Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0006567

Physical Location & Seq

Genomic Coordinates Reverse (-)

15985549 .. 15989123

Gene Structure 3575 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g18710.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGTACGCTGATCGAGAAGAAGCCGATTCCAAGAGGTCCATTAAAGAGCGTCTCAATGGCAACTTCGGCAGGGATCGTAGACAGGTCGCCGGCAAAAGGCAGAGACAAGATGACAAGTGGGAGCATGATCTTTATGATGATAACGAATCTCAATTATCAACTCGCAAAGCTGGGGACCTTCGTTTGAAGCTCCAGAGGAAAAGTTTCAAGCAGACATCTGGAACAAGATCTGTTTCAGGTGTAAGGGACCTACGGGAAAAGCTATCCGGTACAATGAAGCCACAACCAATGAATGCCGATCCACCAAGGTCAAAAGTAGAGGCTGCTAAATCAGCCAGGAGAACCGTTGCTGTTGCAGCACTGGCACCAGAGAATCACAAAGTTGCCAACACAACATCTAGGAAGAAGACTTCAAAAAAGGTTGACACAACAGTGGACGAATTTTTGACGTCCTTGGATCTTGAAAAGTATTCCATTACATTTCAGGCAGAGGAAGTTGATATGACGGCTCTTGTACACATGACTGATGAGGATCTCAAGGCTCTAGGAATACCAATGGGTCCCAGGAAGAAGATTCTTTTAGCCTTGGAATCAAGAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAM_1

Protein Analysis

201

Amino Acids

22.66

Weight (kDa)

9.77

Isoelectric Point (pI)

