MD10G1160700.v1.1

B-cell receptor-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0012082
Physical Location & Seq
Forward (+)
25152020 .. 25156263
4244 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1160700.v1.1.491

Sequence Viewer

Length: 657 bp
ATGATTCAGCTGTTGTTCGTAGTGCTTTTCGCCGAGGGGGTAGTGGCGTTCCTTATGCTGGTGAAAATTGGGCCGTTGAGGGAGCTGGTGATAAAGAGCTTGGATCAGGTAAAAATGGGCAAGGGTCCAGCCACTGTAAAAACGATTGCAGGGACCATGTCTGTGATTTTAATCTCGAGCTTCATCAGCATTGTGAAGATCCAGAACAAAGGTGTGAAGCTTGGGACTATGTCGCCGATGGATCAGGTTCTGTGGAGGACCCACCTGCTTGAAGCTTCATTGATGGGTTTTACCCTATTTCTTGGATTCATAATTGATCGGATGCACCATTATCTCAGTAAGCTAATTGGATTGAGGGGTAGTGTGGGAGCTTCAAAAGAAGAACTTGACAGGCTTCAAAAAGAGACGATACAACTTAAAGAAAAGGAAGAGAAAGCTTCCCAAGAAGTCAAGCAGCTGCAAGCCAAAATCTCAACTCTAACAGAGGATTTGAAGAAGCTGAAATTGGAATGTGCGGAGAAAGATAAAAGCGTTGAAACTGCCGAATGCCATGTTGCTTCCCTCCAGAAACAGGCTGCAGATCTACTTCTCGAATATGATCGCTTGTTGGAAGACAACCAAAATCTTCAGAATCAGTCTCTAGGTTATAGGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 ko05165 map04141 map05165
Pfam Domains
Protein Families
Bap31

Protein Analysis

219

Amino Acids

24.41

Weight (kDa)

8.74

Isoelectric Point (pI)

