MD05G1172500.v1.1

B-cell receptor-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0012082
Physical Location & Seq
Forward (+)
30107264 .. 30110399
3136 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1172500.v1.1.491

Sequence Viewer

Length: 660 bp
ATGATTCAGCTGTTGTTCGTAGTGCTTTTCGCCGAGGGGGTTGTAGCATTCCTTCTGCTGGTGAAAATTGGGCCGTTGAGGGAGCTGGTAATAAAGAGCTTGGATCAGATAAAAATGGGTAAGGGTCCGGCCACCATAAAAACGATTGCCGGGACCATGTCTGTGATTTTAATCTCCGACTTCATCAGCATTGTGAAGATCCAGAACAAAGGTGTGAAGCTTGGGACGATGTCGCCGATGGATCAGGTTCTGTGGAGGACCCACCTGCTTGAAGCTTCATTGTTGGGTTTTACCCTATTTCTTGGATTCATAATTGATCGAATGCACCATTATCTCAGTAAGCTAATTGGATTGAGGAGTAGCGTGGGAGCTTCAAAAGAAGAACTTGATAGGCTTCAGAAAGAGAAGATACAGCTTAAAGAAAAGGAAGATAAATCGTCCCAAGAAATCAAGCAGCTGCAAGACAAAATCTCAACTCTAACAGAGGATTTGAAGAAGCTGAAATTGGAATGTGCAGAGAAGGATAAAAGCATCGAAACTGCTGAATCCCATGTTGCCTCCCTCCAAAAACAGGCTGCAGATCTACTTCTCGAATATGACCGCTTGTTAGAAGACAACCAAAATCTTCAGACTCAGTCTCTAGGTTATAGGAGCAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 ko05165 map04141 map05165
Pfam Domains
Protein Families
Bap31

Protein Analysis

220

Amino Acids

24.69

Weight (kDa)

8.82

Isoelectric Point (pI)

