Prupe.8G199900_v2.0.a1

B-cell receptor-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0012082
Physical Location & Seq
Forward (+)
18953579 .. 18956139
2561 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G199900.1

Sequence Viewer

Length: 657 bp
ATGATTCAGCTGTTGTTCTTAGTTCTTTTTGCTGAGGGTGTTGTGGCATTTCTTCTATTGGTAAAGATTGGGCCATTGAGGGAGCTTGTGATAAAGAGCCTGGATCAGCTCAAAATGGGTAAGGGTCCAGCTACTGTGAAAACCATTGCTTGCACCATGTCTGTGATTCTCCTGTCAAGCTTTATTAGCATTGTTAAGATCCAGAACAAAGGTGTAAAGCTTGGAACTATGTCACCTATGGATCAGGTTCTGTGGAGAACCCACTTGCTTGAGGCTTCATTAATGGGTTTTACCCTGTTTCTTGGCTTCATAATCGATCGGATGCACCATTATTTAAGTAAACTTATTGGACTGAGGAGTAACGTGGGAGCTTCAAAAGAAGAAGTCGACAGACTTCAGAAAGAGACGATGCACCTTAAAGAAAAGGAAGATAAATCTTCCCAAGAAATCAAGCAGCTGCAAGAAAAAATTTCAACTCTGTCAGAGGATTTGAAGAAGCTGAAATTGGAGTGCAAGGAGAAAGATAAAAACATTGAAACTGCTGAAGCCCATGTTGCTGCCCTCCAGAAACAGGCTGCAGATCTACTTCTTGAATACGACCGTTTGTTAGAAGACAACCAGAATCTTCAGACTCAGTCTCTAGGTTACAGGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 ko05165 map04141 map05165
Pfam Domains
Protein Families
Bap31

Protein Analysis

219

Amino Acids

24.64

Weight (kDa)

8.73

Isoelectric Point (pI)

