AT5G48660

B-cell receptor-associated protein 31-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0012082
Physical Location & Seq
Forward (+)
19736540 .. 19738538
1999 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G48660.1

Sequence Viewer

Length: 660 bp
ATGATTCAGTTACTGTTTCTAGTTCTATTTGTGGAAGGTGCGATTGCATTCTTACTGTTGATAAAGATTGGTCCTTTGAGAGAGCTTGTGATTAAAAGTCTTGACCAGATGAAGATGGGTAAAGGTCCTGCCACTGTGAAAACAATCGCTGGAACTATGTCTGTTATTCTCTTTTCTAATCTTATGAGCATTGTCAAGATCCAGAATAAAGGTGCAAAGCTTGGGACAATGTCTCCTATGGATCAGGTTCTTTGGAGAACACACTTGCTTGAAGCTTCTTTATTGGGAGTCGTACTTTTTCTCGGCTTTATAATTGACAGAATGCATCACTACCTCAGAAAGCTAATCAATTTGAGAAGCAACGTCGGATCATCGAAAGAAGAACTTGAACAGCTCCAGAAAGAAAGAACCGAACTGAAGGAGAAAGAGGAGAAAGCATCCAAGGAAATCAAGCAGTTGCAAGTAAAATTGTCATCTATTACAGAGAGACTAAAGAAAGCAGAGACTGAGTCAAAAGAGAAAGAGAAGAAACTCGAAACTGCTGAAACACATGTTACGGCGTTACAGAAACAGTCTGCAGAGCTGCTTCTAGAGTATGATAGATTGCTAGAAGATAACCAACATCTCCAAAGCCAAATCTTGGGGAAAACCAAGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 ko05165 map04141 map05165
Pfam Domains
Protein Families
Bap31

Protein Analysis

219

Amino Acids

24.88

Weight (kDa)

9.43

Isoelectric Point (pI)

