Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0006567

Physical Location & Seq

Genomic Coordinates Reverse (-)

46313498 .. 46318016

Gene Structure 4519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG270400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGTACGCTGATCGAGAAGAAGCTGATGCCAAGAGGTCCATTAAAGAGCGTCTCAATGGCAACAACTTCAGGGATCGTAGACAAGTAGCCGGCAAAAGGCAGAGACAAGATGACAAGTGGGAGCATGATCTTTATGATGATAACGAACCTCAATTATCAAATCGCAAAGTTGGGGACCTTCGTTTGAAGCTCCAGAGGAAAAGTTTCAAACAAACATCTGGAACAAGATCTGTTTCAGGTGTAAGGGACCTACGGGAAAAGCTATCCGGTACTATGAAGCCACAACCAGTGAATGCCGATCCACCAAGGTCAAAAGTAGAGGCTGCTAAATCAGCAAGGAGAACCATTGCTGTTGCAGCACCTGCACCAGAGACTCACAAAGTTGCCAACACAACATCTAGGAAGAAGGCTTCAAAAAAGGCACGAATTGTTTGGTATTCATTAATTCCATACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAM_1

Protein Analysis

151

Amino Acids

17.32

Weight (kDa)

10.45

Isoelectric Point (pI)

47.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006567)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07170 AT3G07170 AT5G48680
fragaria_vesca	FvH4_2g18710 FvH4_2g18710 FvH4_2g18710 FvH4_5g09350
malus_domestica	MD05G1172900.v1.1 MD10G1161300.v1.1
prunus_persica	Prupe.8G200300_v2.0.a1
pyrus_communis	pycom05g15950 pycom10g13930
rosa_chinensis	RchiOBHm_Chr6g0284331
rosa_laevigata	RLG00000012751
rosa_multiflora	Rmu_sc0002698.1_g000013
rosa_roxburghii	Rroxscaffold_7G00184740
rosa_rugosa	Rorug06G0162300 Rorug06G0162300 Rorug06G0162400 Rorug06G0162500
rosa_samantha	Rh6AG275200 Rh6BG275700 Rh6CG277400 Rh6CG277600 Rh6DG270400
rosa_wichuraiana	Rw6G023680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	370
Acc36I	ACCTGC	1 cut(s)	370
AccI	GTMKAC	1 cut(s)	79
AclWI	GGATC	2 cut(s)	81, 293
AcuI	CTGAAG	1 cut(s)	52
AfaI	GTAC	2 cut(s)	5, 271
AfiI	CCNNNNNNNGG	1 cut(s)	96
AgsI	TTSAA	3 cut(s)	187, 208, 414
AluBI	AGCT	3 cut(s)	23, 190, 262
AluI	AGCT	3 cut(s)	23, 190, 262
Alw26I	GTCTC	3 cut(s)	56, 97, 365
AlwI	GGATC	2 cut(s)	81, 293
AlwNI	CAGNNNCTG	1 cut(s)	362
ApeKI	GCWGC	2 cut(s)	323, 356
AseI	ATTAAT	1 cut(s)	443
Asp700I	GAANNNNTTC	1 cut(s)	203
AspS9I	GGNCC	3 cut(s)	36, 175, 247
AvaII	GGWCC	3 cut(s)	36, 175, 247
BbvI	GCAGC	2 cut(s)	310, 368
BcoDI	GTCTC	3 cut(s)	56, 97, 365
BfaI	CTAG	1 cut(s)	399
BfuAI	ACCTGC	1 cut(s)	370
BglII	AGATCT	1 cut(s)	227
BisI	GCNGC	2 cut(s)	324, 357
BlsI	GCNGC	2 cut(s)	325, 358
