FvH4_2g18660

B-cell receptor-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0012082
Physical Location & Seq
Forward (+)
15965099 .. 15967612
2514 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g18660.t2

Sequence Viewer

Length: 645 bp
ATGTATGAGTTGTTGATCCCAGTTGTGATTGCTGAGGCTGTTGTGGCATCTCTTATGTTGCTCAAAATTGGGCCATTGAGAGAGCTGGTGTTGAAGATTCTGGATCAGCTCAAAGTGGGCAGAGGACCAGTCACTCTGATTGGCATTGCTGGCACCATGGGTGTGATTCTCCTATCAAGATTCATTAGCATTGTCAAGATGCAGAACAAGGGGGAAAAGCTTGGTACTATGTCACCGATGGATCAGGTTCTGTACAGAACCCACATCCTTGAAGCTTCACTAATGTCTTTTGCTGTATTTCTTGGATTCATAATTGACCGAACACACGATTATCTAACGAAGCTTGATGGATTGACGAGTACAAAAGAAGAAGTTGAAAGGCTTCAGAAAGAAAAGGTGCAGCTTACAGAAAAGGAAGAAAAGTCTTCCAAGGAAATCAAGCAGCTGCAAGAAAAAATTGCAACTCTATCAGAGGATTTGAAGAAGCTGAAGTTGGAGTGTGCGGAGAAAGATAAAGCTGTTGAAACTGCTGAATCCCATGTCACTTCCCTCCAGAAACAAGCTGCAGATCTACTTCTCGAGTATGACCATTTGTTAGAAGACAACCAAAAACTTCAGACTCAGTTTGCAGGACATAGGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 ko05165 map04141 map05165
Pfam Domains
Protein Families
Bap31

Protein Analysis

215

Amino Acids

24.14

Weight (kDa)

6.54

Isoelectric Point (pI)

