Rroxscaffold_7G00184770

B-cell receptor-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0012082
Physical Location & Seq
Reverse (-)
24077600 .. 24079880
2281 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00184770.1

Sequence Viewer

Length: 762 bp
ATGTATGAGTTGTTGATCCCTGTTGTGATTGCTGAGGCTGTTGTGGCATCTCTTATGTTGCTCAAGATTGGGCCTTTGAGAGAGCTTGTGTTGAAGATTCTGGATCAGCTCAAAGTGGGCAGAGGCCCAGTCACTCTGATTGGCATTGCTGGCACCATGGGTGTGATTCTCCTATCAAGATTCATTAGCATTGTCAAGATGCAGAACAAAGGTGAAAAGCTTGGGACTATGTCACCCATGGATCAGGTTCTGTACAGAACCCACATCCTTGAAGCGTCATTGATGTGCAATAGTATAGTTGTCAACAACCCACACTGCAATACCTATGCTTACAGCTATGCTTCCACCCTCTATGGTTTTGAACACTTACCAATAGCAGCAATGCTTATCATGCTTCGTATAGCTTTTGCTGTATTTCTTGGATTCATAATTGATCGAACACACGATTATCTTACAAAGCTTGATGGATTGACGAGTACAAAAGAAGAAGTTGATAGGCTTCAGAAAGAAAAGGTGCAGCTTACAGAAAAGGAAGAGAAATCTTCCAAGGAAATCAAGCAGCTGCAAGAAAAAATTGCAACTCTATCGGAGGATTTGAAGAAGCTGAAGTTGGAGTGCGCACAGAAAGATAAAGCTGTTGAAACTGCTGAATCCCATGTCACTTCCCTCCAGAAACAAGCTGCAGATCTACTTCTTGAGTATGACCATTTGTTAGAAGACAACCAAAAACTTCAAGCTCAGTTTGCAGGACATAGGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 ko05165 map04141 map05165
Pfam Domains
Protein Families
Bap31

Protein Analysis

253

Amino Acids

28.47

Weight (kDa)

7.06

Isoelectric Point (pI)