Bme18I	GGWCC	3 cut(s)	36, 175, 247
BmgT120I	GGNCC	3 cut(s)	36, 175, 247
BmiI	GGNNCC	2 cut(s)	176, 248
BmsI	GCATC	1 cut(s)	16
BpmI	CTGGAG	1 cut(s)	176
BsaJI	CCNNGG	1 cut(s)	305
BsaWI	WCCGGW	1 cut(s)	266
Bsc4I	CCNNNNNNNGG	1 cut(s)	96
Bse118I	RCCGGY	1 cut(s)	89
Bse1I	ACTGG	1 cut(s)	287
Bse3DI	GCAATG	1 cut(s)	345
BseDI	CCNNGG	1 cut(s)	305
BseLI	CCNNNNNNNGG	1 cut(s)	96
BseMI	GCAATG	1 cut(s)	345
BseNI	ACTGG	1 cut(s)	287
BseXI	GCAGC	2 cut(s)	310, 368
BsgI	GTGCAG	1 cut(s)	348
BsiSI	CCGG	2 cut(s)	90, 267
BslFI	GGGAC	2 cut(s)	188, 260
BslI	CCNNNNNNNGG	1 cut(s)	96
BsmAI	GTCTC	3 cut(s)	56, 97, 365
BsmBI	CGTCTC	1 cut(s)	56
BsmFI	GGGAC	2 cut(s)	188, 260
BsmI	GAATGC	1 cut(s)	298
Bsp143I	GATC	5 cut(s)	10, 73, 127, 227, 298
BspLI	GGNNCC	2 cut(s)	176, 248
BspMI	ACCTGC	1 cut(s)	370
BspPI	GGATC	2 cut(s)	81, 293
BsrDI	GCAATG	1 cut(s)	345
BsrFI	RCCGGY	1 cut(s)	89
BsrI	ACTGG	1 cut(s)	287
BssAI	RCCGGY	1 cut(s)	89
BssECI	CCNNGG	1 cut(s)	305
BssMI	GATC	5 cut(s)	10, 73, 127, 227, 298
BssT1I	CCWWGG	1 cut(s)	305
BstAPI	GCANNNNNTGC	1 cut(s)	362
BstC8I	GCNNGC	1 cut(s)	91
BstKTI	GATC	5 cut(s)	13, 76, 130, 230, 301
BstMAI	GTCTC	3 cut(s)	56, 97, 365
BstMBI	GATC	5 cut(s)	10, 73, 127, 227, 298
BstMWI	GCNNNNNNNGC	3 cut(s)	332, 356, 362
BstV1I	GCAGC	2 cut(s)	310, 368
BstX2I	RGATCY	1 cut(s)	227
BstYI	RGATCY	1 cut(s)	227
BtsIMutI	CAGTG	1 cut(s)	294
BveI	ACCTGC	1 cut(s)	370
Cac8I	GCNNGC	1 cut(s)	91
CaiI	CAGNNNCTG	1 cut(s)	362
Cfr10I	RCCGGY	1 cut(s)	89
Cfr13I	GGNCC	3 cut(s)	36, 175, 247
CseI	GACGC	1 cut(s)	38
Csp6I	GTAC	2 cut(s)	4, 270
CviAII	CATG	1 cut(s)	125
CviJI	RGCY	7 cut(s)	23, 89, 190, 262, 280, 323, 410
CviKI_1	RGCY	7 cut(s)	23, 89, 190, 262, 280, 323, 410
CviQI	GTAC	2 cut(s)	4, 270
DpnI	GATC	5 cut(s)	12, 75, 129, 229, 300
DpnII	GATC	5 cut(s)	10, 73, 127, 227, 298
Eco130I	CCWWGG	1 cut(s)	305
Eco47I	GGWCC	3 cut(s)	36, 175, 247
Eco57I	CTGAAG	1 cut(s)	52
EcoO109I	RGGNCCY	2 cut(s)	175, 247
EcoT14I	CCWWGG	1 cut(s)	305
ErhI	CCWWGG	1 cut(s)	305
Esp3I	CGTCTC	1 cut(s)	56
FaeI	CATG	1 cut(s)	128
FaiI	YATR	4 cut(s)	126, 135, 275, 451
FaqI	GGGAC	2 cut(s)	188, 260
FatI	CATG	1 cut(s)	124
FblI	GTMKAC	1 cut(s)	79
Fnu4HI	GCNGC	2 cut(s)	324, 357
Fsp4HI	GCNGC	2 cut(s)	324, 357
FspBI	CTAG	1 cut(s)	399
GluI	GCNGC	2 cut(s)	324, 357
GsuI	CTGGAG	1 cut(s)	176
HapII	CCGG	2 cut(s)	90, 267
HgaI	GACGC	1 cut(s)	38