37.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012082)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07190 AT5G48660 AT5G48660
fragaria_vesca FvH4_2g18660 FvH4_2g18660
malus_domestica MD05G1172500.v1.1 MD10G1160700.v1.1
prunus_persica Prupe.8G199900_v2.0.a1
pyrus_communis pycom05g15910 pycom10g13890
rosa_chinensis RchiOBHm_Chr6g0284221
rosa_laevigata RLG00000012755
rosa_roxburghii Rroxscaffold_7G00184770
rosa_rugosa Rorug06G0162000
rosa_samantha Rh6AG274900 Rh6BG275400 Rh6CG277100 Rh6DG269800
rosa_wichuraiana Rw6G023650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 152
AciI CCGC 1 cut(s) 503
AclWI GGATC 3 cut(s) 10, 111, 249
AcuI CTGAAG 3 cut(s) 368, 509, 599
AfaI GTAC 3 cut(s) 226, 254, 361
AgsI TTSAA 5 cut(s) 94, 272, 377, 481, 524
AjuI GAANNNNNNNTTGG 2 cut(s) 476, 508
AlwI GGATC 3 cut(s) 10, 111, 249
AlwNI CAGNNNCTG 1 cut(s) 250
Ama87I CYCGRG 1 cut(s) 578
AoxI GGCC 1 cut(s) 71
ApeKI GCWGC 4 cut(s) 400, 442, 445, 563
Asp700I GAANNNNTTC 1 cut(s) 381
AspS9I GGNCC 2 cut(s) 71, 125
AsuHPI GGTGA 1 cut(s) 225
AvaI CYCGRG 1 cut(s) 578
AvaII GGWCC 1 cut(s) 125
BanI GGYRCC 1 cut(s) 152
BbsI GAAGAC 2 cut(s) 417, 606
BbvCI CCTCAGC 1 cut(s) 33
BbvI GCAGC 4 cut(s) 412, 432, 454, 550
BccI CCATC 2 cut(s) 232, 341
BfmI CTRYAG 1 cut(s) 564
BglII AGATCT 1 cut(s) 568
BisI GCNGC 4 cut(s) 401, 443, 446, 564
BlsI GCNGC 4 cut(s) 402, 444, 447, 565
Bme18I GGWCC 1 cut(s) 125
BmeT110I CYCGRG 1 cut(s) 578
BmgT120I GGNCC 2 cut(s) 71, 125
BmiI GGNNCC 1 cut(s) 154
BmrI ACTGGG 1 cut(s) 14
BmsI GCATC 2 cut(s) 56, 189
BmuI ACTGGG 1 cut(s) 14
BpiI GAAGAC 2 cut(s) 417, 606
BpmI CTGGAG 1 cut(s) 536
Bpu10I CCTNAGC 1 cut(s) 33
BsaJI CCNNGG 2 cut(s) 156, 429
Bse1I ACTGG 2 cut(s) 20, 128
Bse3DI GCAATG 1 cut(s) 144
BseDI CCNNGG 2 cut(s) 156, 429
BseGI GGATG 1 cut(s) 264
BseMI GCAATG 1 cut(s) 144
BseMII CTCAG 2 cut(s) 24, 635
BseNI ACTGG 2 cut(s) 20, 128
BseXI GCAGC 4 cut(s) 412, 432, 454, 550
BsgI GTGCAG 1 cut(s) 419
BshFI GGCC 1 cut(s) 73
BshNI GGYRCC 1 cut(s) 152
BsiHKCI CYCGRG 1 cut(s) 578
BsnI GGCC 1 cut(s) 73
BsoBI CYCGRG 1 cut(s) 578
Bsp1407I TGTACA 1 cut(s) 252
Bsp143I GATC 4 cut(s) 15, 103, 241, 568
Bsp19I CCATGG 1 cut(s) 156
BspACI CCGC 1 cut(s) 503
BspANI GGCC 1 cut(s) 73
BspCNI CTCAG 2 cut(s) 25, 634
BspLI GGNNCC 1 cut(s) 154
BspMAI CTGCAG 1 cut(s) 568
BspPI GGATC 3 cut(s) 10, 111, 249
BspT107I GGYRCC 1 cut(s) 152
BsrDI GCAATG 1 cut(s) 144
BsrGI TGTACA 1 cut(s) 252
BsrI ACTGG 2 cut(s) 20, 128
BssECI CCNNGG 2 cut(s) 156, 429
BssMI GATC 4 cut(s) 15, 103, 241, 568
BssT1I CCWWGG 2 cut(s) 156, 429
BstAUI TGTACA 1 cut(s) 252
BstC8I GCNNGC 1 cut(s) 151
BstDEI CTNAG 2 cut(s) 33, 621
BstDSI CCRYGG 1 cut(s) 156
BstF5I GGATG 1 cut(s) 264
BstKTI GATC 4 cut(s) 18, 106, 244, 571
BstMBI GATC 4 cut(s) 15, 103, 241, 568
BstMWI GCNNNNNNNGC 2 cut(s) 44, 150
BstSFI CTRYAG 1 cut(s) 564
BstV1I GCAGC 4 cut(s) 412, 432, 454, 550
BstV2I GAAGAC 2 cut(s) 417, 606
BstX2I RGATCY 1 cut(s) 568
BstYI RGATCY 1 cut(s) 568
BsuRI GGCC 1 cut(s) 73
BtgI CCRYGG 1 cut(s) 156
BtsCI GGATG 1 cut(s) 264
Cac8I GCNNGC 1 cut(s) 151
CaiI CAGNNNCTG 1 cut(s) 250
Cfr13I GGNCC 2 cut(s) 71, 125
