pycom05g15910

B-cell receptor-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0012082
Physical Location & Seq
Forward (+)
19362613 .. 19364919
2307 bp
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UTR
Exon/CDS
Intron
pycom05g15910.1

Sequence Viewer

Length: 660 bp
ATGATTCAACTGTTGTTCGTAGTGCTTTTCGCCGAGGGGGTTGTGGCGTTCCTTCTGCTGGTGAAAATTGGGCCGTTGAGGGAGCTGGTAATAAAGAGCTTGGATCAGATAAAAATGGGTAAGGGTCCGGCCACCATAAAAACGATTGCCGGGACCATGTCTGTGATTTTAATCTCCGACTTCATCAGCATTGTGAAGATCCAGAACAAAGGTGTGAAGCTTGGGACGATGTCGCGGATCGATCAGGTTCTGTGGAGGACCCACCTGCTTGAAGCTTCATTGATGGGTTTTACCCTATTTCTTGGATTCATAATTGATCGAATGCACCATTATCTCAGTAAGCTAATCGGATTGAGGAGTAGCGTGGGAGCTTCAAAAGAAGAACTTGATAGGCTTCAGAAAGAGAAGATACAGCTTAAAGAAAAGGAAAATAAATCGTCCCAAGAAATCAAGCAGCTGCAAGACAAAATCTCAACTCTAACAGAGGATTTGAAGAAGCTGAAATTGGAATGTGCAGAGAAGGATAAAAGCGTCGAAACTGTGGAATCCCATGTTGCCTCCCTCCAAAAACAGGCTGCAGATCTACTTCTCGAATACGATCGCTTGTTAGAAGACAACCAAAATCTTCAGACTCAGTCTCTAGGTTATAGGATCAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 ko05165 map04141 map05165
Pfam Domains
Protein Families
Bap31

Protein Analysis

220

Amino Acids

24.79

Weight (kDa)

9.18

Isoelectric Point (pI)