47.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012082)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07190 AT5G48660 AT5G48660
fragaria_vesca FvH4_2g18660 FvH4_2g18660
malus_domestica MD05G1172500.v1.1 MD10G1160700.v1.1
prunus_persica Prupe.8G199900_v2.0.a1
pyrus_communis pycom05g15910 pycom10g13890
rosa_chinensis RchiOBHm_Chr6g0284221
rosa_laevigata RLG00000012755
rosa_roxburghii Rroxscaffold_7G00184770
rosa_rugosa Rorug06G0162000
rosa_samantha Rh6AG274900 Rh6BG275400 Rh6CG277100 Rh6DG269800
rosa_wichuraiana Rw6G023650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 311
AccB7I CCANNNNNTGG 1 cut(s) 640
AclWI GGATC 3 cut(s) 193, 249, 376
AcuI CTGAAG 1 cut(s) 437
AfaI GTAC 1 cut(s) 294
AfiI CCNNNNNNNGG 1 cut(s) 640
AflIII ACRYGT 1 cut(s) 550
AgsI TTSAA 2 cut(s) 272, 389
AluBI AGCT 7 cut(s) 85, 220, 275, 343, 394, 583, 657
AluI AGCT 7 cut(s) 85, 220, 275, 343, 394, 583, 657
Alw26I GTCTC 3 cut(s) 237, 481, 497
AlwI GGATC 3 cut(s) 193, 249, 376
AlwNI CAGNNNCTG 2 cut(s) 13, 506
ApeKI GCWGC 1 cut(s) 583
AspS9I GGNCC 2 cut(s) 71, 125
AvaII GGWCC 2 cut(s) 71, 125
BbvI GCAGC 1 cut(s) 570
BccI CCATC 1 cut(s) 109
BceAI ACGGC 1 cut(s) 573
BcoDI GTCTC 3 cut(s) 237, 481, 497
BfaI CTAG 3 cut(s) 20, 590, 608
BfmI CTRYAG 1 cut(s) 576
BisI GCNGC 1 cut(s) 584
BlsI GCNGC 1 cut(s) 585
Bme18I GGWCC 2 cut(s) 71, 125
BmgT120I GGNCC 2 cut(s) 71, 125
BmsI GCATC 2 cut(s) 334, 446
BpmI CTGGAG 1 cut(s) 380
BsaJI CCNNGG 1 cut(s) 441
BsaXI ACNNNNNCTCC 2 cut(s) 217, 247
Bsc4I CCNNNNNNNGG 1 cut(s) 640
BseDI CCNNGG 1 cut(s) 441
BseGI GGATG 1 cut(s) 437
BseLI CCNNNNNNNGG 1 cut(s) 640
BseMII CTCAG 2 cut(s) 349, 498
BseRI GAGGAG 1 cut(s) 443
BseXI GCAGC 1 cut(s) 570
BslFI GGGAC 1 cut(s) 238
BslI CCNNNNNNNGG 1 cut(s) 640
BsmAI GTCTC 3 cut(s) 237, 481, 497
BsmFI GGGAC 1 cut(s) 238
BsmI GAATGC 2 cut(s) 47, 327
Bsp143I GATC 3 cut(s) 198, 241, 368
BspCNI CTCAG 2 cut(s) 348, 499
BspMAI CTGCAG 1 cut(s) 580
BspPI GGATC 3 cut(s) 193, 249, 376
BssECI CCNNGG 1 cut(s) 441
BssMI GATC 3 cut(s) 198, 241, 368
BssT1I CCWWGG 1 cut(s) 441
Bst4CI ACNGT 4 cut(s) 15, 57, 136, 573
BstDEI CTNAG 2 cut(s) 335, 507
BstF5I GGATG 1 cut(s) 437
BstKTI GATC 3 cut(s) 201, 244, 371
BstMAI GTCTC 3 cut(s) 237, 481, 497
BstMBI GATC 3 cut(s) 198, 241, 368
BstNSI RCATGY 1 cut(s) 554
BstSFI CTRYAG 1 cut(s) 576
BstV1I GCAGC 1 cut(s) 570
BstX2I RGATCY 1 cut(s) 198
BstYI RGATCY 1 cut(s) 198
BtsCI GGATG 1 cut(s) 437
BtsIMutI CAGTG 1 cut(s) 132
CaiI CAGNNNCTG 2 cut(s) 13, 506
Cfr13I GGNCC 2 cut(s) 71, 125
Csp6I GTAC 1 cut(s) 293
CviAII CATG 1 cut(s) 551
CviJI RGCY 9 cut(s) 85, 220, 275, 306, 343, 394, 583, 633, 657
CviKI_1 RGCY 9 cut(s) 85, 220, 275, 306, 343, 394, 583, 633, 657
CviQI GTAC 1 cut(s) 293
DdeI CTNAG 2 cut(s) 335, 507
DpnI GATC 3 cut(s) 200, 243, 370
DpnII GATC 3 cut(s) 198, 241, 368
Eco130I CCWWGG 1 cut(s) 441
Eco47I GGWCC 2 cut(s) 71, 125
Eco57I CTGAAG 1 cut(s) 437
EcoO109I RGGNCCY 1 cut(s) 125
EcoT14I CCWWGG 1 cut(s) 441