51.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012082)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07190 AT5G48660 AT5G48660
fragaria_vesca FvH4_2g18660 FvH4_2g18660
malus_domestica MD05G1172500.v1.1 MD10G1160700.v1.1
prunus_persica Prupe.8G199900_v2.0.a1
pyrus_communis pycom05g15910 pycom10g13890
rosa_chinensis RchiOBHm_Chr6g0284221
rosa_laevigata RLG00000012755
rosa_roxburghii Rroxscaffold_7G00184770
rosa_rugosa Rorug06G0162000
rosa_samantha Rh6AG274900 Rh6BG275400 Rh6CG277100 Rh6DG269800
rosa_wichuraiana Rw6G023650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 387
AclWI GGATC 3 cut(s) 111, 193, 249
AcsI RAATTY 1 cut(s) 468
AcuI CTGAAG 3 cut(s) 380, 564, 611
AfiI CCNNNNNNNGG 1 cut(s) 571
AgsI TTSAA 5 cut(s) 375, 474, 493, 536, 593
AjnI CCWGG 1 cut(s) 99
AjuI GAANNNNNNNTTGG 2 cut(s) 488, 520
Alw26I GTCTC 2 cut(s) 398, 642
AlwI GGATC 3 cut(s) 111, 193, 249
AlwNI CAGNNNCTG 3 cut(s) 134, 250, 654
AoxI GGCC 1 cut(s) 71
ApeKI GCWGC 4 cut(s) 454, 457, 557, 575
ApoI RAATTY 1 cut(s) 468
AseI ATTAAT 1 cut(s) 281
AspS9I GGNCC 2 cut(s) 71, 125
AsuHPI GGTGA 1 cut(s) 225
AvaII GGWCC 1 cut(s) 125
BbsI GAAGAC 1 cut(s) 618
BbvCI CCTCAGC 1 cut(s) 33
BbvI GCAGC 4 cut(s) 444, 466, 544, 562
BciT130I CCWGG 1 cut(s) 101
BcoDI GTCTC 2 cut(s) 398, 642
BfaI CTAG 1 cut(s) 641
BfmI CTRYAG 1 cut(s) 576
BglII AGATCT 1 cut(s) 580
BisI GCNGC 4 cut(s) 455, 458, 558, 576
BlsI GCNGC 4 cut(s) 456, 459, 559, 577
Bme1390I CCNGG 1 cut(s) 101
Bme18I GGWCC 1 cut(s) 125
BmgT120I GGNCC 2 cut(s) 71, 125
BmiI GGNNCC 1 cut(s) 126
BmrFI CCNGG 1 cut(s) 101
BmsI GCATC 2 cut(s) 312, 399
BpiI GAAGAC 1 cut(s) 618
BpmI CTGGAG 1 cut(s) 548
Bpu10I CCTNAGC 1 cut(s) 33
BpuEI CTTGAG 1 cut(s) 290
Bsa29I ATCGAT 1 cut(s) 315
Bsc4I CCNNNNNNNGG 1 cut(s) 571
Bse3DI GCAATG 1 cut(s) 144
BseBI CCWGG 1 cut(s) 101
BseCI ATCGAT 1 cut(s) 315
BseGI GGATG 1 cut(s) 327
BseLI CCNNNNNNNGG 1 cut(s) 571
BseMI GCAATG 1 cut(s) 144
BseMII CTCAG 3 cut(s) 24, 344, 647
BseRI GAGGAG 1 cut(s) 370
BseXI GCAGC 4 cut(s) 444, 466, 544, 562
Bsh1285I CGRYCG 2 cut(s) 319, 601
BshFI GGCC 1 cut(s) 73
BshVI ATCGAT 1 cut(s) 315
BsiEI CGRYCG 2 cut(s) 319, 601
BslI CCNNNNNNNGG 1 cut(s) 571
BsmAI GTCTC 2 cut(s) 398, 642
BsmBI CGTCTC 1 cut(s) 398
BsnI GGCC 1 cut(s) 73
Bsp143I GATC 5 cut(s) 103, 198, 241, 316, 580
BspANI GGCC 1 cut(s) 73
BspCNI CTCAG 3 cut(s) 25, 345, 646
BspDI ATCGAT 1 cut(s) 315
BspLI GGNNCC 1 cut(s) 126
BspMAI CTGCAG 1 cut(s) 580
BspPI GGATC 3 cut(s) 111, 193, 249
BsrDI GCAATG 1 cut(s) 144
BssMI GATC 5 cut(s) 103, 198, 241, 316, 580
Bst2UI CCWGG 1 cut(s) 101
Bst4CI ACNGT 2 cut(s) 136, 602
BstC8I GCNNGC 1 cut(s) 151
BstDEI CTNAG 4 cut(s) 19, 33, 353, 633
BstF5I GGATG 1 cut(s) 327
BstKTI GATC 5 cut(s) 106, 201, 244, 319, 583
BstMAI GTCTC 2 cut(s) 398, 642
BstMBI GATC 5 cut(s) 103, 198, 241, 316, 580
BstMCI CGRYCG 2 cut(s) 319, 601
BstMWI GCNNNNNNNGC 2 cut(s) 186, 554
BstNI CCWGG 1 cut(s) 101
BstSCI CCNGG 1 cut(s) 99
BstSFI CTRYAG 1 cut(s) 576
BstV1I GCAGC 4 cut(s) 444, 466, 544, 562
BstV2I GAAGAC 1 cut(s) 618
BstX2I RGATCY 2 cut(s) 198, 580
BstYI RGATCY 2 cut(s) 198, 580
Bsu15I ATCGAT 1 cut(s) 315
BsuRI GGCC 1 cut(s) 73
BsuTUI ATCGAT 1 cut(s) 315
BtsCI GGATG 1 cut(s) 327
Cac8I GCNNGC 1 cut(s) 151
CaiI CAGNNNCTG 3 cut(s) 134, 250, 654
Cfr13I GGNCC 2 cut(s) 71, 125
ClaI ATCGAT 1 cut(s) 315
CviAII CATG 2 cut(s) 157, 551
DdeI CTNAG 4 cut(s) 19, 33, 353, 633
DpnI GATC 5 cut(s) 105, 200, 243, 318, 582
