Rh6AG274900

B-cell receptor-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0012082
Physical Location & Seq
Forward (+)
46922354 .. 46927139
4786 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG274900.1

Sequence Viewer

Length: 645 bp
ATGTATGAGTTGTTGATCCCTGTTGTGATTGCTGAGGCTGTTGTCGCATCTCTTATGTTGCTCAAGATTGGGCCTTTGAGAGAGCTTGTGTTGAAGATTCTGGATCAGCTCAAAGTGGGCAGAGGCCCAGTCACTCTGATTGGCATTGCTGGCACCATGGGTGTGATTCTCCTATCAAGATTCATTAGCATAGTCAAGATGCAGAACAAAGGTGAAAAGCTTGGGACTATGTCACCCATGGATCAGGTTCTTTACAGAACCCACATCCTTGAAGCTTCATTAATGTCTTTTGCTGTATTTCTTGGATTCATAATTGATCGAACACATGATTATCTTACAAAGCTTGATGGATTGACGAGTACAAAAGAAGAAGTTGACAGGCTTCAGAAAGAAAAGGTGCAGCTTACAGAAAAGGAAGAGAAATCTTCCAAGGAAATCAAGCAGCTGCAAGAAAAAATTGCTACTCTATCAGAGGATTTGAATAAGCTGAAGTTGGAGTGCGCGCAGAAAGATAAAGCTGTTGAAACTGCTGAATCCCATGTCACTTCCCTCCAGAAACAAGCTGCAGATCTACTTCTTGAGTATGACCATTTGTTAGAAGACAACCAAAAACTTCAAGCTCAGTTTGCAGGACAAAGGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 ko05165 map04141 map05165
Pfam Domains
Protein Families
Bap31

Protein Analysis

214

Amino Acids

24.07

Weight (kDa)

6.46

Isoelectric Point (pI)

