Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0006567

Physical Location & Seq

Genomic Coordinates Forward (+)

23180267 .. 23183603

Gene Structure 3337 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0162300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGGAGCTAAATTCCATTAAAGATGCATTTGAGCGTGTTGTTAAGAAGCAAAAGCTATCTTCGTCTAAATCCCAAGAAGTAATTCAGCAAGTTGGTCGTGAAATTGAACAGGCACTGACACAGATCCTTTCAGCTCAAGATCCTTCTGCGCCTGTTGATCAAAAATCCATCCTTGCAGAGCTTAAACTCAAACTCAGTGCAGTTGGTCCAGTCCAGCAGTTAGAAGGGTCACATAAGGAACTGAACTTAAACCTCAGCAAGTACACTAAACTCCTTGAAAGAACCTTGAATCCAGACATATCAAAGGCATACAGAGATGTTGACTTTGACTACCATATTGTGAATCAGCTCATTGCTAATCATTTTTACCGGCAAGGGTTGTTTGATCTGGGAGATGGCATAATAGATGAGGCTGGAGAACCAGAGTTAACCATTGTAAAATCTCAGTTCTCGGTGATGCATCAATTACTTGAGGCTATGAAGGTTAAGAATCTTGAGCCTGCTCTAAACTGGATCCGTGCTAACCGTGAACAACTGAATCAGAATGGTTTGAATCTTGAGCTGAAACTCCATAGTTTGCAGTTTCTGGAGATTTTACAAAATGGCACTCAAGCTGATGCACTTGTATATGCCAGGACTCACCTTGCTCCTTTTGCTTCTCCTTCCTCCTCTCACAAGGATGAGGTACTGAAGCTCATGGGTTGCCTTTTATATGCAGGAAGGCTCAACAACTCCCCTTATTCTGAGTTTACATCTCCAACTCATTGGGAGAAGGCGATGGAGGATCTTACAGGGCAGTTCTGTAGTCTCTTGGCACAGTCCTATAACAGCCCGTTGAGTATGACGATGGCTGCAGGATTTGAAGGGTTGCCTACTCTCTTGAAGCTGGCAAATGTAATGGCTGCAAAGAAGCAGGAGTGGCAAGCGATGAAACAGTTGCCAGTGCCTGTGGAGTTGGGGAAGGAGTTTCAGTTCCATTCTATATTTGTCTGTCCTGTGAGTAGAGATCAAGGCAGTGAAGACAATCCCCCCATGTTGATGCCGTGCTTGCATGTTCTCTGCAAGCAATCAATCATGAAGCTGTCGAAGAGCAGCACCAGGACATTTAAATGCCCATATTGTCCGGCAGAGGCATCAGTTGCTCAGTGCAAACAGCTACATTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAM_1

Protein Analysis

388

Amino Acids

43.55

Weight (kDa)

6.61

Isoelectric Point (pI)