39.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF724 PF05266 102 - 201 2.9e-07 Protein of unknown function (DUF724)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012082)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07190 AT5G48660 AT5G48660
fragaria_vesca FvH4_2g18660 FvH4_2g18660
malus_domestica MD05G1172500.v1.1 MD10G1160700.v1.1
prunus_persica Prupe.8G199900_v2.0.a1
pyrus_communis pycom05g15910 pycom10g13890
rosa_chinensis RchiOBHm_Chr6g0284221
rosa_laevigata RLG00000012755
rosa_roxburghii Rroxscaffold_7G00184770
rosa_rugosa Rorug06G0162000
rosa_samantha Rh6AG274900 Rh6BG275400 Rh6CG277100 Rh6DG269800
rosa_wichuraiana Rw6G023650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 273
Acc36I ACCTGC 1 cut(s) 273
AccII CGCG 1 cut(s) 235
AciI CCGC 1 cut(s) 235
AclWI GGATC 4 cut(s) 111, 193, 245, 659
AcoI YGGCCR 1 cut(s) 129
AcuI CTGAAG 2 cut(s) 380, 611
AfiI CCNNNNNNNGG 2 cut(s) 58, 571
AgsI TTSAA 4 cut(s) 8, 272, 375, 493
AjuI GAANNNNNNNTTGG 2 cut(s) 488, 520
AluBI AGCT 9 cut(s) 85, 99, 220, 275, 343, 371, 415, 457, 499
AluI AGCT 9 cut(s) 85, 99, 220, 275, 343, 371, 415, 457, 499
Alw26I GTCTC 1 cut(s) 642
AlwI GGATC 4 cut(s) 111, 193, 245, 659
AlwNI CAGNNNCTG 1 cut(s) 250
AoxI GGCC 2 cut(s) 71, 129
ApeKI GCWGC 3 cut(s) 454, 457, 575
AspS9I GGNCC 4 cut(s) 71, 125, 153, 258
AsuC2I CCSGG 1 cut(s) 151
AsuHPI GGTGA 1 cut(s) 73
AvaII GGWCC 3 cut(s) 125, 153, 258
BbsI GAAGAC 1 cut(s) 618
BbvI GCAGC 3 cut(s) 444, 466, 562
BccI CCATC 1 cut(s) 277
BceAI ACGGC 1 cut(s) 58
BcnI CCSGG 1 cut(s) 151
BcoDI GTCTC 1 cut(s) 642
BfaI CTAG 1 cut(s) 641
BfmI CTRYAG 1 cut(s) 576
BfuAI ACCTGC 1 cut(s) 273
BglII AGATCT 1 cut(s) 580
BisI GCNGC 3 cut(s) 455, 458, 576
BlsI GCNGC 3 cut(s) 456, 459, 577
Bme1390I CCNGG 1 cut(s) 151
Bme18I GGWCC 3 cut(s) 125, 153, 258
BmgT120I GGNCC 4 cut(s) 71, 125, 153, 258
BmiI GGNNCC 3 cut(s) 126, 154, 260
BmrFI CCNGG 1 cut(s) 151
BpiI GAAGAC 1 cut(s) 618
BpuMI CCSGG 1 cut(s) 151
Bsa29I ATCGAT 1 cut(s) 240
BsaBI GATNNNNATC 1 cut(s) 170
BsaJI CCNNGG 1 cut(s) 33
Bsc4I CCNNNNNNNGG 2 cut(s) 58, 571
Bse8I GATNNNNATC 1 cut(s) 170
BseCI ATCGAT 1 cut(s) 240
BseDI CCNNGG 1 cut(s) 33
BseJI GATNNNNATC 1 cut(s) 170
BseLI CCNNNNNNNGG 2 cut(s) 58, 571
BseMII CTCAG 2 cut(s) 349, 647
BseRI GAGGAG 1 cut(s) 370
BseXI GCAGC 3 cut(s) 444, 466, 562
BsgI GTGCAG 1 cut(s) 534
Bsh1236I CGCG 1 cut(s) 235
Bsh1285I CGRYCG 1 cut(s) 601
BshFI GGCC 2 cut(s) 73, 131
BshVI ATCGAT 1 cut(s) 240
BsiEI CGRYCG 1 cut(s) 601
BsiSI CCGG 2 cut(s) 128, 150
BslFI GGGAC 3 cut(s) 166, 238, 424
BslI CCNNNNNNNGG 2 cut(s) 58, 571
BsmAI GTCTC 1 cut(s) 642
BsmFI GGGAC 3 cut(s) 166, 238, 424
BsmI GAATGC 1 cut(s) 327
BsnI GGCC 2 cut(s) 73, 131
Bsp143I GATC 8 cut(s) 103, 198, 237, 241, 316, 580, 598, 651
BspACI CCGC 1 cut(s) 235
BspANI GGCC 2 cut(s) 73, 131
BspCNI CTCAG 2 cut(s) 348, 646
BspDI ATCGAT 1 cut(s) 240
BspFNI CGCG 1 cut(s) 235
BspLI GGNNCC 3 cut(s) 126, 154, 260
BspMAI CTGCAG 1 cut(s) 580
BspMI ACCTGC 1 cut(s) 273
BspPI GGATC 4 cut(s) 111, 193, 245, 659
BssECI CCNNGG 1 cut(s) 33
BssMI GATC 8 cut(s) 103, 198, 237, 241, 316, 580, 598, 651
Bst4CI ACNGT 2 cut(s) 12, 541
BstDEI CTNAG 2 cut(s) 335, 633
BstFNI CGCG 1 cut(s) 235
BstKTI GATC 8 cut(s) 106, 201, 240, 244, 319, 583, 601, 654
BstMAI GTCTC 1 cut(s) 642
BstMBI GATC 8 cut(s) 103, 198, 237, 241, 316, 580, 598, 651
BstMCI CGRYCG 1 cut(s) 601
BstSCI CCNGG 1 cut(s) 149
BstSFI CTRYAG 1 cut(s) 576
BstUI CGCG 1 cut(s) 235
BstV1I GCAGC 3 cut(s) 444, 466, 562
BstV2I GAAGAC 1 cut(s) 618
BstX2I RGATCY 2 cut(s) 198, 580
BstYI RGATCY 2 cut(s) 198, 580
Bsu15I ATCGAT 1 cut(s) 240
BsuRI GGCC 2 cut(s) 73, 131
