Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012082

Physical Location & Seq

Genomic Coordinates Reverse (-)

2285777 .. 2287592

Gene Structure 1816 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G07190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGATTCAGTTACTATTCCTGGTTCTGTTCGTAGAAGGTGCGATTGCGTTCTTACTACTGGTAAAGATTGGTCCTTTAAGGGAGCTTGTAATGAAGAGCTTAGACCAGCTTAAATTGGGGAAACGTCCTGCTACTCTGAAAACCATCGCTGGAACCATGTCTGTGATCCTCCTGTCGAATCTCATGAATATCATTAAGATCCAGAACAAGGGTGCCAAACTTGGGACAATGTCTCCAATGGATCAAGTCCTCTGGAGAACACACTTGCTCGAGGCTTCTCTTATGGGTGTTGTGCTCTTTTTTGGCTTCATTATTGACCGGACACATCATTACCTCGAAAAGCTAATCACTTTAAGAAGCAATGTCGGGTCATCGAAAGGAGAACTAGAAGAACTTAGGAAGGAGAGAATCGAACTGAAGGAGAAAGAAGAGAAGACATCCAAGGAAATTAAGCAGCTGAAAGAAAAACTGTCGTGTGTTTCAGAGAATCTCAAGAAACTAGAGAAGGAATCCAAAGAGAAAGAAACGAAGCTCGAAACAGCTGAAGCCCATGTCACAGCTCTCCAAAAGCAGTCTTCAGAGCTATTGTTGGAGTATGACAGATTGCTAGAAGACAACCAAAATCTCCAAAGCCAGATTTTGGTTGGAACCAAGAAAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 ko05165 map04141 map05165

Pfam Domains

Protein Families

Bap31

Protein Analysis

220

Amino Acids

25.04

Weight (kDa)

9.25

Isoelectric Point (pI)