42.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTLH	PF10607	149 - 293	1.3e-31	CTLH/CRA C-terminal to LisH motif domain
zf-RING_UBOX	PF13445	331 - 372	6.7e-08	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006567)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07170 AT3G07170 AT5G48680
fragaria_vesca	FvH4_2g18710 FvH4_2g18710 FvH4_2g18710 FvH4_5g09350
malus_domestica	MD05G1172900.v1.1 MD10G1161300.v1.1
prunus_persica	Prupe.8G200300_v2.0.a1
pyrus_communis	pycom05g15950 pycom10g13930
rosa_chinensis	RchiOBHm_Chr6g0284331
rosa_laevigata	RLG00000012751
rosa_multiflora	Rmu_sc0002698.1_g000013
rosa_roxburghii	Rroxscaffold_7G00184740
rosa_rugosa	Rorug06G0162300 Rorug06G0162300 Rorug06G0162400 Rorug06G0162500
rosa_samantha	Rh6AG275200 Rh6BG275700 Rh6CG277400 Rh6CG277600 Rh6DG270400
rosa_wichuraiana	Rw6G023680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	5 cut(s)	118, 134, 508, 521, 792
AcsI	RAATTY	1 cut(s)	10
AcuI	CTGAAG	1 cut(s)	710
AfaI	GTAC	2 cut(s)	263, 687
AgsI	TTSAA	6 cut(s)	107, 278, 289, 553, 863, 883
AjnI	CCWGG	2 cut(s)	632, 1097
AjuI	GAANNNNNNNTTGG	2 cut(s)	66, 98
AloI	GAACNNNNNNTCC	4 cut(s)	274, 306, 956, 988
Alw26I	GTCTC	1 cut(s)	812
AlwI	GGATC	5 cut(s)	118, 134, 508, 521, 792
AlwNI	CAGNNNCTG	3 cut(s)	115, 586, 947
ApeKI	GCWGC	3 cut(s)	851, 902, 1092
ApoI	RAATTY	1 cut(s)	10
Asp700I	GAANNNNTTC	1 cut(s)	81
AspLEI	GCGC	1 cut(s)	151
AspS9I	GGNCC	1 cut(s)	206
AsuHPI	GGTGA	2 cut(s)	466, 632
AvaII	GGWCC	1 cut(s)	206
BamHI	GGATCC	1 cut(s)	513
BbsI	GAAGAC	1 cut(s)	1026
BbvCI	CCTCAGC	1 cut(s)	254
BbvI	GCAGC	3 cut(s)	838, 889, 1104
BccI	CCATC	4 cut(s)	176, 389, 772, 841
BceAI	ACGGC	1 cut(s)	1027
BcgI	CGANNNNNNTGC	2 cut(s)	77, 111
BciT130I	CCWGG	2 cut(s)	634, 1099
BclI	TGATCA	1 cut(s)	157
BcoDI	GTCTC	1 cut(s)	812
BfmI	CTRYAG	2 cut(s)	802, 852
BisI	GCNGC	3 cut(s)	852, 903, 1093
BlsI	GCNGC	3 cut(s)	853, 904, 1094
Bme1390I	CCNGG	2 cut(s)	634, 1099
Bme18I	GGWCC	1 cut(s)	206
BmgT120I	GGNCC	1 cut(s)	206
BmiI	GGNNCC	1 cut(s)	515
BmrFI	CCNGG	2 cut(s)	634, 1099
BmsI	GCATC	6 cut(s)	13, 447, 469, 607, 1029, 1142
BpiI	GAAGAC	1 cut(s)	1026
BpmI	CTGGAG	2 cut(s)	435, 608
Bpu10I	CCTNAGC	1 cut(s)	254