EcoT22I ATGCAT 1 cut(s) 327
ErhI CCWWGG 1 cut(s) 441
FaeI CATG 1 cut(s) 554
FaiI YATR 6 cut(s) 158, 185, 239, 311, 552, 597
FalI AAGNNNNNCTT 2 cut(s) 369, 401
FaqI GGGAC 1 cut(s) 238
FatI CATG 1 cut(s) 550
Fnu4HI GCNGC 1 cut(s) 584
FokI GGATG 1 cut(s) 424
Fsp4HI GCNGC 1 cut(s) 584
FspBI CTAG 3 cut(s) 20, 590, 608
GluI GCNGC 1 cut(s) 584
GsuI CTGGAG 1 cut(s) 380
Hin1II CATG 1 cut(s) 554
HindIII AAGCTT 2 cut(s) 218, 273
HinfI GANTC 3 cut(s) 4, 288, 509
Hpy188I TCNGA 2 cut(s) 338, 368
Hpy188III TCNNGA 5 cut(s) 101, 196, 202, 397, 590
Hpy99I CGWCG 1 cut(s) 368
HpyAV CCTTC 2 cut(s) 29, 412
HpyCH4III ACNGT 4 cut(s) 15, 57, 136, 573
HpyCH4IV ACGT 1 cut(s) 363
HpyCH4V TGCA 5 cut(s) 47, 215, 325, 460, 578
HpyF3I CTNAG 2 cut(s) 335, 507
HpySE526I ACGT 1 cut(s) 363
Hsp92II CATG 1 cut(s) 554
Kzo9I GATC 3 cut(s) 198, 241, 368
LmnI GCTCC 1 cut(s) 399
LpnPI CCDG 6 cut(s) 119, 135, 141, 215, 230, 410
Lsp1109I GCAGC 1 cut(s) 570
LweI GCATC 2 cut(s) 334, 446
MaeI CTAG 3 cut(s) 20, 590, 608
MaeII ACGT 1 cut(s) 363
MaeIII GTNAC 3 cut(s) 9, 553, 561
MalI GATC 3 cut(s) 200, 243, 370
MboI GATC 3 cut(s) 198, 241, 368
MboII GAAGA 4 cut(s) 124, 392, 538, 623
MflI RGATCY 1 cut(s) 198
MluCI AATT 3 cut(s) 312, 349, 467
MlyI GAGTC 2 cut(s) 297, 518
MmeI TCCRAC 1 cut(s) 346
MnlI CCTC 2 cut(s) 344, 421
Mph1103I ATGCAT 1 cut(s) 327
MseI TTAA 1 cut(s) 93
Mva1269I GAATGC 2 cut(s) 47, 327
NdeII GATC 3 cut(s) 198, 241, 368
NlaIII CATG 1 cut(s) 554
NmeAIII GCCGAG 1 cut(s) 282
NsiI ATGCAT 1 cut(s) 327
NspI RCATGY 1 cut(s) 554
PciI ACATGT 1 cut(s) 550
PctI GAATGC 2 cut(s) 47, 327
PfeI GAWTC 1 cut(s) 4
PflFI GACNNNGTC 2 cut(s) 229, 508
PflMI CCANNNNNTGG 1 cut(s) 640
PkrI GCNGC 1 cut(s) 585
PleI GAGTC 2 cut(s) 296, 517
PpsI GAGTC 2 cut(s) 296, 517
PpuMI RGGWCCY 1 cut(s) 125
PscI ACATGT 1 cut(s) 550
PsiI TTATAA 1 cut(s) 311
Psp5II RGGWCCY 1 cut(s) 125
PspPI GGNCC 2 cut(s) 71, 125
PspPPI RGGWCCY 1 cut(s) 125
PstI CTGCAG 1 cut(s) 580
PstNI CAGNNNCTG 2 cut(s) 13, 506
PsuI RGATCY 1 cut(s) 198
PsyI GACNNNGTC 2 cut(s) 229, 508
RsaI GTAC 1 cut(s) 294
RsaNI GTAC 1 cut(s) 293
SaqAI TTAA 1 cut(s) 93
SatI GCNGC 1 cut(s) 584
Sau3AI GATC 3 cut(s) 198, 241, 368
Sau96I GGNCC 2 cut(s) 71, 125
SchI GAGTC 2 cut(s) 297, 518
SfaNI GCATC 2 cut(s) 334, 446
SfcI CTRYAG 1 cut(s) 576
SinI GGWCC 2 cut(s) 71, 125
Sse9I AATT 3 cut(s) 312, 349, 467
SspMI CTAG 3 cut(s) 20, 590, 608
StyI CCWWGG 1 cut(s) 441
TaaI ACNGT 4 cut(s) 15, 57, 136, 573
TaiI ACGT 1 cut(s) 366
TaqI TCGA 2 cut(s) 374, 534
TasI AATT 3 cut(s) 312, 349, 467
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 1 cut(s) 93
Tru9I TTAA 1 cut(s) 93
TscAI CASTG 1 cut(s) 139
TseI GCWGC 1 cut(s) 583
TspDTI ATGAA 1 cut(s) 125
TspRI CASTG 1 cut(s) 139
Tth111I GACNNNGTC 2 cut(s) 229, 508
Van91I CCANNNNNTGG 1 cut(s) 640
VpaK11BI GGWCC 2 cut(s) 71, 125
XbaI TCTAGA 1 cut(s) 589
XceI RCATGY 1 cut(s) 554
XspI CTAG 3 cut(s) 20, 590, 608
Zsp2I ATGCAT 1 cut(s) 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.