42.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012082)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07190 AT5G48660 AT5G48660
fragaria_vesca	FvH4_2g18660 FvH4_2g18660
malus_domestica	MD05G1172500.v1.1 MD10G1160700.v1.1
prunus_persica	Prupe.8G199900_v2.0.a1
pyrus_communis	pycom05g15910 pycom10g13890
rosa_chinensis	RchiOBHm_Chr6g0284221
rosa_laevigata	RLG00000012755
rosa_roxburghii	Rroxscaffold_7G00184770
rosa_rugosa	Rorug06G0162000
rosa_samantha	Rh6AG274900 Rh6BG275400 Rh6CG277100 Rh6DG269800
rosa_wichuraiana	Rw6G023650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	212
AccB7I	CCANNNNNTGG	1 cut(s)	640
AclWI	GGATC	3 cut(s)	160, 193, 249
AcuI	CTGAAG	3 cut(s)	437, 561, 564
AfiI	CCNNNNNNNGG	3 cut(s)	208, 222, 640
AjnI	CCWGG	1 cut(s)	18
AluBI	AGCT	9 cut(s)	85, 99, 109, 343, 457, 532, 542, 560, 583
AluI	AGCT	9 cut(s)	85, 99, 109, 343, 457, 532, 542, 560, 583
Alw21I	GWGCWC	1 cut(s)	297
Alw26I	GTCTC	1 cut(s)	237
AlwI	GGATC	3 cut(s)	160, 193, 249
Ama87I	CYCGRG	1 cut(s)	269
ApeKI	GCWGC	1 cut(s)	454
AspS9I	GGNCC	1 cut(s)	71
AvaI	CYCGRG	1 cut(s)	269
AvaII	GGWCC	1 cut(s)	71
BanI	GGYRCC	1 cut(s)	212
BbsI	GAAGAC	3 cut(s)	440, 567, 618
Bbv12I	GWGCWC	1 cut(s)	297
BbvI	GCAGC	1 cut(s)	466
BccI	CCATC	1 cut(s)	152
BciT130I	CCWGG	1 cut(s)	20
BcoDI	GTCTC	1 cut(s)	237
BfaI	CTAG	3 cut(s)	386, 500, 608
BisI	GCNGC	1 cut(s)	455
BlsI	GCNGC	1 cut(s)	456
Bme1390I	CCNGG	1 cut(s)	20
Bme18I	GGWCC	1 cut(s)	71
BmeT110I	CYCGRG	1 cut(s)	269
BmgT120I	GGNCC	1 cut(s)	71
BmiI	GGNNCC	3 cut(s)	154, 214, 649
BmrFI	CCNGG	1 cut(s)	20
BpiI	GAAGAC	3 cut(s)	440, 567, 618
BpmI	CTGGAG	1 cut(s)	274
BpuEI	CTTGAG	1 cut(s)	476
BsaJI	CCNNGG	1 cut(s)	441
BsaWI	WCCGGW	1 cut(s)	318
BsaXI	ACNNNNNCTCC	2 cut(s)	217, 247
Bsc4I	CCNNNNNNNGG	3 cut(s)	208, 222, 640
Bse1I	ACTGG	1 cut(s)	63
Bse3DI	GCAATG	1 cut(s)	367
BseBI	CCWGG	1 cut(s)	20
BseDI	CCNNGG	1 cut(s)	441
BseGI	GGATG	1 cut(s)	437
BseLI	CCNNNNNNNGG	3 cut(s)	208, 222, 640
BseMI	GCAATG	1 cut(s)	367
BseNI	ACTGG	1 cut(s)	63
BseXI	GCAGC	1 cut(s)	466
BshNI	GGYRCC	1 cut(s)	212
BsiHKAI	GWGCWC	1 cut(s)	297
BsiHKCI	CYCGRG	1 cut(s)	269
BsiSI	CCGG	1 cut(s)	319
BslFI	GGGAC	1 cut(s)	238
BslI	CCNNNNNNNGG	3 cut(s)	208, 222, 640
BsmAI	GTCTC	1 cut(s)	237
BsmFI	GGGAC	1 cut(s)	238
BsoBI	CYCGRG	1 cut(s)	269
Bsp1286I	GDGCHC	1 cut(s)	297
Bsp143I	GATC	3 cut(s)	165, 198, 241
BspHI	TCATGA	1 cut(s)	183
BspLI	GGNNCC	3 cut(s)	154, 214, 649
BspPI	GGATC	3 cut(s)	160, 193, 249
BspQI	GCTCTTC	1 cut(s)	89
BspT107I	GGYRCC	1 cut(s)	212
BsrDI	GCAATG	1 cut(s)	367
BsrI	ACTGG	1 cut(s)	63
BssECI	CCNNGG	1 cut(s)	441
BssMI	GATC	3 cut(s)	165, 198, 241
BssT1I	CCWWGG	1 cut(s)	441
Bst2UI	CCWGG	1 cut(s)	20
Bst4CI	ACNGT	1 cut(s)	471
Bst6I	CTCTTC	2 cut(s)	89, 423
BstDEI	CTNAG	2 cut(s)	100, 395
BstF5I	GGATG	1 cut(s)	437
BstKTI	GATC	3 cut(s)	168, 201, 244
BstMAI	GTCTC	1 cut(s)	237
BstMBI	GATC	3 cut(s)	165, 198, 241
BstNI	CCWGG	1 cut(s)	20
BstSCI	CCNGG	1 cut(s)	18
BstV1I	GCAGC	1 cut(s)	466
BstV2I	GAAGAC	3 cut(s)	440, 567, 618
BstX2I	RGATCY	1 cut(s)	198
BstYI	RGATCY	1 cut(s)	198
BtgZI	GCGATG	1 cut(s)	130
BtsCI	GGATG	1 cut(s)	437
CciI	TCATGA	1 cut(s)	183
Cfr13I	GGNCC	1 cut(s)	71
CviAII	CATG	3 cut(s)	157, 184, 551
DdeI	CTNAG	2 cut(s)	100, 395
DpnI	GATC	3 cut(s)	167, 200, 243
DpnII	GATC	3 cut(s)	165, 198, 241