38.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAM_1	PF00536	142 - 186	1.4e-10	SAM domain (Sterile alpha motif)
SAM_2	PF07647	144 - 194	1.4e-06	SAM domain (Sterile alpha motif)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006567)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07170 AT3G07170 AT5G48680
fragaria_vesca	FvH4_2g18710 FvH4_2g18710 FvH4_2g18710 FvH4_5g09350
malus_domestica	MD05G1172900.v1.1 MD10G1161300.v1.1
prunus_persica	Prupe.8G200300_v2.0.a1
pyrus_communis	pycom05g15950 pycom10g13930
rosa_chinensis	RchiOBHm_Chr6g0284331
rosa_laevigata	RLG00000012751
rosa_multiflora	Rmu_sc0002698.1_g000013
rosa_roxburghii	Rroxscaffold_7G00184740
rosa_rugosa	Rorug06G0162300 Rorug06G0162300 Rorug06G0162400 Rorug06G0162500
rosa_samantha	Rh6AG275200 Rh6BG275700 Rh6CG277400 Rh6CG277600 Rh6DG270400
rosa_wichuraiana	Rw6G023680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	452
AccB1I	GGYRCC	1 cut(s)	364
AccI	GTMKAC	1 cut(s)	79
AclWI	GGATC	4 cut(s)	81, 293, 465, 540
AcsI	RAATTY	1 cut(s)	440
AcyI	GRCGYC	1 cut(s)	449
AfaI	GTAC	3 cut(s)	5, 271, 516
AfiI	CCNNNNNNNGG	1 cut(s)	96
AgsI	TTSAA	4 cut(s)	187, 208, 414, 464
AjnI	CCWGG	2 cut(s)	335, 563
AleI	CACNNNNGTG	1 cut(s)	431
AluBI	AGCT	3 cut(s)	170, 190, 262
AluI	AGCT	3 cut(s)	170, 190, 262
Alw26I	GTCTC	2 cut(s)	56, 97
AlwI	GGATC	4 cut(s)	81, 293, 465, 540
ApeKI	GCWGC	2 cut(s)	323, 356
ApoI	RAATTY	1 cut(s)	440
Asp700I	GAANNNNTTC	1 cut(s)	203
AspS9I	GGNCC	4 cut(s)	36, 175, 247, 560
AvaII	GGWCC	4 cut(s)	36, 175, 247, 560
BanI	GGYRCC	1 cut(s)	364
BbsI	GAAGAC	1 cut(s)	413
BbvI	GCAGC	2 cut(s)	310, 368
BceAI	ACGGC	1 cut(s)	522
BciT130I	CCWGG	2 cut(s)	337, 565
BcoDI	GTCTC	2 cut(s)	56, 97
BfaI	CTAG	2 cut(s)	399, 545
BglII	AGATCT	1 cut(s)	227
BisI	GCNGC	2 cut(s)	324, 357
BlsI	GCNGC	2 cut(s)	325, 358
Bme1390I	CCNGG	2 cut(s)	337, 565
Bme18I	GGWCC	4 cut(s)	36, 175, 247, 560
BmgT120I	GGNCC	4 cut(s)	36, 175, 247, 560
BmiI	GGNNCC	5 cut(s)	176, 248, 366, 561, 562
BmrFI	CCNGG	2 cut(s)	337, 565
BpiI	GAAGAC	1 cut(s)	413
BpmI	CTGGAG	1 cut(s)	176
BpuEI	CTTGAG	1 cut(s)	521
BsaBI	GATNNNNATC	1 cut(s)	531
BsaHI	GRCGYC	1 cut(s)	449
BsaJI	CCNNGG	4 cut(s)	305, 453, 563, 585
BsaWI	WCCGGW	1 cut(s)	266
Bsc4I	CCNNNNNNNGG	1 cut(s)	96
Bse118I	RCCGGY	1 cut(s)	89
Bse1I	ACTGG	1 cut(s)	366
Bse8I	GATNNNNATC	1 cut(s)	531
BseBI	CCWGG	2 cut(s)	337, 565
BseDI	CCNNGG	4 cut(s)	305, 453, 563, 585
BseJI	GATNNNNATC	1 cut(s)	531
BseLI	CCNNNNNNNGG	1 cut(s)	96
BseNI	ACTGG	1 cut(s)	366
BseXI	GCAGC	2 cut(s)	310, 368
BseYI	CCCAGC	1 cut(s)	170
BshNI	GGYRCC	1 cut(s)	364
BsiSI	CCGG	2 cut(s)	90, 267
BslFI	GGGAC	3 cut(s)	188, 260, 546