BpuEI	CTTGAG	5 cut(s)	120, 491, 515, 578, 594
BsaXI	ACNNNNNCTCC	2 cut(s)	956, 986
Bse118I	RCCGGY	1 cut(s)	369
Bse1I	ACTGG	3 cut(s)	209, 515, 941
Bse3DI	GCAATG	1 cut(s)	351
BseBI	CCWGG	2 cut(s)	634, 1099
BseGI	GGATG	2 cut(s)	168, 685
BseMI	GCAATG	1 cut(s)	351
BseMII	CTCAG	5 cut(s)	208, 268, 458, 735, 1157
BseNI	ACTGG	3 cut(s)	209, 515, 941
BseRI	GAGGAG	1 cut(s)	658
BseXI	GCAGC	3 cut(s)	838, 889, 1104
BsgI	GTGCAG	1 cut(s)	219
BsiSI	CCGG	2 cut(s)	370, 1124
BsmAI	GTCTC	1 cut(s)	812
Bsp143I	GATC	7 cut(s)	123, 139, 157, 385, 513, 784, 1006
BspCNI	CTCAG	5 cut(s)	207, 267, 457, 736, 1156
BspHI	TCATGA	1 cut(s)	1074
BspLI	GGNNCC	1 cut(s)	515
BspMAI	CTGCAG	1 cut(s)	856
BspPI	GGATC	5 cut(s)	118, 134, 508, 521, 792
BspQI	GCTCTTC	1 cut(s)	1082
BsrDI	GCAATG	1 cut(s)	351
BsrFI	RCCGGY	1 cut(s)	369
BsrI	ACTGG	3 cut(s)	209, 515, 941
BssAI	RCCGGY	1 cut(s)	369
BssMI	GATC	7 cut(s)	123, 139, 157, 385, 513, 784, 1006
Bst2UI	CCWGG	2 cut(s)	634, 1099
Bst4CI	ACNGT	3 cut(s)	527, 819, 936
Bst6I	CTCTTC	1 cut(s)	1082
BstAPI	GCANNNNNTGC	1 cut(s)	1139
BstC8I	GCNNGC	5 cut(s)	501, 888, 924, 1049, 1064
BstDEI	CTNAG	5 cut(s)	194, 254, 444, 744, 1143
BstF5I	GGATG	2 cut(s)	168, 685
BstHHI	GCGC	1 cut(s)	151
BstKTI	GATC	7 cut(s)	126, 142, 160, 388, 516, 787, 1009
BstMAI	GTCTC	1 cut(s)	812
BstMBI	GATC	7 cut(s)	123, 139, 157, 385, 513, 784, 1006
BstMWI	GCNNNNNNNGC	4 cut(s)	653, 919, 1048, 1139
BstNI	CCWGG	2 cut(s)	634, 1099
BstNSI	RCATGY	1 cut(s)	1055
BstSCI	CCNGG	2 cut(s)	632, 1097
BstSFI	CTRYAG	2 cut(s)	802, 852
BstV1I	GCAGC	3 cut(s)	838, 889, 1104
BstV2I	GAAGAC	1 cut(s)	1026
BstX2I	RGATCY	4 cut(s)	123, 139, 513, 784
BstXI	CCANNNNNNTGG	1 cut(s)	765
BstYI	RGATCY	4 cut(s)	123, 139, 513, 784
BtgZI	GCGATG	2 cut(s)	791, 941
BtsCI	GGATG	2 cut(s)	168, 685
BtsI	GCAGTG	1 cut(s)	1021
BtsIMutI	CAGTG	5 cut(s)	113, 202, 948, 1021, 1151
Cac8I	GCNNGC	5 cut(s)	501, 888, 924, 1049, 1064
CaiI	CAGNNNCTG	3 cut(s)	115, 586, 947
CciI	TCATGA	1 cut(s)	1074
CfoI	GCGC	1 cut(s)	151
Cfr10I	RCCGGY	1 cut(s)	369
Cfr13I	GGNCC	1 cut(s)	206
Csp6I	GTAC	2 cut(s)	262, 686
CviAII	CATG	4 cut(s)	697, 1033, 1052, 1075
CviQI	GTAC	2 cut(s)	262, 686
DdeI	CTNAG	5 cut(s)	194, 254, 444, 744, 1143
DpnI	GATC	7 cut(s)	125, 141, 159, 387, 515, 786, 1008
