAANNNNNNNTTGG 2 cut(s) 284, 316
AluBI AGCT 1 cut(s) 223
AluI AGCT 1 cut(s) 223
Alw21I GWGCWC 1 cut(s) 384
Alw26I GTCTC 1 cut(s) 174
ApeKI GCWGC 1 cut(s) 388
ApoI RAATTY 1 cut(s) 53
AspLEI GCGC 1 cut(s) 175
AsuHPI GGTGA 1 cut(s) 332
Bbv12I GWGCWC 1 cut(s) 384
BbvI GCAGC 1 cut(s) 400
BccI CCATC 1 cut(s) 436
BciT130I CCWGG 2 cut(s) 236, 426
BcoDI GTCTC 1 cut(s) 174
BfmI CTRYAG 1 cut(s) 386
BfuAI ACCTGC 2 cut(s) 393, 412
BisI GCNGC 1 cut(s) 389
BlsI GCNGC 1 cut(s) 390
Bme1390I CCNGG 2 cut(s) 236, 426
BmrFI CCNGG 2 cut(s) 236, 426
BmsI GCATC 4 cut(s) 25, 118, 129, 149
BplI GAGNNNNNCTC 2 cut(s) 195, 227
Bsc4I CCNNNNNNNGG 1 cut(s) 235
BseBI CCWGG 2 cut(s) 236, 426
BseGI GGATG 2 cut(s) 286, 444
BseLI CCNNNNNNNGG 1 cut(s) 235
BseMII CTCAG 1 cut(s) 465
BseRI GAGGAG 1 cut(s) 392
BseXI GCAGC 1 cut(s) 400
Bsh1236I CGCG 1 cut(s) 173
BsiHKAI GWGCWC 1 cut(s) 384
BslFI GGGAC 1 cut(s) 51
BslI CCNNNNNNNGG 1 cut(s) 235
BsmAI GTCTC 1 cut(s) 174
BsmBI CGTCTC 1 cut(s) 174
BsmFI GGGAC 1 cut(s) 51
BsmI GAATGC 1 cut(s) 18
Bsp1286I GDGCHC 1 cut(s) 384
BspACI CCGC 1 cut(s) 295
BspCNI CTCAG 1 cut(s) 464
BspFNI CGCG 1 cut(s) 173
BspMAI CTGCAG 1 cut(s) 390
BspMI ACCTGC 2 cut(s) 393, 412
BspQI GCTCTTC 1 cut(s) 110
Bst2UI CCWGG 2 cut(s) 236, 426
Bst4CI ACNGT 1 cut(s) 348
Bst6I CTCTTC 2 cut(s) 110, 218
BstDEI CTNAG 2 cut(s) 8, 451
BstF5I GGATG 2 cut(s) 286, 444
BstFNI CGCG 1 cut(s) 173
BstHHI GCGC 1 cut(s) 175
BstMAI GTCTC 1 cut(s) 174
BstMWI GCNNNNNNNGC 2 cut(s) 137, 388
BstNI CCWGG 2 cut(s) 236, 426
BstSCI CCNGG 2 cut(s) 234, 424
BstSFI CTRYAG 1 cut(s) 386
BstUI CGCG 1 cut(s) 173
BstV1I GCAGC 1 cut(s) 400
BtgZI GCGATG 1 cut(s) 141
BtsCI GGATG 2 cut(s) 286, 444
BtsIMutI CAGTG 1 cut(s) 344
BveI ACCTGC 2 cut(s) 393, 412
CfoI GCGC 1 cut(s) 175
CviAII CATG 1 cut(s) 190
CviJI RGCY 6 cut(s) 5, 35, 188, 208, 223, 312
CviKI_1 RGCY 6 cut(s) 5, 35, 188, 208, 223, 312
DdeI CTNAG 2 cut(s) 8, 451
DraI TTTAAA 1 cut(s) 432
Eam1104I CTCTTC 2 cut(s) 110, 218
EarI CTCTTC 2 cut(s) 110, 218
EcoRII CCWGG 2 cut(s) 234, 424
EcoT22I ATGCAT 1 cut(s) 18
Esp3I CGTCTC 1 cut(s) 174
FaeI CATG 1 cut(s) 193
FaiI YATR 1 cut(s) 191
FaqI GGGAC 1 cut(s) 51
FatI CATG 1 cut(s) 189