38.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012082)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07190 AT5G48660 AT5G48660
fragaria_vesca FvH4_2g18660 FvH4_2g18660
malus_domestica MD05G1172500.v1.1 MD10G1160700.v1.1
prunus_persica Prupe.8G199900_v2.0.a1
pyrus_communis pycom05g15910 pycom10g13890
rosa_chinensis RchiOBHm_Chr6g0284221
rosa_laevigata RLG00000012755
rosa_roxburghii Rroxscaffold_7G00184770
rosa_rugosa Rorug06G0162000
rosa_samantha Rh6AG274900 Rh6BG275400 Rh6CG277100 Rh6DG269800
rosa_wichuraiana Rw6G023650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 152
AccII CGCG 1 cut(s) 503
AclWI GGATC 3 cut(s) 10, 111, 249
AcuI CTGAAG 2 cut(s) 368, 509
AfaI GTAC 1 cut(s) 361
AgsI TTSAA 5 cut(s) 94, 272, 481, 524, 617
AlwI GGATC 3 cut(s) 10, 111, 249
AoxI GGCC 2 cut(s) 71, 124
ApeKI GCWGC 4 cut(s) 400, 442, 445, 563
AseI ATTAAT 1 cut(s) 281
AspLEI GCGC 2 cut(s) 503, 505
AspS9I GGNCC 2 cut(s) 71, 125
AsuHPI GGTGA 2 cut(s) 224, 225
BanI GGYRCC 1 cut(s) 152
BbsI GAAGAC 1 cut(s) 606
BbvCI CCTCAGC 1 cut(s) 33
BbvI GCAGC 4 cut(s) 412, 432, 454, 550
BccI CCATC 1 cut(s) 341
BfmI CTRYAG 1 cut(s) 564
BglII AGATCT 1 cut(s) 568
BisI GCNGC 4 cut(s) 401, 443, 446, 564
BlsI GCNGC 4 cut(s) 402, 444, 447, 565
BmgT120I GGNCC 2 cut(s) 71, 125
BmiI GGNNCC 1 cut(s) 154
BmrI ACTGGG 1 cut(s) 122
BmsI GCATC 2 cut(s) 56, 189
BmuI ACTGGG 1 cut(s) 122
BpiI GAAGAC 1 cut(s) 606
BpmI CTGGAG 1 cut(s) 536
Bpu10I CCTNAGC 1 cut(s) 33
BpuEI CTTGAG 2 cut(s) 47, 599
BsaJI CCNNGG 3 cut(s) 156, 237, 429
Bse1I ACTGG 1 cut(s) 128
Bse3DI GCAATG 1 cut(s) 144
BseDI CCNNGG 3 cut(s) 156, 237, 429
BseGI GGATG 1 cut(s) 264
BseMI GCAATG 1 cut(s) 144
BseMII CTCAG 2 cut(s) 24, 635
BseNI ACTGG 1 cut(s) 128
BsePI GCGCGC 1 cut(s) 501
BseXI GCAGC 4 cut(s) 412, 432, 454, 550
BsgI GTGCAG 1 cut(s) 419
Bsh1236I CGCG 1 cut(s) 503
BshFI GGCC 2 cut(s) 73, 126
BshNI GGYRCC 1 cut(s) 152
BslFI GGGAC 1 cut(s) 238
BsmFI GGGAC 1 cut(s) 238
BsnI GGCC 2 cut(s) 73, 126
Bsp143I GATC 5 cut(s) 15, 103, 241, 316, 568
Bsp19I CCATGG 2 cut(s) 156, 237
BspANI GGCC 2 cut(s) 73, 126
BspCNI CTCAG 2 cut(s) 25, 634
BspFNI CGCG 1 cut(s) 503
BspLI GGNNCC 1 cut(s) 154
BspMAI CTGCAG 1 cut(s) 568
BspPI GGATC 3 cut(s) 10, 111, 249
BspT107I GGYRCC 1 cut(s) 152
BsrDI GCAATG 1 cut(s) 144
BsrI ACTGG 1 cut(s) 128
BssECI CCNNGG 3 cut(s) 156, 237, 429
BssHII GCGCGC 1 cut(s) 501
BssMI GATC 5 cut(s) 15, 103, 241, 316, 568
BssT1I CCWWGG 3 cut(s) 156, 237, 429
Bst6I CTCTTC 1 cut(s) 411
BstC8I GCNNGC 2 cut(s) 151, 503
BstDEI CTNAG 2 cut(s) 33, 621
BstDSI CCRYGG 2 cut(s) 156, 237
BstF5I GGATG 1 cut(s) 264
BstFNI CGCG 1 cut(s) 503
BstHHI GCGC 2 cut(s) 503, 505
BstKTI GATC 5 cut(s) 18, 106, 244, 319, 571
BstMBI GATC 5 cut(s) 15, 103, 241, 316, 568
BstMWI GCNNNNNNNGC 3 cut(s) 44, 150, 626
BstSFI CTRYAG 1 cut(s) 564
BstUI CGCG 1 cut(s) 503
BstV1I GCAGC 4 cut(s) 412, 432, 454, 550
BstV2I GAAGAC 1 cut(s) 606
BstX2I RGATCY 1 cut(s) 568
BstYI RGATCY 1 cut(s) 568
BsuRI GGCC 2 cut(s) 73, 126
BtgI CCRYGG 2 cut(s) 156, 237
BtsCI GGATG 1 cut(s) 264
Cac8I GCNNGC 2 cut(s) 151, 503
CfoI GCGC 2 cut(s) 503, 505
Cfr13I GGNCC 2 cut(s) 71, 125
Csp6I GTAC 1 cut(s) 360
CviAII CATG 4 cut(s) 157, 238, 326, 539
CviQI GTAC 1 cut(s) 360