DpnII	GATC	7 cut(s)	123, 139, 157, 385, 513, 784, 1006
DraI	TTTAAA	1 cut(s)	1108
Eam1104I	CTCTTC	1 cut(s)	1082
EarI	CTCTTC	1 cut(s)	1082
Eco47I	GGWCC	1 cut(s)	206
Eco57I	CTGAAG	1 cut(s)	710
EcoRII	CCWGG	2 cut(s)	632, 1097
EcoT22I	ATGCAT	2 cut(s)	28, 462
FaeI	CATG	4 cut(s)	700, 1036, 1055, 1078
FatI	CATG	4 cut(s)	696, 1032, 1051, 1074
FbaI	TGATCA	1 cut(s)	157
Fnu4HI	GCNGC	3 cut(s)	852, 903, 1093
FokI	GGATG	2 cut(s)	155, 692
Fsp4HI	GCNGC	3 cut(s)	852, 903, 1093
GlaI	GCGC	1 cut(s)	150
GluI	GCNGC	3 cut(s)	852, 903, 1093
GsuI	CTGGAG	2 cut(s)	435, 608
HapII	CCGG	2 cut(s)	370, 1124
HhaI	GCGC	1 cut(s)	151
Hin1II	CATG	4 cut(s)	700, 1036, 1055, 1078
Hin6I	GCGC	1 cut(s)	149
HinP1I	GCGC	1 cut(s)	149
HincII	GTYRAC	2 cut(s)	322, 429
HindII	GTYRAC	2 cut(s)	322, 429
HinfI	GANTC	6 cut(s)	289, 343, 490, 538, 553, 637
HpaI	GTTAAC	1 cut(s)	429
HpaII	CCGG	2 cut(s)	370, 1124
HphI	GGTGA	2 cut(s)	466, 632
Hpy166II	GTNNAC	5 cut(s)	264, 322, 429, 530, 750
Hpy188I	TCNGA	3 cut(s)	543, 745, 1166
Hpy188III	TCNNGA	8 cut(s)	98, 137, 293, 494, 557, 587, 880, 1075
Hpy8I	GTNNAC	5 cut(s)	264, 322, 429, 530, 750
HpyAV	CCTTC	8 cut(s)	153, 218, 475, 672, 714, 766, 857, 955
HpyCH4III	ACNGT	3 cut(s)	527, 819, 936
HpyF10VI	GCNNNNNNNGC	4 cut(s)	653, 919, 1048, 1139
HpyF3I	CTNAG	5 cut(s)	194, 254, 444, 744, 1143
Hsp92II	CATG	4 cut(s)	700, 1036, 1055, 1078
HspAI	GCGC	1 cut(s)	149
Ksp22I	TGATCA	1 cut(s)	157
KspAI	GTTAAC	1 cut(s)	429
Kzo9I	GATC	7 cut(s)	123, 139, 157, 385, 513, 784, 1006
LguI	GCTCTTC	1 cut(s)	1082
LmnI	GCTCC	2 cut(s)	4, 652
Lsp1109I	GCAGC	3 cut(s)	838, 889, 1104
LweI	GCATC	6 cut(s)	13, 447, 469, 607, 1029, 1142
MaeIII	GTNAC	1 cut(s)	228
MalI	GATC	7 cut(s)	125, 141, 159, 387, 515, 786, 1008
MboI	GATC	7 cut(s)	123, 139, 157, 385, 513, 784, 1006
MboII	GAAGA	3 cut(s)	51, 1031, 1099
MflI	RGATCY	4 cut(s)	123, 139, 513, 784
MluCI	AATT	4 cut(s)	10, 81, 102, 464
MlyI	GAGTC	1 cut(s)	631
MmeI	TCCRAC	1 cut(s)	782
MnlI	CCTC	8 cut(s)	263, 403, 466, 676, 676, 679, 775, 1123
Mph1103I	ATGCAT	2 cut(s)	28, 462
MroXI	GAANNNNTTC	1 cut(s)	81
MseI	TTAA	7 cut(s)	18, 42, 183, 248, 428, 486, 1107
MslI	CAYNNNNRTG	3 cut(s)	678, 1037, 1108
MspI	CCGG	2 cut(s)	370, 1124