Eam1104I	CTCTTC	2 cut(s)	89, 423
EarI	CTCTTC	2 cut(s)	89, 423
Eco130I	CCWWGG	1 cut(s)	441
Eco47I	GGWCC	1 cut(s)	71
Eco57I	CTGAAG	3 cut(s)	437, 561, 564
Eco88I	CYCGRG	1 cut(s)	269
EcoRII	CCWGG	1 cut(s)	18
EcoT14I	CCWWGG	1 cut(s)	441
ErhI	CCWWGG	1 cut(s)	441
FaeI	CATG	3 cut(s)	160, 187, 554
FaiI	YATR	5 cut(s)	158, 185, 284, 552, 597
FaqI	GGGAC	1 cut(s)	238
FatI	CATG	3 cut(s)	156, 183, 550
Fnu4HI	GCNGC	1 cut(s)	455
FokI	GGATG	1 cut(s)	424
Fsp4HI	GCNGC	1 cut(s)	455
FspBI	CTAG	3 cut(s)	386, 500, 608
GluI	GCNGC	1 cut(s)	455
GsuI	CTGGAG	1 cut(s)	274
HapII	CCGG	1 cut(s)	319
Hin1II	CATG	3 cut(s)	160, 187, 554
HinfI	GANTC	5 cut(s)	4, 178, 408, 487, 509
HpaII	CCGG	1 cut(s)	319
Hpy188I	TCNGA	3 cut(s)	138, 484, 580
Hpy188III	TCNNGA	4 cut(s)	184, 202, 253, 493
HpyAV	CCTTC	4 cut(s)	29, 394, 412, 499
HpyCH4III	ACNGT	1 cut(s)	471
HpyCH4IV	ACGT	1 cut(s)	124
HpyF3I	CTNAG	2 cut(s)	100, 395
HpySE526I	ACGT	1 cut(s)	124
Hsp92II	CATG	3 cut(s)	160, 187, 554
Kzo9I	GATC	3 cut(s)	165, 198, 241
LguI	GCTCTTC	1 cut(s)	89
LmnI	GCTCC	1 cut(s)	82
Lsp1109I	GCAGC	1 cut(s)	466
MaeI	CTAG	3 cut(s)	386, 500, 608
MaeII	ACGT	1 cut(s)	124
MaeIII	GTNAC	2 cut(s)	9, 553
MalI	GATC	3 cut(s)	167, 200, 243
MboI	GATC	3 cut(s)	165, 198, 241
MboII	GAAGA	6 cut(s)	106, 401, 440, 445, 567, 623
MflI	RGATCY	1 cut(s)	198
MhlI	GDGCHC	1 cut(s)	297
MluCI	AATT	2 cut(s)	113, 447
MmeI	TCCRAC	2 cut(s)	570, 625
MnlI	CCTC	4 cut(s)	179, 260, 265, 344
MseI	TTAA	5 cut(s)	77, 111, 195, 353, 450
MslI	CAYNNNNRTG	1 cut(s)	161
MspA1I	CMGCKG	2 cut(s)	457, 542
MspI	CCGG	1 cut(s)	319
MspR9I	CCNGG	1 cut(s)	20
MvaI	CCWGG	1 cut(s)	20
NdeII	GATC	3 cut(s)	165, 198, 241
NlaIII	CATG	3 cut(s)	160, 187, 554
NlaIV	GGNNCC	3 cut(s)	154, 214, 649
NmuCI	GTSAC	1 cut(s)	553
PaeR7I	CTCGAG	1 cut(s)	269
PagI	TCATGA	1 cut(s)	183
PciSI	GCTCTTC	1 cut(s)	89
PfeI	GAWTC	5 cut(s)	4, 178, 408, 487, 509
PflFI	GACNNNGTC	1 cut(s)	229
PflMI	CCANNNNNTGG	1 cut(s)	640
PkrI	GCNGC	1 cut(s)	456
Psp6I	CCWGG	1 cut(s)	18
PspGI	CCWGG	1 cut(s)	18
PspN4I	GGNNCC	3 cut(s)	154, 214, 649
PspPI	GGNCC	1 cut(s)	71
PspXI	VCTCGAGB	1 cut(s)	269
PsuI	RGATCY	1 cut(s)	198
PsyI	GACNNNGTC	1 cut(s)	229
PvuII	CAGCTG	2 cut(s)	457, 542
RseI	CAYNNNNRTG	1 cut(s)	161
SapI	GCTCTTC	1 cut(s)	89
SaqAI	TTAA	5 cut(s)	77, 111, 195, 353, 450
SatI	GCNGC	1 cut(s)	455
Sau3AI	GATC	3 cut(s)	165, 198, 241
Sau96I	GGNCC	1 cut(s)	71
ScrFI	CCNGG	1 cut(s)	20
SduI	GDGCHC	1 cut(s)	297
Sfr274I	CTCGAG	1 cut(s)	269
SinI	GGWCC	1 cut(s)	71
SlaI	CTCGAG	1 cut(s)	269
SmiMI	CAYNNNNRTG	1 cut(s)	161
SmlI	CTYRAG	2 cut(s)	269, 491
SmoI	CTYRAG	2 cut(s)	269, 491
Sse9I	AATT	2 cut(s)	113, 447
SspMI	CTAG	3 cut(s)	386, 500, 608
StyD4I	CCNGG	1 cut(s)	18
StyI	CCWWGG	1 cut(s)	441
TaaI	ACNGT	1 cut(s)	471
TaiI	ACGT	1 cut(s)	127
TaqI	TCGA	6 cut(s)	176, 270, 336, 374, 411, 534
TasI	AATT	2 cut(s)	113, 447
TfiI	GAWTC	5 cut(s)	4, 178, 408, 487, 509
Tru1I	TTAA	5 cut(s)	77, 111, 195, 353, 450
Tru9I	TTAA	5 cut(s)	77, 111, 195, 353, 450
TseFI	GTSAC	1 cut(s)	553
TseI	GCWGC	1 cut(s)	454
Tsp45I	GTSAC	1 cut(s)	553
TspDTI	ATGAA	3 cut(s)	107, 200, 298
Tth111I	GACNNNGTC	1 cut(s)	229
Van91I	CCANNNNNTGG	1 cut(s)	640
VpaK11BI	GGWCC	1 cut(s)	71
XcmI	CCANNNNNNNNNTGG	1 cut(s)	641
XhoI	CTCGAG	1 cut(s)	269
XspI	CTAG	3 cut(s)	386, 500, 608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.