33.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012082)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07190 AT5G48660 AT5G48660
fragaria_vesca FvH4_2g18660 FvH4_2g18660
malus_domestica MD05G1172500.v1.1 MD10G1160700.v1.1
prunus_persica Prupe.8G199900_v2.0.a1
pyrus_communis pycom05g15910 pycom10g13890
rosa_chinensis RchiOBHm_Chr6g0284221
rosa_laevigata RLG00000012755
rosa_roxburghii Rroxscaffold_7G00184770
rosa_rugosa Rorug06G0162000
rosa_samantha Rh6AG274900 Rh6BG275400 Rh6CG277100 Rh6DG269800
rosa_wichuraiana Rw6G023650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 619
AccB1I GGYRCC 1 cut(s) 152
AclWI GGATC 3 cut(s) 10, 111, 249
AcuI CTGAAG 2 cut(s) 485, 626
AfaI GTAC 2 cut(s) 254, 478
AgsI TTSAA 6 cut(s) 94, 272, 362, 598, 641, 734
AjuI GAANNNNNNNTTGG 2 cut(s) 593, 625
AlwI GGATC 3 cut(s) 10, 111, 249
AlwNI CAGNNNCTG 1 cut(s) 250
AoxI GGCC 2 cut(s) 71, 124
ApeKI GCWGC 5 cut(s) 377, 517, 559, 562, 680
AspLEI GCGC 1 cut(s) 620
AspS9I GGNCC 2 cut(s) 71, 125
AsuHPI GGTGA 2 cut(s) 224, 225
BanI GGYRCC 1 cut(s) 152
BbsI GAAGAC 1 cut(s) 723
BbvCI CCTCAGC 1 cut(s) 33
BbvI GCAGC 5 cut(s) 389, 529, 549, 571, 667
BccI CCATC 1 cut(s) 458
BcgI CGANNNNNNTGC 2 cut(s) 567, 601
BfmI CTRYAG 1 cut(s) 681
BglII AGATCT 1 cut(s) 685
BisI GCNGC 5 cut(s) 378, 518, 560, 563, 681
BlsI GCNGC 5 cut(s) 379, 519, 561, 564, 682
BmgT120I GGNCC 2 cut(s) 71, 125
BmiI GGNNCC 1 cut(s) 154
BmrI ACTGGG 1 cut(s) 122
BmsI GCATC 2 cut(s) 56, 189
BmuI ACTGGG 1 cut(s) 122
BpiI GAAGAC 1 cut(s) 723
BpmI CTGGAG 1 cut(s) 653
Bpu10I CCTNAGC 1 cut(s) 33
BpuEI CTTGAG 2 cut(s) 47, 716
BsaJI CCNNGG 3 cut(s) 156, 237, 546
Bse1I ACTGG 1 cut(s) 128
Bse3DI GCAATG 2 cut(s) 144, 387
BseDI CCNNGG 3 cut(s) 156, 237, 546
BseGI GGATG 1 cut(s) 264
BseMI GCAATG 2 cut(s) 144, 387
BseMII CTCAG 2 cut(s) 24, 752
BseNI ACTGG 1 cut(s) 128
BseXI GCAGC 5 cut(s) 389, 529, 549, 571, 667
BsgI GTGCAG 1 cut(s) 536
BshFI GGCC 2 cut(s) 73, 126
BshNI GGYRCC 1 cut(s) 152
BslFI GGGAC 1 cut(s) 238
BsmFI GGGAC 1 cut(s) 238
BsnI GGCC 2 cut(s) 73, 126
Bsp1407I TGTACA 1 cut(s) 252
Bsp143I GATC 5 cut(s) 15, 103, 241, 433, 685
Bsp19I CCATGG 2 cut(s) 156, 237
BspANI GGCC 2 cut(s) 73, 126
BspCNI CTCAG 2 cut(s) 25, 751
BspLI GGNNCC 1 cut(s) 154
BspMAI CTGCAG 1 cut(s) 685
BspPI GGATC 3 cut(s) 10, 111, 249
BspT107I GGYRCC 1 cut(s) 152
BsrDI GCAATG 2 cut(s) 144, 387
BsrGI TGTACA 1 cut(s) 252
BsrI ACTGG 1 cut(s) 128
BssECI CCNNGG 3 cut(s) 156, 237, 546
BssMI GATC 5 cut(s) 15, 103, 241, 433, 685
BssT1I CCWWGG 3 cut(s) 156, 237, 546
Bst6I CTCTTC 1 cut(s) 528
BstAUI TGTACA 1 cut(s) 252
BstC8I GCNNGC 1 cut(s) 151
BstDEI CTNAG 2 cut(s) 33, 738
BstDSI CCRYGG 2 cut(s) 156, 237
BstF5I GGATG 1 cut(s) 264
BstHHI GCGC 1 cut(s) 620
BstKTI GATC 5 cut(s) 18, 106, 244, 436, 688
BstMBI GATC 5 cut(s) 15, 103, 241, 433, 685
BstMWI GCNNNNNNNGC 4 cut(s) 44, 150, 391, 743
BstSFI CTRYAG 1 cut(s) 681
BstV1I GCAGC 5 cut(s) 389, 529, 549, 571, 667
BstV2I GAAGAC 1 cut(s) 723
BstX2I RGATCY 1 cut(s) 685
BstYI RGATCY 1 cut(s) 685
BsuRI GGCC 2 cut(s) 73, 126
BtgI CCRYGG 2 cut(s) 156, 237
BtsCI GGATG 1 cut(s) 264
BtsI GCAGTG 1 cut(s) 313
BtsIMutI CAGTG 1 cut(s) 313
Cac8I GCNNGC 1 cut(s) 151
CaiI CAGNNNCTG 1 cut(s) 250
CfoI GCGC 1 cut(s) 620
Cfr13I GGNCC 2 cut(s) 71, 125
CseI GACGC 1 cut(s) 264
Csp6I GTAC 2 cut(s) 253, 477