DdeI CTNAG 2 cut(s) 33, 621
DpnI GATC 5 cut(s) 17, 105, 243, 318, 570
DpnII GATC 5 cut(s) 15, 103, 241, 316, 568
Eam1104I CTCTTC 1 cut(s) 411
EarI CTCTTC 1 cut(s) 411
Eco130I CCWWGG 3 cut(s) 156, 237, 429
Eco57I CTGAAG 2 cut(s) 368, 509
EcoT14I CCWWGG 3 cut(s) 156, 237, 429
ErhI CCWWGG 3 cut(s) 156, 237, 429
FaeI CATG 4 cut(s) 160, 241, 329, 542
FaqI GGGAC 1 cut(s) 238
FatI CATG 4 cut(s) 156, 237, 325, 538
Fnu4HI GCNGC 4 cut(s) 401, 443, 446, 564
FokI GGATG 1 cut(s) 251
Fsp4HI GCNGC 4 cut(s) 401, 443, 446, 564
GlaI GCGC 2 cut(s) 502, 504
GluI GCNGC 4 cut(s) 401, 443, 446, 564
GsuI CTGGAG 1 cut(s) 536
HaeIII GGCC 2 cut(s) 73, 126
HhaI GCGC 2 cut(s) 503, 505
Hin1II CATG 4 cut(s) 160, 241, 329, 542
Hin6I GCGC 2 cut(s) 501, 503
HinP1I GCGC 2 cut(s) 501, 503
HincII GTYRAC 1 cut(s) 376
HindII GTYRAC 1 cut(s) 376
HindIII AAGCTT 3 cut(s) 218, 273, 341
HinfI GANTC 5 cut(s) 97, 166, 180, 306, 533
HphI GGTGA 2 cut(s) 224, 225
Hpy166II GTNNAC 1 cut(s) 376
Hpy188I TCNGA 3 cut(s) 138, 387, 472
Hpy188III TCNNGA 6 cut(s) 64, 101, 177, 196, 553, 578
Hpy8I GTNNAC 1 cut(s) 376
HpyCH4V TGCA 5 cut(s) 202, 400, 448, 566, 629
HpyF10VI GCNNNNNNNGC 3 cut(s) 44, 150, 626
HpyF3I CTNAG 2 cut(s) 33, 621
Hsp92II CATG 4 cut(s) 160, 241, 329, 542
HspAI GCGC 2 cut(s) 501, 503
Kzo9I GATC 5 cut(s) 15, 103, 241, 316, 568
LpnPI CCDG 8 cut(s) 33, 86, 135, 141, 230, 364, 566, 615
Lsp1109I GCAGC 4 cut(s) 412, 432, 454, 550
LweI GCATC 2 cut(s) 56, 189
MaeIII GTNAC 3 cut(s) 130, 231, 541
MalI GATC 5 cut(s) 17, 105, 243, 318, 570
MboI GATC 5 cut(s) 15, 103, 241, 316, 568
MboII GAAGA 5 cut(s) 106, 380, 417, 428, 611
MflI RGATCY 1 cut(s) 568
MluCI AATT 2 cut(s) 312, 456
MmeI TCCRAC 1 cut(s) 474
MnlI CCTC 4 cut(s) 28, 116, 466, 560
MseI TTAA 1 cut(s) 281
MslI CAYNNNNRTG 1 cut(s) 161
MspA1I CMGCKG 1 cut(s) 445
MvnI CGCG 1 cut(s) 503
MwoI GCNNNNNNNGC 3 cut(s) 44, 150, 626
NcoI CCATGG 2 cut(s) 156, 237
NdeII GATC 5 cut(s) 15, 103, 241, 316, 568
NlaIII CATG 4 cut(s) 160, 241, 329, 542
NlaIV GGNNCC 1 cut(s) 154
NmuCI GTSAC 3 cut(s) 130, 231, 541
PauI GCGCGC 1 cut(s) 501
PfeI GAWTC 5 cut(s) 97, 166, 180, 306, 533
PflFI GACNNNGTC 1 cut(s) 229
PkrI GCNGC 4 cut(s) 402, 444, 447, 565
PshBI ATTAAT 1 cut(s) 281
PspN4I GGNNCC 1 cut(s) 154
PspPI GGNCC 2 cut(s) 71, 125
PstI CTGCAG 1 cut(s) 568
PsuI RGATCY 1 cut(s) 568
PsyI GACNNNGTC 1 cut(s) 229
PteI GCGCGC 1 cut(s) 501
PvuII CAGCTG 1 cut(s) 445
RsaI GTAC 1 cut(s) 361
RsaNI GTAC 1 cut(s) 360
RseI CAYNNNNRTG 1 cut(s) 161
SaqAI TTAA 1 cut(s) 281
SatI GCNGC 4 cut(s) 401, 443, 446, 564
Sau3AI GATC 5 cut(s) 15, 103, 241, 316, 568
Sau96I GGNCC 2 cut(s) 71, 125
SfaNI GCATC 2 cut(s) 56, 189
SfcI CTRYAG 1 cut(s) 564
SmiMI CAYNNNNRTG 1 cut(s) 161
SmlI CTYRAG 2 cut(s) 62, 578
SmoI CTYRAG 2 cut(s) 62, 578
Sse9I AATT 2 cut(s) 312, 456
StyI CCWWGG 3 cut(s) 156, 237, 429
TaqI TCGA 1 cut(s) 319
TasI AATT 2 cut(s) 312, 456
TatI WGTACW 1 cut(s) 359
TfiI GAWTC 5 cut(s) 97, 166, 180, 306, 533
Tru1I TTAA 1 cut(s) 281
Tru9I TTAA 1 cut(s) 281
TseFI GTSAC 3 cut(s) 130, 231, 541
TseI GCWGC 4 cut(s) 400, 442, 445, 563
Tsp45I GTSAC 3 cut(s) 130, 231, 541
TspDTI ATGAA 3 cut(s) 172, 267, 298
Tth111I GACNNNGTC 1 cut(s) 229
VspI ATTAAT 1 cut(s) 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.