44.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF724 PF05266 102 - 201 8.2e-07 Protein of unknown function (DUF724)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012082)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07190 AT5G48660 AT5G48660
fragaria_vesca FvH4_2g18660 FvH4_2g18660
malus_domestica MD05G1172500.v1.1 MD10G1160700.v1.1
prunus_persica Prupe.8G199900_v2.0.a1
pyrus_communis pycom05g15910 pycom10g13890
rosa_chinensis RchiOBHm_Chr6g0284221
rosa_laevigata RLG00000012755
rosa_roxburghii Rroxscaffold_7G00184770
rosa_rugosa Rorug06G0162000
rosa_samantha Rh6AG274900 Rh6BG275400 Rh6CG277100 Rh6DG269800
rosa_wichuraiana Rw6G023650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 273
Acc36I ACCTGC 2 cut(s) 273, 645
AciI CCGC 1 cut(s) 601
AclWI GGATC 3 cut(s) 111, 193, 249
AcoI YGGCCR 1 cut(s) 129
AcuI CTGAAG 2 cut(s) 380, 611
AfiI CCNNNNNNNGG 2 cut(s) 58, 571
AgsI TTSAA 3 cut(s) 272, 375, 493
AjuI GAANNNNNNNTTGG 2 cut(s) 488, 520
Alw26I GTCTC 1 cut(s) 642
AlwI GGATC 3 cut(s) 111, 193, 249
AlwNI CAGNNNCTG 1 cut(s) 250
AoxI GGCC 2 cut(s) 71, 129
ApeKI GCWGC 3 cut(s) 454, 457, 575
AspS9I GGNCC 4 cut(s) 71, 125, 153, 258
AsuC2I CCSGG 1 cut(s) 151
AsuHPI GGTGA 1 cut(s) 73
AvaII GGWCC 3 cut(s) 125, 153, 258
BarI GAAGNNNNNNTAC 2 cut(s) 36, 68
BbsI GAAGAC 1 cut(s) 618
BbvI GCAGC 3 cut(s) 444, 466, 562
BccI CCATC 1 cut(s) 232
BceAI ACGGC 1 cut(s) 58
BcnI CCSGG 1 cut(s) 151
BcoDI GTCTC 1 cut(s) 642
BfaI CTAG 1 cut(s) 641
BfmI CTRYAG 1 cut(s) 576
BfuAI ACCTGC 2 cut(s) 273, 645
BglII AGATCT 1 cut(s) 580
BisI GCNGC 3 cut(s) 455, 458, 576
BlsI GCNGC 3 cut(s) 456, 459, 577
Bme1390I CCNGG 1 cut(s) 151
Bme18I GGWCC 3 cut(s) 125, 153, 258
BmgT120I GGNCC 4 cut(s) 71, 125, 153, 258
BmiI GGNNCC 3 cut(s) 126, 154, 260
BmrFI CCNGG 1 cut(s) 151
BmsI GCATC 1 cut(s) 540
BpiI GAAGAC 1 cut(s) 618
BpuMI CCSGG 1 cut(s) 151
BsaBI GATNNNNATC 1 cut(s) 170
BsaJI CCNNGG 1 cut(s) 33
Bsc4I CCNNNNNNNGG 2 cut(s) 58, 571
Bse8I GATNNNNATC 1 cut(s) 170
BseDI CCNNGG 1 cut(s) 33
BseJI GATNNNNATC 1 cut(s) 170
BseLI CCNNNNNNNGG 2 cut(s) 58, 571
BseMII CTCAG 2 cut(s) 349, 647
BseRI GAGGAG 1 cut(s) 370
BseXI GCAGC 3 cut(s) 444, 466, 562
BsgI GTGCAG 1 cut(s) 534
BshFI GGCC 2 cut(s) 73, 131
BsiSI CCGG 2 cut(s) 128, 150
BslFI GGGAC 3 cut(s) 166, 238, 424
BslI CCNNNNNNNGG 2 cut(s) 58, 571
BsmAI GTCTC 1 cut(s) 642
BsmFI GGGAC 3 cut(s) 166, 238, 424
BsmI GAATGC 2 cut(s) 47, 327
BsnI GGCC 2 cut(s) 73, 131
Bsp143I GATC 5 cut(s) 103, 198, 241, 316, 580
BspACI CCGC 1 cut(s) 601
BspANI GGCC 2 cut(s) 73, 131
BspCNI CTCAG 2 cut(s) 348, 646
BspLI GGNNCC 3 cut(s) 126, 154, 260
BspMAI CTGCAG 1 cut(s) 580
BspMI ACCTGC 2 cut(s) 273, 645
BspPI GGATC 3 cut(s) 111, 193, 249
BssECI CCNNGG 1 cut(s) 33
BssMI GATC 5 cut(s) 103, 198, 241, 316, 580
BstDEI CTNAG 2 cut(s) 335, 633
BstKTI GATC 5 cut(s) 106, 201, 244, 319, 583
BstMAI GTCTC 1 cut(s) 642
BstMBI GATC 5 cut(s) 103, 198, 241, 316, 580
BstSCI CCNGG 1 cut(s) 149
BstSFI CTRYAG 1 cut(s) 576
BstV1I GCAGC 3 cut(s) 444, 466, 562
BstV2I GAAGAC 1 cut(s) 618
BstX2I RGATCY 2 cut(s) 198, 580
BstYI RGATCY 2 cut(s) 198, 580
BsuRI GGCC 2 cut(s) 73, 131
BveI ACCTGC 2 cut(s) 273, 645
CaiI CAGNNNCTG 1 cut(s) 250
Cfr13I GGNCC 4 cut(s) 71, 125, 153, 258
CviAII CATG 2 cut(s) 157, 551