41.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF724 PF05266 102 - 201 1e-06 Protein of unknown function (DUF724)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012082)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07190 AT5G48660 AT5G48660
fragaria_vesca FvH4_2g18660 FvH4_2g18660
malus_domestica MD05G1172500.v1.1 MD10G1160700.v1.1
prunus_persica Prupe.8G199900_v2.0.a1
pyrus_communis pycom05g15910 pycom10g13890
rosa_chinensis RchiOBHm_Chr6g0284221
rosa_laevigata RLG00000012755
rosa_roxburghii Rroxscaffold_7G00184770
rosa_rugosa Rorug06G0162000
rosa_samantha Rh6AG274900 Rh6BG275400 Rh6CG277100 Rh6DG269800
rosa_wichuraiana Rw6G023650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 273
Acc36I ACCTGC 1 cut(s) 273
AciI CCGC 1 cut(s) 515
AclWI GGATC 3 cut(s) 111, 193, 249
AcuI CTGAAG 1 cut(s) 611
AfiI CCNNNNNNNGG 2 cut(s) 58, 571
AgsI TTSAA 5 cut(s) 272, 375, 398, 493, 536
AjuI GAANNNNNNNTTGG 2 cut(s) 488, 520
Alw26I GTCTC 2 cut(s) 398, 642
AlwI GGATC 3 cut(s) 111, 193, 249
AlwNI CAGNNNCTG 2 cut(s) 134, 250
Ama87I CYCGRG 1 cut(s) 175
AoxI GGCC 1 cut(s) 71
ApeKI GCWGC 3 cut(s) 454, 457, 575
AspS9I GGNCC 4 cut(s) 71, 125, 153, 258
AsuHPI GGTGA 2 cut(s) 73, 100
AvaI CYCGRG 1 cut(s) 175
AvaII GGWCC 3 cut(s) 125, 153, 258
BbsI GAAGAC 1 cut(s) 618
BbvI GCAGC 3 cut(s) 444, 466, 562
BccI CCATC 2 cut(s) 232, 277
BceAI ACGGC 1 cut(s) 58
BcoDI GTCTC 2 cut(s) 398, 642
BfaI CTAG 1 cut(s) 641
BfmI CTRYAG 1 cut(s) 576
BfuAI ACCTGC 1 cut(s) 273
BglII AGATCT 1 cut(s) 580
BisI GCNGC 3 cut(s) 455, 458, 576
BlsI GCNGC 3 cut(s) 456, 459, 577
Bme18I GGWCC 3 cut(s) 125, 153, 258
BmeT110I CYCGRG 1 cut(s) 175
BmgT120I GGNCC 4 cut(s) 71, 125, 153, 258
BmiI GGNNCC 3 cut(s) 126, 154, 260
BmsI GCATC 1 cut(s) 312
BpiI GAAGAC 1 cut(s) 618
BpmI CTGGAG 1 cut(s) 548
BsaBI GATNNNNATC 1 cut(s) 170
BsaJI CCNNGG 1 cut(s) 33
Bsc4I CCNNNNNNNGG 2 cut(s) 58, 571
Bse8I GATNNNNATC 1 cut(s) 170
BseDI CCNNGG 1 cut(s) 33
BseGI GGATG 1 cut(s) 327
BseJI GATNNNNATC 1 cut(s) 170
BseLI CCNNNNNNNGG 2 cut(s) 58, 571
BseMII CTCAG 1 cut(s) 349
BseXI GCAGC 3 cut(s) 444, 466, 562
BshFI GGCC 1 cut(s) 73
BsiHKCI CYCGRG 1 cut(s) 175
BslFI GGGAC 2 cut(s) 166, 238
BslI CCNNNNNNNGG 2 cut(s) 58, 571
BsmAI GTCTC 2 cut(s) 398, 642
BsmBI CGTCTC 1 cut(s) 398
BsmFI GGGAC 2 cut(s) 166, 238
BsmI GAATGC 1 cut(s) 551
BsnI GGCC 1 cut(s) 73
BsoBI CYCGRG 1 cut(s) 175
Bsp143I GATC 6 cut(s) 103, 198, 241, 316, 580, 598
BspACI CCGC 1 cut(s) 515
BspANI GGCC 1 cut(s) 73
BspCNI CTCAG 1 cut(s) 348
BspLI GGNNCC 3 cut(s) 126, 154, 260
BspMAI CTGCAG 1 cut(s) 580
BspMI ACCTGC 1 cut(s) 273
BspPI GGATC 3 cut(s) 111, 193, 249
BssECI CCNNGG 1 cut(s) 33
BssMI GATC 6 cut(s) 103, 198, 241, 316, 580, 598
Bst4CI ACNGT 1 cut(s) 136
Bst6I CTCTTC 1 cut(s) 423
BstC8I GCNNGC 1 cut(s) 462
BstDEI CTNAG 1 cut(s) 335
BstF5I GGATG 1 cut(s) 327
BstKTI GATC 6 cut(s) 106, 201, 244, 319, 583, 601
BstMAI GTCTC 2 cut(s) 398, 642
BstMBI GATC 6 cut(s) 103, 198, 241, 316, 580, 598
BstMWI GCNNNNNNNGC 1 cut(s) 186
BstSFI CTRYAG 1 cut(s) 576
BstV1I GCAGC 3 cut(s) 444, 466, 562
BstV2I GAAGAC 1 cut(s) 618
BstX2I RGATCY 2 cut(s) 198, 580
BstYI RGATCY 2 cut(s) 198, 580
BsuRI GGCC 1 cut(s) 73
BtsCI GGATG 1 cut(s) 327
BtsIMutI CAGTG 1 cut(s) 132
BveI ACCTGC 1 cut(s) 273
Cac8I GCNNGC 1 cut(s) 462
CaiI CAGNNNCTG 2 cut(s) 134, 250