MspR9I	CCNGG	2 cut(s)	634, 1099
MvaI	CCWGG	2 cut(s)	634, 1099
MwoI	GCNNNNNNNGC	4 cut(s)	653, 919, 1048, 1139
NdeII	GATC	7 cut(s)	123, 139, 157, 385, 513, 784, 1006
NlaIII	CATG	4 cut(s)	700, 1036, 1055, 1078
NlaIV	GGNNCC	1 cut(s)	515
NmuCI	GTSAC	1 cut(s)	228
NsiI	ATGCAT	2 cut(s)	28, 462
NspI	RCATGY	1 cut(s)	1055
PagI	TCATGA	1 cut(s)	1074
PciSI	GCTCTTC	1 cut(s)	1082
PdmI	GAANNNNTTC	1 cut(s)	81
PfeI	GAWTC	5 cut(s)	289, 343, 490, 538, 553
PkrI	GCNGC	3 cut(s)	853, 904, 1094
PleI	GAGTC	1 cut(s)	631
PpsI	GAGTC	1 cut(s)	631
Psp6I	CCWGG	2 cut(s)	632, 1097
PspGI	CCWGG	2 cut(s)	632, 1097
PspN4I	GGNNCC	1 cut(s)	515
PspPI	GGNCC	1 cut(s)	206
PstI	CTGCAG	1 cut(s)	856
PstNI	CAGNNNCTG	3 cut(s)	115, 586, 947
PsuI	RGATCY	4 cut(s)	123, 139, 513, 784
RsaI	GTAC	2 cut(s)	263, 687
RsaNI	GTAC	2 cut(s)	262, 686
RseI	CAYNNNNRTG	3 cut(s)	678, 1037, 1108
SapI	GCTCTTC	1 cut(s)	1082
SaqAI	TTAA	7 cut(s)	18, 42, 183, 248, 428, 486, 1107
SatI	GCNGC	3 cut(s)	852, 903, 1093
Sau3AI	GATC	7 cut(s)	123, 139, 157, 385, 513, 784, 1006
Sau96I	GGNCC	1 cut(s)	206
SchI	GAGTC	1 cut(s)	631
ScrFI	CCNGG	2 cut(s)	634, 1099
SfaNI	GCATC	6 cut(s)	13, 447, 469, 607, 1029, 1142
SfcI	CTRYAG	2 cut(s)	802, 852
SinI	GGWCC	1 cut(s)	206
SmiI	ATTTAAAT	1 cut(s)	1108
SmiMI	CAYNNNNRTG	3 cut(s)	678, 1037, 1108
SmlI	CTYRAG	5 cut(s)	135, 470, 494, 557, 609
SmoI	CTYRAG	5 cut(s)	135, 470, 494, 557, 609
Sse9I	AATT	4 cut(s)	10, 81, 102, 464
StyD4I	CCNGG	2 cut(s)	632, 1097
SwaI	ATTTAAAT	1 cut(s)	1108
TaaI	ACNGT	3 cut(s)	527, 819, 936
TaqI	TCGA	1 cut(s)	1085
TasI	AATT	4 cut(s)	10, 81, 102, 464
TatI	WGTACW	1 cut(s)	261
TfiI	GAWTC	5 cut(s)	289, 343, 490, 538, 553
Tru1I	TTAA	7 cut(s)	18, 42, 183, 248, 428, 486, 1107
Tru9I	TTAA	7 cut(s)	18, 42, 183, 248, 428, 486, 1107
TscAI	CASTG	5 cut(s)	120, 202, 948, 1021, 1151
TseFI	GTSAC	1 cut(s)	228
TseI	GCWGC	3 cut(s)	851, 902, 1092
Tsp45I	GTSAC	1 cut(s)	228
TspDTI	ATGAA	3 cut(s)	494, 944, 1091
TspGWI	ACGGA	1 cut(s)	506
TspRI	CASTG	5 cut(s)	120, 202, 948, 1021, 1151
VpaK11BI	GGWCC	1 cut(s)	206
XapI	RAATTY	1 cut(s)	10
XceI	RCATGY	1 cut(s)	1055
XmnI	GAANNNNTTC	1 cut(s)	81
Zsp2I	ATGCAT	2 cut(s)	28, 462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.