BslI	CCNNNNNNNGG	1 cut(s)	96
BsmAI	GTCTC	2 cut(s)	56, 97
BsmBI	CGTCTC	1 cut(s)	56
BsmFI	GGGAC	3 cut(s)	188, 260, 546
BsmI	GAATGC	1 cut(s)	298
Bsp1407I	TGTACA	1 cut(s)	514
Bsp143I	GATC	7 cut(s)	10, 73, 127, 227, 298, 457, 532
BspLI	GGNNCC	5 cut(s)	176, 248, 366, 561, 562
BspPI	GGATC	4 cut(s)	81, 293, 465, 540
BspT107I	GGYRCC	1 cut(s)	364
BsrFI	RCCGGY	1 cut(s)	89
BsrGI	TGTACA	1 cut(s)	514
BsrI	ACTGG	1 cut(s)	366
BssAI	RCCGGY	1 cut(s)	89
BssECI	CCNNGG	4 cut(s)	305, 453, 563, 585
BssMI	GATC	7 cut(s)	10, 73, 127, 227, 298, 457, 532
BssNI	GRCGYC	1 cut(s)	449
BssT1I	CCWWGG	3 cut(s)	305, 453, 585
Bst2UI	CCWGG	2 cut(s)	337, 565
Bst4CI	ACNGT	2 cut(s)	346, 433
BstACI	GRCGYC	1 cut(s)	449
BstAUI	TGTACA	1 cut(s)	514
BstC8I	GCNNGC	1 cut(s)	91
BstKTI	GATC	7 cut(s)	13, 76, 130, 230, 301, 460, 535
BstMAI	GTCTC	2 cut(s)	56, 97
BstMBI	GATC	7 cut(s)	10, 73, 127, 227, 298, 457, 532
BstMWI	GCNNNNNNNGC	4 cut(s)	66, 332, 356, 362
BstNI	CCWGG	2 cut(s)	337, 565
BstSCI	CCNGG	2 cut(s)	335, 563
BstV1I	GCAGC	2 cut(s)	310, 368
BstV2I	GAAGAC	1 cut(s)	413
BstX2I	RGATCY	3 cut(s)	227, 457, 532
BstYI	RGATCY	3 cut(s)	227, 457, 532
BtsIMutI	CAGTG	2 cut(s)	359, 438
Cac8I	GCNNGC	1 cut(s)	91
Cfr10I	RCCGGY	1 cut(s)	89
Cfr13I	GGNCC	4 cut(s)	36, 175, 247, 560
CseI	GACGC	1 cut(s)	38
Csp6I	GTAC	3 cut(s)	4, 270, 515
CviAII	CATG	2 cut(s)	125, 520
CviQI	GTAC	3 cut(s)	4, 270, 515
DpnI	GATC	7 cut(s)	12, 75, 129, 229, 300, 459, 534
DpnII	GATC	7 cut(s)	10, 73, 127, 227, 298, 457, 532
Eco130I	CCWWGG	3 cut(s)	305, 453, 585
Eco47I	GGWCC	4 cut(s)	36, 175, 247, 560
EcoO109I	RGGNCCY	3 cut(s)	175, 247, 560
EcoRII	CCWGG	2 cut(s)	335, 563
EcoT14I	CCWWGG	3 cut(s)	305, 453, 585
ErhI	CCWWGG	3 cut(s)	305, 453, 585
Esp3I	CGTCTC	1 cut(s)	56
FaeI	CATG	2 cut(s)	128, 523
FaiI	YATR	4 cut(s)	126, 135, 503, 521
FaqI	GGGAC	3 cut(s)	188, 260, 546
FatI	CATG	2 cut(s)	124, 519
FblI	GTMKAC	1 cut(s)	79
Fnu4HI	GCNGC	2 cut(s)	324, 357
Fsp4HI	GCNGC	2 cut(s)	324, 357
FspBI	CTAG	2 cut(s)	399, 545
GluI	GCNGC	2 cut(s)	324, 357
GsaI	CCCAGC	1 cut(s)	174
GsuI	CTGGAG	1 cut(s)	176
HapII	CCGG	2 cut(s)	90, 267
HgaI	GACGC	1 cut(s)	38
Hin1I	GRCGYC	1 cut(s)	449
Hin1II	CATG	2 cut(s)	128, 523
HincII	GTYRAC	1 cut(s)	424
HindII	GTYRAC	1 cut(s)	424
HinfI	GANTC	5 cut(s)	26, 146, 373, 574, 590
HpaII	CCGG	2 cut(s)	90, 267
Hpy166II	GTNNAC	4 cut(s)	80, 424, 436, 517
Hpy188III	TCNNGA	5 cut(s)	14, 193, 219, 461, 594
Hpy8I	GTNNAC	4 cut(s)	80, 424, 436, 517
HpyAV	CCTTC	1 cut(s)	188
HpyCH4III	ACNGT	2 cut(s)	346, 433
HpyCH4IV	ACGT	1 cut(s)	449
HpyCH4V	TGCA	1 cut(s)	356
HpyF10VI	GCNNNNNNNGC	4 cut(s)	66, 332, 356, 362
HpySE526I	ACGT	1 cut(s)	449