BsuTUI ATCGAT 1 cut(s) 240
BveI ACCTGC 1 cut(s) 273
CaiI CAGNNNCTG 1 cut(s) 250
Cfr13I GGNCC 4 cut(s) 71, 125, 153, 258
ClaI ATCGAT 1 cut(s) 240
CseI GACGC 1 cut(s) 520
CviAII CATG 2 cut(s) 157, 551
DdeI CTNAG 2 cut(s) 335, 633
DpnI GATC 8 cut(s) 105, 200, 239, 243, 318, 582, 600, 653
DpnII GATC 8 cut(s) 103, 198, 237, 241, 316, 580, 598, 651
EaeI YGGCCR 1 cut(s) 129
Eco47I GGWCC 3 cut(s) 125, 153, 258
Eco57I CTGAAG 2 cut(s) 380, 611
EcoO109I RGGNCCY 1 cut(s) 258
FaeI CATG 2 cut(s) 160, 554
FaiI YATR 5 cut(s) 137, 158, 311, 552, 648
FalI AAGNNNNNCTT 2 cut(s) 369, 401
FaqI GGGAC 3 cut(s) 166, 238, 424
FatI CATG 2 cut(s) 156, 550
Fnu4HI GCNGC 3 cut(s) 455, 458, 576
Fsp4HI GCNGC 3 cut(s) 455, 458, 576
FspBI CTAG 1 cut(s) 641
GluI GCNGC 3 cut(s) 455, 458, 576
HaeIII GGCC 2 cut(s) 73, 131
HapII CCGG 2 cut(s) 128, 150
HgaI GACGC 1 cut(s) 520
Hin1II CATG 2 cut(s) 160, 554
HindIII AAGCTT 2 cut(s) 218, 273
HinfI GANTC 4 cut(s) 4, 306, 545, 631
HpaII CCGG 2 cut(s) 128, 150
HphI GGTGA 1 cut(s) 73
Hpy188I TCNGA 5 cut(s) 108, 178, 350, 399, 630
Hpy188III TCNNGA 2 cut(s) 202, 590
Hpy99I CGWCG 1 cut(s) 536
HpyAV CCTTC 2 cut(s) 62, 514
HpyCH4III ACNGT 2 cut(s) 12, 541
HpyCH4V TGCA 4 cut(s) 325, 460, 515, 578
HpyF3I CTNAG 2 cut(s) 335, 633
Hsp92II CATG 2 cut(s) 160, 554
Kzo9I GATC 8 cut(s) 103, 198, 237, 241, 316, 580, 598, 651
LmnI GCTCC 2 cut(s) 82, 368
LpnPI CCDG 9 cut(s) 44, 71, 141, 163, 215, 230, 278, 557, 640
Lsp1109I GCAGC 3 cut(s) 444, 466, 562
MaeI CTAG 1 cut(s) 641
MalI GATC 8 cut(s) 105, 200, 239, 243, 318, 582, 600, 653
MboI GATC 8 cut(s) 103, 198, 237, 241, 316, 580, 598, 651
MboII GAAGA 6 cut(s) 208, 392, 418, 505, 617, 623
MflI RGATCY 2 cut(s) 198, 580
MluCI AATT 3 cut(s) 66, 312, 503
MlyI GAGTC 1 cut(s) 625
MmeI TCCRAC 1 cut(s) 201
MnlI CCTC 7 cut(s) 28, 72, 249, 348, 478, 568, 572
MseI TTAA 2 cut(s) 170, 417
MslI CAYNNNNRTG 1 cut(s) 161
MspA1I CMGCKG 1 cut(s) 457
MspI CCGG 2 cut(s) 128, 150
MspR9I CCNGG 1 cut(s) 151
Mva1269I GAATGC 1 cut(s) 327
MvnI CGCG 1 cut(s) 235
NciI CCSGG 1 cut(s) 151
NdeII GATC 8 cut(s) 103, 198, 237, 241, 316, 580, 598, 651
NlaIII CATG 2 cut(s) 160, 554
NlaIV GGNNCC 3 cut(s) 126, 154, 260
NmeAIII GCCGAG 1 cut(s) 58
PaqCI CACCTGC 1 cut(s) 273
PctI GAATGC 1 cut(s) 327
PfeI GAWTC 3 cut(s) 4, 306, 545
PflFI GACNNNGTC 3 cut(s) 157, 229, 634
PkrI GCNGC 3 cut(s) 456, 459, 577
Ple19I CGATCG 1 cut(s) 601
PleI GAGTC 1 cut(s) 625
PpsI GAGTC 1 cut(s) 625
PpuMI RGGWCCY 1 cut(s) 258
Psp5II RGGWCCY 1 cut(s) 258
PspN4I GGNNCC 3 cut(s) 126, 154, 260
PspPI GGNCC 4 cut(s) 71, 125, 153, 258
PspPPI RGGWCCY 1 cut(s) 258
PstI CTGCAG 1 cut(s) 580
PstNI CAGNNNCTG 1 cut(s) 250
PsuI RGATCY 2 cut(s) 198, 580
PsyI GACNNNGTC 3 cut(s) 157, 229, 634
PvuI CGATCG 1 cut(s) 601
PvuII CAGCTG 1 cut(s) 457
RseI CAYNNNNRTG 1 cut(s) 161
SaqAI TTAA 2 cut(s) 170, 417
SatI GCNGC 3 cut(s) 455, 458, 576
Sau3AI GATC 8 cut(s) 103, 198, 237, 241, 316, 580, 598, 651
Sau96I GGNCC 4 cut(s) 71, 125, 153, 258
SchI GAGTC 1 cut(s) 625
ScrFI CCNGG 1 cut(s) 151
SfcI CTRYAG 1 cut(s) 576
SinI GGWCC 3 cut(s) 125, 153, 258
SmiMI CAYNNNNRTG 1 cut(s) 161
Sse9I AATT 3 cut(s) 66, 312, 503
SsiI CCGC 1 cut(s) 235
SspMI CTAG 1 cut(s) 641
StyD4I CCNGG 1 cut(s) 149
TaaI ACNGT 2 cut(s) 12, 541
TaqI TCGA 4 cut(s) 240, 319, 534, 591
TasI AATT 3 cut(s) 66, 312, 503
TfiI GAWTC 3 cut(s) 4, 306, 545
Tru1I TTAA 2 cut(s) 170, 417
Tru9I TTAA 2 cut(s) 170, 417
TseI GCWGC 3 cut(s) 454, 457, 575
TspDTI ATGAA 3 cut(s) 172, 267, 298
Tth111I GACNNNGTC 3 cut(s) 157, 229, 634
VpaK11BI GGWCC 3 cut(s) 125, 153, 258
XspI CTAG 1 cut(s) 641
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.