Cfr13I GGNCC 4 cut(s) 71, 125, 153, 258
CviAII CATG 2 cut(s) 157, 551
DdeI CTNAG 1 cut(s) 335
DpnI GATC 6 cut(s) 105, 200, 243, 318, 582, 600
DpnII GATC 6 cut(s) 103, 198, 241, 316, 580, 598
Eam1104I CTCTTC 1 cut(s) 423
EarI CTCTTC 1 cut(s) 423
Eco47I GGWCC 3 cut(s) 125, 153, 258
Eco57I CTGAAG 1 cut(s) 611
Eco88I CYCGRG 1 cut(s) 175
EcoO109I RGGNCCY 1 cut(s) 258
Esp3I CGTCTC 1 cut(s) 398
FaeI CATG 2 cut(s) 160, 554
FaiI YATR 7 cut(s) 56, 158, 230, 311, 552, 597, 648
FalI AAGNNNNNCTT 2 cut(s) 369, 401
FaqI GGGAC 2 cut(s) 166, 238
FatI CATG 2 cut(s) 156, 550
Fnu4HI GCNGC 3 cut(s) 455, 458, 576
FokI GGATG 1 cut(s) 334
Fsp4HI GCNGC 3 cut(s) 455, 458, 576
FspBI CTAG 1 cut(s) 641
GluI GCNGC 3 cut(s) 455, 458, 576
GsuI CTGGAG 1 cut(s) 548
HaeIII GGCC 1 cut(s) 73
Hin1II CATG 2 cut(s) 160, 554
HindIII AAGCTT 3 cut(s) 218, 273, 435
HinfI GANTC 3 cut(s) 4, 306, 631
HphI GGTGA 2 cut(s) 73, 100
Hpy188I TCNGA 2 cut(s) 321, 630
Hpy188III TCNNGA 4 cut(s) 175, 202, 565, 590
HpyCH4III ACNGT 1 cut(s) 136
HpyCH4V TGCA 4 cut(s) 149, 325, 460, 578
HpyF10VI GCNNNNNNNGC 1 cut(s) 186
HpyF3I CTNAG 1 cut(s) 335
Hsp92II CATG 2 cut(s) 160, 554
Kzo9I GATC 6 cut(s) 103, 198, 241, 316, 580, 598
LmnI GCTCC 3 cut(s) 82, 368, 651
Lsp1109I GCAGC 3 cut(s) 444, 466, 562
LweI GCATC 1 cut(s) 312
MaeI CTAG 1 cut(s) 641
MalI GATC 6 cut(s) 105, 200, 243, 318, 582, 600
MboI GATC 6 cut(s) 103, 198, 241, 316, 580, 598
MboII GAAGA 6 cut(s) 208, 392, 440, 505, 617, 623
MflI RGATCY 2 cut(s) 198, 580
MluCI AATT 4 cut(s) 66, 312, 345, 503
MmeI TCCRAC 1 cut(s) 588
MnlI CCTC 6 cut(s) 28, 72, 249, 348, 478, 572
MseI TTAA 2 cut(s) 170, 417
MslI CAYNNNNRTG 1 cut(s) 161
MspA1I CMGCKG 2 cut(s) 10, 457
Mva1269I GAATGC 1 cut(s) 551
MwoI GCNNNNNNNGC 1 cut(s) 186
NdeII GATC 6 cut(s) 103, 198, 241, 316, 580, 598
NlaIII CATG 2 cut(s) 160, 554
NlaIV GGNNCC 3 cut(s) 126, 154, 260
NmeAIII GCCGAG 1 cut(s) 58
PaeR7I CTCGAG 1 cut(s) 175
PaqCI CACCTGC 1 cut(s) 273
PctI GAATGC 1 cut(s) 551
PfeI GAWTC 3 cut(s) 4, 306, 631
PflFI GACNNNGTC 2 cut(s) 157, 229
PkrI GCNGC 3 cut(s) 456, 459, 577
PpuMI RGGWCCY 1 cut(s) 258
Psp5II RGGWCCY 1 cut(s) 258
PspN4I GGNNCC 3 cut(s) 126, 154, 260
PspPI GGNCC 4 cut(s) 71, 125, 153, 258
PspPPI RGGWCCY 1 cut(s) 258
PstI CTGCAG 1 cut(s) 580
PstNI CAGNNNCTG 2 cut(s) 134, 250
PsuI RGATCY 2 cut(s) 198, 580
PsyI GACNNNGTC 2 cut(s) 157, 229
PvuII CAGCTG 2 cut(s) 10, 457
RseI CAYNNNNRTG 1 cut(s) 161
SaqAI TTAA 2 cut(s) 170, 417
SatI GCNGC 3 cut(s) 455, 458, 576
Sau3AI GATC 6 cut(s) 103, 198, 241, 316, 580, 598
Sau96I GGNCC 4 cut(s) 71, 125, 153, 258
SfaNI GCATC 1 cut(s) 312
SfcI CTRYAG 1 cut(s) 576
Sfr274I CTCGAG 1 cut(s) 175
SinI GGWCC 3 cut(s) 125, 153, 258
SlaI CTCGAG 1 cut(s) 175
SmiMI CAYNNNNRTG 1 cut(s) 161
SmlI CTYRAG 1 cut(s) 175
SmoI CTYRAG 1 cut(s) 175
Sse9I AATT 4 cut(s) 66, 312, 345, 503
SsiI CCGC 1 cut(s) 515
SspMI CTAG 1 cut(s) 641
TaaI ACNGT 1 cut(s) 136
TaqI TCGA 2 cut(s) 176, 591
TasI AATT 4 cut(s) 66, 312, 345, 503
TfiI GAWTC 3 cut(s) 4, 306, 631
Tru1I TTAA 2 cut(s) 170, 417
Tru9I TTAA 2 cut(s) 170, 417
TscAI CASTG 1 cut(s) 139
TseI GCWGC 3 cut(s) 454, 457, 575
TspDTI ATGAA 3 cut(s) 172, 267, 298
TspRI CASTG 1 cut(s) 139
Tth111I GACNNNGTC 2 cut(s) 157, 229
VpaK11BI GGWCC 3 cut(s) 125, 153, 258
XhoI CTCGAG 1 cut(s) 175
XspI CTAG 1 cut(s) 641
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.