Csp6I GTAC 3 cut(s) 225, 253, 360
CviAII CATG 2 cut(s) 157, 539
CviQI GTAC 3 cut(s) 225, 253, 360
DdeI CTNAG 2 cut(s) 33, 621
DpnI GATC 4 cut(s) 17, 105, 243, 570
DpnII GATC 4 cut(s) 15, 103, 241, 568
Eco130I CCWWGG 2 cut(s) 156, 429
Eco47I GGWCC 1 cut(s) 125
Eco57I CTGAAG 3 cut(s) 368, 509, 599
Eco88I CYCGRG 1 cut(s) 578
EcoT14I CCWWGG 2 cut(s) 156, 429
ErhI CCWWGG 2 cut(s) 156, 429
FaeI CATG 2 cut(s) 160, 542
FaiI YATR 8 cut(s) 6, 56, 158, 230, 311, 540, 585, 636
FatI CATG 2 cut(s) 156, 538
Fnu4HI GCNGC 4 cut(s) 401, 443, 446, 564
FokI GGATG 1 cut(s) 251
Fsp4HI GCNGC 4 cut(s) 401, 443, 446, 564
GluI GCNGC 4 cut(s) 401, 443, 446, 564
GsuI CTGGAG 1 cut(s) 536
HaeIII GGCC 1 cut(s) 73
Hin1II CATG 2 cut(s) 160, 542
HindIII AAGCTT 3 cut(s) 218, 273, 341
HinfI GANTC 6 cut(s) 97, 166, 180, 306, 533, 619
HphI GGTGA 1 cut(s) 225
Hpy188I TCNGA 4 cut(s) 138, 387, 472, 618
Hpy188III TCNNGA 5 cut(s) 101, 177, 196, 553, 578
HpyCH4V TGCA 6 cut(s) 202, 400, 448, 461, 566, 629
HpyF10VI GCNNNNNNNGC 2 cut(s) 44, 150
HpyF3I CTNAG 2 cut(s) 33, 621
Hsp92II CATG 2 cut(s) 160, 542
Kzo9I GATC 4 cut(s) 15, 103, 241, 568
LpnPI CCDG 8 cut(s) 33, 71, 86, 135, 141, 230, 566, 615
Lsp1109I GCAGC 4 cut(s) 412, 432, 454, 550
LweI GCATC 2 cut(s) 56, 189
MaeIII GTNAC 3 cut(s) 130, 231, 541
MalI GATC 4 cut(s) 17, 105, 243, 570
MboI GATC 4 cut(s) 15, 103, 241, 568
MboII GAAGA 6 cut(s) 106, 380, 417, 428, 493, 611
MflI RGATCY 1 cut(s) 568
MluCI AATT 3 cut(s) 66, 312, 456
MlyI GAGTC 1 cut(s) 613
MmeI TCCRAC 1 cut(s) 474
MnlI CCTC 4 cut(s) 28, 116, 466, 560
MroXI GAANNNNTTC 1 cut(s) 381
MslI CAYNNNNRTG 1 cut(s) 161
MspA1I CMGCKG 1 cut(s) 445
MwoI GCNNNNNNNGC 2 cut(s) 44, 150
NcoI CCATGG 1 cut(s) 156
NdeII GATC 4 cut(s) 15, 103, 241, 568
NlaIII CATG 2 cut(s) 160, 542
NlaIV GGNNCC 1 cut(s) 154
NmuCI GTSAC 3 cut(s) 130, 231, 541
PaeR7I CTCGAG 1 cut(s) 578
PdmI GAANNNNTTC 1 cut(s) 381
PfeI GAWTC 5 cut(s) 97, 166, 180, 306, 533
PkrI GCNGC 4 cut(s) 402, 444, 447, 565
PleI GAGTC 1 cut(s) 613
PpsI GAGTC 1 cut(s) 613
PspN4I GGNNCC 1 cut(s) 154
PspPI GGNCC 2 cut(s) 71, 125
PstI CTGCAG 1 cut(s) 568
PstNI CAGNNNCTG 1 cut(s) 250
PsuI RGATCY 1 cut(s) 568
PvuII CAGCTG 1 cut(s) 445
RsaI GTAC 3 cut(s) 226, 254, 361
RsaNI GTAC 3 cut(s) 225, 253, 360
RseI CAYNNNNRTG 1 cut(s) 161
SatI GCNGC 4 cut(s) 401, 443, 446, 564
Sau3AI GATC 4 cut(s) 15, 103, 241, 568
Sau96I GGNCC 2 cut(s) 71, 125
SchI GAGTC 1 cut(s) 613
SfaNI GCATC 2 cut(s) 56, 189
SfcI CTRYAG 1 cut(s) 564
Sfr274I CTCGAG 1 cut(s) 578
SinI GGWCC 1 cut(s) 125
SlaI CTCGAG 1 cut(s) 578
SmiMI CAYNNNNRTG 1 cut(s) 161
SmlI CTYRAG 1 cut(s) 578
SmoI CTYRAG 1 cut(s) 578
Sse9I AATT 3 cut(s) 66, 312, 456
SsiI CCGC 1 cut(s) 503
StyI CCWWGG 2 cut(s) 156, 429
TaqI TCGA 1 cut(s) 579
TaqII GACCGA 1 cut(s) 333
TasI AATT 3 cut(s) 66, 312, 456
TatI WGTACW 2 cut(s) 252, 359
TfiI GAWTC 5 cut(s) 97, 166, 180, 306, 533
TseFI GTSAC 3 cut(s) 130, 231, 541
TseI GCWGC 4 cut(s) 400, 442, 445, 563
Tsp45I GTSAC 3 cut(s) 130, 231, 541
TspDTI ATGAA 2 cut(s) 172, 298
VpaK11BI GGWCC 1 cut(s) 125
XhoI CTCGAG 1 cut(s) 578
XmnI GAANNNNTTC 1 cut(s) 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.