DdeI CTNAG 2 cut(s) 335, 633
DpnI GATC 5 cut(s) 105, 200, 243, 318, 582
DpnII GATC 5 cut(s) 103, 198, 241, 316, 580
EaeI YGGCCR 1 cut(s) 129
Eco47I GGWCC 3 cut(s) 125, 153, 258
Eco57I CTGAAG 2 cut(s) 380, 611
EcoO109I RGGNCCY 1 cut(s) 258
FaeI CATG 2 cut(s) 160, 554
FaiI YATR 6 cut(s) 137, 158, 311, 552, 597, 648
FalI AAGNNNNNCTT 2 cut(s) 369, 401
FaqI GGGAC 3 cut(s) 166, 238, 424
FatI CATG 2 cut(s) 156, 550
Fnu4HI GCNGC 3 cut(s) 455, 458, 576
Fsp4HI GCNGC 3 cut(s) 455, 458, 576
FspBI CTAG 1 cut(s) 641
GluI GCNGC 3 cut(s) 455, 458, 576
HaeIII GGCC 2 cut(s) 73, 131
HapII CCGG 2 cut(s) 128, 150
Hin1II CATG 2 cut(s) 160, 554
HindIII AAGCTT 2 cut(s) 218, 273
HinfI GANTC 4 cut(s) 4, 306, 545, 631
HpaII CCGG 2 cut(s) 128, 150
HphI GGTGA 1 cut(s) 73
Hpy188I TCNGA 4 cut(s) 108, 178, 399, 630
Hpy188III TCNNGA 2 cut(s) 202, 590
HpyAV CCTTC 2 cut(s) 62, 514
HpyCH4V TGCA 4 cut(s) 325, 460, 515, 578
HpyF3I CTNAG 2 cut(s) 335, 633
Hsp92II CATG 2 cut(s) 160, 554
Kzo9I GATC 5 cut(s) 103, 198, 241, 316, 580
LmnI GCTCC 3 cut(s) 82, 368, 651
LpnPI CCDG 9 cut(s) 44, 71, 141, 163, 215, 230, 278, 557, 640
Lsp1109I GCAGC 3 cut(s) 444, 466, 562
LweI GCATC 1 cut(s) 540
MaeI CTAG 1 cut(s) 641
MalI GATC 5 cut(s) 105, 200, 243, 318, 582
MboI GATC 5 cut(s) 103, 198, 241, 316, 580
MboII GAAGA 7 cut(s) 208, 392, 418, 440, 505, 617, 623
MflI RGATCY 2 cut(s) 198, 580
MluCI AATT 4 cut(s) 66, 312, 345, 503
MlyI GAGTC 1 cut(s) 625
MmeI TCCRAC 1 cut(s) 201
MnlI CCTC 7 cut(s) 28, 72, 249, 348, 478, 568, 572
MseI TTAA 2 cut(s) 170, 417
MslI CAYNNNNRTG 1 cut(s) 161
MspA1I CMGCKG 2 cut(s) 10, 457
MspI CCGG 2 cut(s) 128, 150
MspR9I CCNGG 1 cut(s) 151
Mva1269I GAATGC 2 cut(s) 47, 327
NciI CCSGG 1 cut(s) 151
NdeII GATC 5 cut(s) 103, 198, 241, 316, 580
NlaIII CATG 2 cut(s) 160, 554
NlaIV GGNNCC 3 cut(s) 126, 154, 260
NmeAIII GCCGAG 1 cut(s) 58
PaqCI CACCTGC 1 cut(s) 273
PcsI WCGNNNNNNNCGW 1 cut(s) 233
PctI GAATGC 2 cut(s) 47, 327
PfeI GAWTC 3 cut(s) 4, 306, 545
PflFI GACNNNGTC 3 cut(s) 157, 229, 634
PkrI GCNGC 3 cut(s) 456, 459, 577
PleI GAGTC 1 cut(s) 625
PpsI GAGTC 1 cut(s) 625
PpuMI RGGWCCY 1 cut(s) 258
Psp5II RGGWCCY 1 cut(s) 258
PspN4I GGNNCC 3 cut(s) 126, 154, 260
PspPI GGNCC 4 cut(s) 71, 125, 153, 258
PspPPI RGGWCCY 1 cut(s) 258
PstI CTGCAG 1 cut(s) 580
PstNI CAGNNNCTG 1 cut(s) 250
PsuI RGATCY 2 cut(s) 198, 580
PsyI GACNNNGTC 3 cut(s) 157, 229, 634
PvuII CAGCTG 2 cut(s) 10, 457
RseI CAYNNNNRTG 1 cut(s) 161
SaqAI TTAA 2 cut(s) 170, 417
SatI GCNGC 3 cut(s) 455, 458, 576
Sau3AI GATC 5 cut(s) 103, 198, 241, 316, 580
Sau96I GGNCC 4 cut(s) 71, 125, 153, 258
SchI GAGTC 1 cut(s) 625
ScrFI CCNGG 1 cut(s) 151
SfaNI GCATC 1 cut(s) 540
SfcI CTRYAG 1 cut(s) 576
SinI GGWCC 3 cut(s) 125, 153, 258
SmiMI CAYNNNNRTG 1 cut(s) 161
Sse9I AATT 4 cut(s) 66, 312, 345, 503
SsiI CCGC 1 cut(s) 601
SspMI CTAG 1 cut(s) 641
StyD4I CCNGG 1 cut(s) 149
TaqI TCGA 3 cut(s) 319, 534, 591
TasI AATT 4 cut(s) 66, 312, 345, 503
TfiI GAWTC 3 cut(s) 4, 306, 545
Tru1I TTAA 2 cut(s) 170, 417
Tru9I TTAA 2 cut(s) 170, 417
TseI GCWGC 3 cut(s) 454, 457, 575
TspDTI ATGAA 3 cut(s) 172, 267, 298
Tth111I GACNNNGTC 3 cut(s) 157, 229, 634
VpaK11BI GGWCC 3 cut(s) 125, 153, 258
XspI CTAG 1 cut(s) 641
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.