FauI CCCGC 1 cut(s) 288
Fnu4HI GCNGC 1 cut(s) 389
FokI GGATG 2 cut(s) 293, 451
Fsp4HI GCNGC 1 cut(s) 389
GlaI GCGC 1 cut(s) 174
GluI GCNGC 1 cut(s) 389
HhaI GCGC 1 cut(s) 175
Hin1II CATG 1 cut(s) 193
Hin6I GCGC 1 cut(s) 173
HinP1I GCGC 1 cut(s) 173
HinfI GANTC 1 cut(s) 239
HphI GGTGA 1 cut(s) 332
Hpy188I TCNGA 3 cut(s) 145, 322, 454
Hpy188III TCNNGA 2 cut(s) 259, 365
HpyAV CCTTC 1 cut(s) 79
HpyCH4III ACNGT 1 cut(s) 348
HpyCH4V TGCA 5 cut(s) 16, 108, 353, 388, 407
HpyF10VI GCNNNNNNNGC 2 cut(s) 137, 388
HpyF3I CTNAG 2 cut(s) 8, 451
Hsp92II CATG 1 cut(s) 193
HspAI GCGC 1 cut(s) 173
LguI GCTCTTC 1 cut(s) 110
LmnI GCTCC 1 cut(s) 379
LpnPI CCDG 8 cut(s) 94, 221, 248, 261, 398, 411, 417, 438
Lsp1109I GCAGC 1 cut(s) 400
LweI GCATC 4 cut(s) 25, 118, 129, 149
MboII GAAGA 3 cut(s) 127, 205, 274
MhlI GDGCHC 1 cut(s) 384
MluCI AATT 4 cut(s) 53, 230, 275, 334
MnlI CCTC 7 cut(s) 57, 85, 197, 244, 277, 370, 429
Mph1103I ATGCAT 1 cut(s) 18
MseI TTAA 2 cut(s) 306, 431
MspR9I CCNGG 2 cut(s) 236, 426
Mva1269I GAATGC 1 cut(s) 18
MvaI CCWGG 2 cut(s) 236, 426
MvnI CGCG 1 cut(s) 173
MwoI GCNNNNNNNGC 2 cut(s) 137, 388
NlaIII CATG 1 cut(s) 193
NsiI ATGCAT 1 cut(s) 18
PaqCI CACCTGC 2 cut(s) 393, 412
PciSI GCTCTTC 1 cut(s) 110
PctI GAATGC 1 cut(s) 18
PfeI GAWTC 1 cut(s) 239
PflMI CCANNNNNTGG 1 cut(s) 235
PfoI TCCNGGA 1 cut(s) 234
PkrI GCNGC 1 cut(s) 390
Psp6I CCWGG 2 cut(s) 234, 424
PspGI CCWGG 2 cut(s) 234, 424
PstI CTGCAG 1 cut(s) 390
SapI GCTCTTC 1 cut(s) 110
SaqAI TTAA 2 cut(s) 306, 431
SatI GCNGC 1 cut(s) 389
ScrFI CCNGG 2 cut(s) 236, 426
SduI GDGCHC 1 cut(s) 384
SetI ASST 4 cut(s) 49, 225, 387, 406
SfaNI GCATC 4 cut(s) 25, 118, 129, 149
SfcI CTRYAG 1 cut(s) 386
Sse9I AATT 4 cut(s) 53, 230, 275, 334
SsiI CCGC 1 cut(s) 295
StyD4I CCNGG 2 cut(s) 234, 424
TaaI ACNGT 1 cut(s) 348
TaqI TCGA 1 cut(s) 375
TasI AATT 4 cut(s) 53, 230, 275, 334
TfiI GAWTC 1 cut(s) 239
Tru1I TTAA 2 cut(s) 306, 431
Tru9I TTAA 2 cut(s) 306, 431
TscAI CASTG 1 cut(s) 351
TseI GCWGC 1 cut(s) 388
TspDTI ATGAA 1 cut(s) 206
TspRI CASTG 1 cut(s) 351
Van91I CCANNNNNTGG 1 cut(s) 235
XapI RAATTY 1 cut(s) 53
Zsp2I ATGCAT 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.