CviAII CATG 4 cut(s) 157, 238, 391, 656
CviQI GTAC 2 cut(s) 253, 477
DdeI CTNAG 2 cut(s) 33, 738
DpnI GATC 5 cut(s) 17, 105, 243, 435, 687
DpnII GATC 5 cut(s) 15, 103, 241, 433, 685
Eam1104I CTCTTC 1 cut(s) 528
EarI CTCTTC 1 cut(s) 528
Eco130I CCWWGG 3 cut(s) 156, 237, 546
Eco57I CTGAAG 2 cut(s) 485, 626
EcoT14I CCWWGG 3 cut(s) 156, 237, 546
ErhI CCWWGG 3 cut(s) 156, 237, 546
FaeI CATG 4 cut(s) 160, 241, 394, 659
FaqI GGGAC 1 cut(s) 238
FatI CATG 4 cut(s) 156, 237, 390, 655
Fnu4HI GCNGC 5 cut(s) 378, 518, 560, 563, 681
FokI GGATG 1 cut(s) 251
Fsp4HI GCNGC 5 cut(s) 378, 518, 560, 563, 681
FspAI RTGCGCAY 1 cut(s) 619
FspI TGCGCA 1 cut(s) 619
GlaI GCGC 1 cut(s) 619
GluI GCNGC 5 cut(s) 378, 518, 560, 563, 681
GsuI CTGGAG 1 cut(s) 653
HaeIII GGCC 2 cut(s) 73, 126
HgaI GACGC 1 cut(s) 264
HhaI GCGC 1 cut(s) 620
Hin1II CATG 4 cut(s) 160, 241, 394, 659
Hin6I GCGC 1 cut(s) 618
HinP1I GCGC 1 cut(s) 618
HincII GTYRAC 1 cut(s) 304
HindII GTYRAC 1 cut(s) 304
HindIII AAGCTT 2 cut(s) 218, 458
HinfI GANTC 5 cut(s) 97, 166, 180, 423, 650
HphI GGTGA 2 cut(s) 224, 225
Hpy166II GTNNAC 1 cut(s) 304
Hpy188I TCNGA 3 cut(s) 138, 504, 589
Hpy188III TCNNGA 6 cut(s) 64, 101, 177, 196, 670, 695
Hpy8I GTNNAC 1 cut(s) 304
HpyCH4V TGCA 8 cut(s) 202, 288, 318, 517, 565, 578, 683, 746
HpyF10VI GCNNNNNNNGC 4 cut(s) 44, 150, 391, 743
HpyF3I CTNAG 2 cut(s) 33, 738
Hsp92II CATG 4 cut(s) 160, 241, 394, 659
HspAI GCGC 1 cut(s) 618
Kzo9I GATC 5 cut(s) 15, 103, 241, 433, 685
LpnPI CCDG 7 cut(s) 33, 86, 135, 141, 230, 683, 732
Lsp1109I GCAGC 5 cut(s) 389, 529, 549, 571, 667
LweI GCATC 2 cut(s) 56, 189
MaeIII GTNAC 3 cut(s) 130, 231, 658
MalI GATC 5 cut(s) 17, 105, 243, 435, 687
MboI GATC 5 cut(s) 15, 103, 241, 433, 685
MboII GAAGA 6 cut(s) 106, 497, 534, 545, 610, 728
MflI RGATCY 1 cut(s) 685
MluCI AATT 2 cut(s) 429, 573
MmeI TCCRAC 1 cut(s) 591
MnlI CCTC 5 cut(s) 28, 116, 359, 583, 677
MslI CAYNNNNRTG 2 cut(s) 161, 283
MspA1I CMGCKG 1 cut(s) 562
MwoI GCNNNNNNNGC 4 cut(s) 44, 150, 391, 743
NcoI CCATGG 2 cut(s) 156, 237
NdeII GATC 5 cut(s) 15, 103, 241, 433, 685
NlaIII CATG 4 cut(s) 160, 241, 394, 659
NlaIV GGNNCC 1 cut(s) 154
NmuCI GTSAC 3 cut(s) 130, 231, 658
NsbI TGCGCA 1 cut(s) 619
PfeI GAWTC 5 cut(s) 97, 166, 180, 423, 650
PflFI GACNNNGTC 1 cut(s) 229
PkrI GCNGC 5 cut(s) 379, 519, 561, 564, 682
PspN4I GGNNCC 1 cut(s) 154
PspPI GGNCC 2 cut(s) 71, 125
PstI CTGCAG 1 cut(s) 685
PstNI CAGNNNCTG 1 cut(s) 250
PsuI RGATCY 1 cut(s) 685
PsyI GACNNNGTC 1 cut(s) 229
PvuII CAGCTG 1 cut(s) 562
RsaI GTAC 2 cut(s) 254, 478
RsaNI GTAC 2 cut(s) 253, 477
RseI CAYNNNNRTG 2 cut(s) 161, 283
SatI GCNGC 5 cut(s) 378, 518, 560, 563, 681
Sau3AI GATC 5 cut(s) 15, 103, 241, 433, 685
Sau96I GGNCC 2 cut(s) 71, 125
SfaNI GCATC 2 cut(s) 56, 189
SfcI CTRYAG 1 cut(s) 681
SmiMI CAYNNNNRTG 2 cut(s) 161, 283
SmlI CTYRAG 2 cut(s) 62, 695
SmoI CTYRAG 2 cut(s) 62, 695
Sse9I AATT 2 cut(s) 429, 573
StyI CCWWGG 3 cut(s) 156, 237, 546
TaqI TCGA 1 cut(s) 436
TasI AATT 2 cut(s) 429, 573
TatI WGTACW 2 cut(s) 252, 476
TfiI GAWTC 5 cut(s) 97, 166, 180, 423, 650
TscAI CASTG 1 cut(s) 320
TseFI GTSAC 3 cut(s) 130, 231, 658
TseI GCWGC 5 cut(s) 377, 517, 559, 562, 680
Tsp45I GTSAC 3 cut(s) 130, 231, 658
TspDTI ATGAA 2 cut(s) 172, 415
TspRI CASTG 1 cut(s) 320
Tth111I GACNNNGTC 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.