Hsp92I	GRCGYC	1 cut(s)	449
Hsp92II	CATG	2 cut(s)	128, 523
KflI	GGGWCCC	1 cut(s)	560
KroI	GCCGGC	1 cut(s)	89
KroNI	GCCGGC	1 cut(s)	91
Kzo9I	GATC	7 cut(s)	10, 73, 127, 227, 298, 457, 532
LmnI	GCTCC	2 cut(s)	121, 195
Lsp1109I	GCAGC	2 cut(s)	310, 368
MaeI	CTAG	2 cut(s)	399, 545
MaeII	ACGT	1 cut(s)	449
MalI	GATC	7 cut(s)	12, 75, 129, 229, 300, 459, 534
MboI	GATC	7 cut(s)	10, 73, 127, 227, 298, 457, 532
MboII	GAAGA	5 cut(s)	29, 415, 418, 580, 583
MflI	RGATCY	3 cut(s)	227, 457, 532
MluCI	AATT	2 cut(s)	152, 440
MnlI	CCTC	5 cut(s)	27, 189, 313, 484, 523
MroNI	GCCGGC	1 cut(s)	89
MroXI	GAANNNNTTC	1 cut(s)	203
MseI	TTAA	1 cut(s)	42
MslI	CAYNNNNRTG	1 cut(s)	431
MspI	CCGG	2 cut(s)	90, 267
MspR9I	CCNGG	2 cut(s)	337, 565
Mva1269I	GAATGC	1 cut(s)	298
MvaI	CCWGG	2 cut(s)	337, 565
MwoI	GCNNNNNNNGC	4 cut(s)	66, 332, 356, 362
NaeI	GCCGGC	1 cut(s)	91
NdeII	GATC	7 cut(s)	10, 73, 127, 227, 298, 457, 532
NgoMIV	GCCGGC	1 cut(s)	89
NlaIII	CATG	2 cut(s)	128, 523
NlaIV	GGNNCC	5 cut(s)	176, 248, 366, 561, 562
OliI	CACNNNNGTG	1 cut(s)	431
PctI	GAATGC	1 cut(s)	298
PdiI	GCCGGC	1 cut(s)	91
PdmI	GAANNNNTTC	1 cut(s)	203
PfeI	GAWTC	5 cut(s)	26, 146, 373, 574, 590
PkrI	GCNGC	2 cut(s)	325, 358
PpuMI	RGGWCCY	3 cut(s)	175, 247, 560
Psp5II	RGGWCCY	3 cut(s)	175, 247, 560
Psp6I	CCWGG	2 cut(s)	335, 563
PspFI	CCCAGC	1 cut(s)	170
PspGI	CCWGG	2 cut(s)	335, 563
PspN4I	GGNNCC	5 cut(s)	176, 248, 366, 561, 562
PspPI	GGNCC	4 cut(s)	36, 175, 247, 560
PspPPI	RGGWCCY	3 cut(s)	175, 247, 560
PsuI	RGATCY	3 cut(s)	227, 457, 532
RsaI	GTAC	3 cut(s)	5, 271, 516
RsaNI	GTAC	3 cut(s)	4, 270, 515
RseI	CAYNNNNRTG	1 cut(s)	431
SaqAI	TTAA	1 cut(s)	42
SatI	GCNGC	2 cut(s)	324, 357
Sau3AI	GATC	7 cut(s)	10, 73, 127, 227, 298, 457, 532
Sau96I	GGNCC	4 cut(s)	36, 175, 247, 560
ScrFI	CCNGG	2 cut(s)	337, 565
SinI	GGWCC	4 cut(s)	36, 175, 247, 560
SmiMI	CAYNNNNRTG	1 cut(s)	431
SmlI	CTYRAG	1 cut(s)	536
SmoI	CTYRAG	1 cut(s)	536
Sse9I	AATT	2 cut(s)	152, 440
SspMI	CTAG	2 cut(s)	399, 545
StyD4I	CCNGG	2 cut(s)	335, 563
StyI	CCWWGG	3 cut(s)	305, 453, 585
TaaI	ACNGT	2 cut(s)	346, 433
TaiI	ACGT	1 cut(s)	452
TaqI	TCGA	1 cut(s)	13
TasI	AATT	2 cut(s)	152, 440
TatI	WGTACW	1 cut(s)	514
TfiI	GAWTC	5 cut(s)	26, 146, 373, 574, 590
Tru1I	TTAA	1 cut(s)	42
Tru9I	TTAA	1 cut(s)	42
TscAI	CASTG	2 cut(s)	366, 438
TseI	GCWGC	2 cut(s)	323, 356
TspDTI	ATGAA	2 cut(s)	290, 305
TspRI	CASTG	2 cut(s)	366, 438
VpaK11BI	GGWCC	4 cut(s)	36, 175, 247, 560
XapI	RAATTY	1 cut(s)	440
XmiI	GTMKAC	1 cut(s)	79
XmnI	GAANNNNTTC	1 cut(s)	203
XspI	CTAG	2 cut(s)	399, 545
ZraI	GACGTC	1 cut(s)	450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.