Hin1II	CATG	1 cut(s)	128
HinfI	GANTC	1 cut(s)	373
HpaII	CCGG	2 cut(s)	90, 267
Hpy166II	GTNNAC	1 cut(s)	80
Hpy188III	TCNNGA	3 cut(s)	14, 193, 219
Hpy8I	GTNNAC	1 cut(s)	80
HpyAV	CCTTC	2 cut(s)	188, 400
HpyCH4V	TGCA	2 cut(s)	356, 365
HpyF10VI	GCNNNNNNNGC	3 cut(s)	332, 356, 362
Hsp92II	CATG	1 cut(s)	128
KroI	GCCGGC	1 cut(s)	89
KroNI	GCCGGC	1 cut(s)	91
Kzo9I	GATC	5 cut(s)	10, 73, 127, 227, 298
LmnI	GCTCC	2 cut(s)	121, 195
LpnPI	CCDG	9 cut(s)	55, 103, 204, 206, 222, 280, 300, 375, 381
Lsp1109I	GCAGC	2 cut(s)	310, 368
LweI	GCATC	1 cut(s)	16
MaeI	CTAG	1 cut(s)	399
MalI	GATC	5 cut(s)	12, 75, 129, 229, 300
MboI	GATC	5 cut(s)	10, 73, 127, 227, 298
MboII	GAAGA	2 cut(s)	29, 415
MflI	RGATCY	1 cut(s)	227
MluCI	AATT	3 cut(s)	152, 426, 444
MlyI	GAGTC	1 cut(s)	367
MnlI	CCTC	4 cut(s)	27, 159, 189, 313
MroNI	GCCGGC	1 cut(s)	89
MroXI	GAANNNNTTC	1 cut(s)	203
MseI	TTAA	2 cut(s)	42, 443
MspI	CCGG	2 cut(s)	90, 267
Mva1269I	GAATGC	1 cut(s)	298
MwoI	GCNNNNNNNGC	3 cut(s)	332, 356, 362
NaeI	GCCGGC	1 cut(s)	91
NdeII	GATC	5 cut(s)	10, 73, 127, 227, 298
NgoMIV	GCCGGC	1 cut(s)	89
NlaIII	CATG	1 cut(s)	128
NlaIV	GGNNCC	2 cut(s)	176, 248
PaqCI	CACCTGC	1 cut(s)	370
PctI	GAATGC	1 cut(s)	298
PdiI	GCCGGC	1 cut(s)	91
PdmI	GAANNNNTTC	1 cut(s)	203
PkrI	GCNGC	2 cut(s)	325, 358
PleI	GAGTC	1 cut(s)	367
PpsI	GAGTC	1 cut(s)	367
PpuMI	RGGWCCY	2 cut(s)	175, 247
PshBI	ATTAAT	1 cut(s)	443
Psp5II	RGGWCCY	2 cut(s)	175, 247
PspN4I	GGNNCC	2 cut(s)	176, 248
PspPI	GGNCC	3 cut(s)	36, 175, 247
PspPPI	RGGWCCY	2 cut(s)	175, 247
PstNI	CAGNNNCTG	1 cut(s)	362
PsuI	RGATCY	1 cut(s)	227
RsaI	GTAC	2 cut(s)	5, 271
RsaNI	GTAC	2 cut(s)	4, 270
SaqAI	TTAA	2 cut(s)	42, 443
SatI	GCNGC	2 cut(s)	324, 357
Sau3AI	GATC	5 cut(s)	10, 73, 127, 227, 298
Sau96I	GGNCC	3 cut(s)	36, 175, 247
SchI	GAGTC	1 cut(s)	367
SfaNI	GCATC	1 cut(s)	16
SinI	GGWCC	3 cut(s)	36, 175, 247
Sse9I	AATT	3 cut(s)	152, 426, 444
SspMI	CTAG	1 cut(s)	399
StyI	CCWWGG	1 cut(s)	305
TaqI	TCGA	1 cut(s)	13
TasI	AATT	3 cut(s)	152, 426, 444
Tru1I	TTAA	2 cut(s)	42, 443
Tru9I	TTAA	2 cut(s)	42, 443
TscAI	CASTG	1 cut(s)	294
TseI	GCWGC	2 cut(s)	323, 356
TspDTI	ATGAA	2 cut(s)	290, 429
TspRI	CASTG	1 cut(s)	294
VpaK11BI	GGWCC	3 cut(s)	36, 175, 247
VspI	ATTAAT	1 cut(s)	443
XmiI	GTMKAC	1 cut(s)	79
XmnI	GAANNNNTTC	1 cut(s)	203
XspI	CTAG	1 cut(s)	399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.