DpnII GATC 5 cut(s) 103, 198, 241, 316, 580
Eco47I GGWCC 1 cut(s) 125
Eco57I CTGAAG 3 cut(s) 380, 564, 611
EcoRII CCWGG 1 cut(s) 99
Esp3I CGTCTC 1 cut(s) 398
FaeI CATG 2 cut(s) 160, 554
FaiI YATR 5 cut(s) 158, 230, 239, 311, 552
FatI CATG 2 cut(s) 156, 550
FblI GTMKAC 1 cut(s) 387
Fnu4HI GCNGC 4 cut(s) 455, 458, 558, 576
FokI GGATG 1 cut(s) 334
Fsp4HI GCNGC 4 cut(s) 455, 458, 558, 576
FspBI CTAG 1 cut(s) 641
GluI GCNGC 4 cut(s) 455, 458, 558, 576
GsuI CTGGAG 1 cut(s) 548
HaeIII GGCC 1 cut(s) 73
Hin1II CATG 2 cut(s) 160, 554
HincII GTYRAC 1 cut(s) 388
HindII GTYRAC 1 cut(s) 388
HindIII AAGCTT 2 cut(s) 178, 218
HinfI GANTC 4 cut(s) 4, 166, 622, 631
HphI GGTGA 1 cut(s) 225
Hpy166II GTNNAC 2 cut(s) 341, 388
Hpy188I TCNGA 4 cut(s) 321, 399, 484, 630
Hpy188III TCNNGA 3 cut(s) 202, 565, 590
Hpy8I GTNNAC 2 cut(s) 341, 388
HpyCH4III ACNGT 2 cut(s) 136, 602
HpyCH4IV ACGT 1 cut(s) 363
HpyCH4V TGCA 6 cut(s) 153, 325, 412, 460, 513, 578
HpyF10VI GCNNNNNNNGC 2 cut(s) 186, 554
HpyF3I CTNAG 4 cut(s) 19, 33, 353, 633
HpySE526I ACGT 1 cut(s) 363
Hsp92II CATG 2 cut(s) 160, 554
Kzo9I GATC 5 cut(s) 103, 198, 241, 316, 580
LmnI GCTCC 3 cut(s) 82, 368, 651
Lsp1109I GCAGC 4 cut(s) 444, 466, 544, 562
LweI GCATC 2 cut(s) 312, 399
MaeI CTAG 1 cut(s) 641
MaeII ACGT 1 cut(s) 363
MaeIII GTNAC 3 cut(s) 231, 359, 644
MalI GATC 5 cut(s) 105, 200, 243, 318, 582
MboI GATC 5 cut(s) 103, 198, 241, 316, 580
MboII GAAGA 7 cut(s) 44, 392, 429, 440, 505, 617, 623
MflI RGATCY 2 cut(s) 198, 580
MluCI AATT 2 cut(s) 468, 503
MlyI GAGTC 1 cut(s) 625
MnlI CCTC 6 cut(s) 28, 72, 265, 348, 478, 572
MseI TTAA 4 cut(s) 195, 281, 335, 417
MslI CAYNNNNRTG 1 cut(s) 161
MspA1I CMGCKG 2 cut(s) 10, 457
MspR9I CCNGG 1 cut(s) 101
MvaI CCWGG 1 cut(s) 101
MwoI GCNNNNNNNGC 2 cut(s) 186, 554
NdeII GATC 5 cut(s) 103, 198, 241, 316, 580
NlaIII CATG 2 cut(s) 160, 554
NlaIV GGNNCC 1 cut(s) 126
NmuCI GTSAC 1 cut(s) 231
PfeI GAWTC 3 cut(s) 4, 166, 622
PflFI GACNNNGTC 1 cut(s) 634
PkrI GCNGC 4 cut(s) 456, 459, 559, 577
Ple19I CGATCG 1 cut(s) 319
PleI GAGTC 1 cut(s) 625
PpsI GAGTC 1 cut(s) 625
PshBI ATTAAT 1 cut(s) 281
Psp6I CCWGG 1 cut(s) 99
PspGI CCWGG 1 cut(s) 99
PspN4I GGNNCC 1 cut(s) 126
PspPI GGNCC 2 cut(s) 71, 125
PstI CTGCAG 1 cut(s) 580
PstNI CAGNNNCTG 3 cut(s) 134, 250, 654
PsuI RGATCY 2 cut(s) 198, 580
PsyI GACNNNGTC 1 cut(s) 634
PvuI CGATCG 1 cut(s) 319
PvuII CAGCTG 2 cut(s) 10, 457
RseI CAYNNNNRTG 1 cut(s) 161
SalI GTCGAC 1 cut(s) 386
SaqAI TTAA 4 cut(s) 195, 281, 335, 417
SatI GCNGC 4 cut(s) 455, 458, 558, 576
Sau3AI GATC 5 cut(s) 103, 198, 241, 316, 580
Sau96I GGNCC 2 cut(s) 71, 125
SchI GAGTC 1 cut(s) 625
ScrFI CCNGG 1 cut(s) 101
SfaNI GCATC 2 cut(s) 312, 399
SfcI CTRYAG 1 cut(s) 576
SinI GGWCC 1 cut(s) 125
SmiMI CAYNNNNRTG 1 cut(s) 161
SmlI CTYRAG 1 cut(s) 269
SmoI CTYRAG 1 cut(s) 269
Sse9I AATT 2 cut(s) 468, 503
SspMI CTAG 1 cut(s) 641
StyD4I CCNGG 1 cut(s) 99
TaaI ACNGT 2 cut(s) 136, 602
TaiI ACGT 1 cut(s) 366
TaqI TCGA 2 cut(s) 315, 387
TasI AATT 2 cut(s) 468, 503
TfiI GAWTC 3 cut(s) 4, 166, 622
Tru1I TTAA 4 cut(s) 195, 281, 335, 417
Tru9I TTAA 4 cut(s) 195, 281, 335, 417
TseFI GTSAC 1 cut(s) 231
TseI GCWGC 4 cut(s) 454, 457, 557, 575
Tsp45I GTSAC 1 cut(s) 231
TspDTI ATGAA 2 cut(s) 267, 298
Tth111I GACNNNGTC 1 cut(s) 634
VpaK11BI GGWCC 1 cut(s) 125
VspI ATTAAT 1 cut(s) 281
XapI RAATTY 1 cut(s) 468
XmiI GTMKAC 1 cut(s) 387
XspI CTAG 1 cut(s) 641
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.