AT3G07480

Adrenodoxin-like protein, mitochondrial

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0013130
Physical Location & Seq
Forward (+)
2388703 .. 2389823
1121 bp
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UTR
Exon/CDS
Intron
AT3G07480.1

Sequence Viewer

Length: 480 bp
ATGGCGACGACTCTTCAGAAACTCTCCTCTCAAATCCACCGACTCTCTCCATTCACCAGATCTCTAATCGTTCGCACATCCGCAACGTCTGCTCCTTCTCCGTCTCTGGGATCGAAGAAAGTCTCTGACCGAATCGTCAAGCTTTCTGCGATCGATCCCGATGGATACAAGCAGGACATCATTGGACTCTCTGGCCAGACTCTCCTTCGTGCGCTCACTCACACTGGTCTGATAGATCCAGCATCGCATAGATTGGATGACATCGAGGCTTGCTCAGCGGAGTGCGAGGTTCAGATCGCAGAGGAATGGCTCGAGAAGCTCCCGCCGCGTACTTACGATGAGGAGTATGTGCTGAAGCGTAGCTCTAGATCCCGTATCTTGAACAAGCACTCGCGTCTTGGTTGCCAAGTTGTGTTAACGCAGGAGCTTCAAGGTATGGTCGTCGCTGTCCCTGAAGCTAAGCCTTGGGATATTCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

159

Amino Acids

17.6

Weight (kDa)

7.75

Isoelectric Point (pI)

61.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013130)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07480
fragaria_vesca FvH4_2g17650
malus_domestica MD10G1150500.v1.1
prunus_persica Prupe.8G188900_v2.0.a1 Prupe.8G188900_v2.0.a1
pyrus_communis pycom05g14940
rosa_chinensis RchiOBHm_Chr6g0282621
rosa_laevigata RLG00000012881
rosa_multiflora Rmu_co8059372.1_g000001 Rmu_sc0000283.1_g000001 Rmu_sc0005697.1_g000001
rosa_roxburghii Rroxscaffold_7G00186220
rosa_rugosa Rorug06G0148000
rosa_samantha Rh6AG261200 Rh6BG264400 Rh6CG263500 Rh6DG255500
rosa_wichuraiana Rw6G022590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 134
AccII CGCG 2 cut(s) 328, 394
AciI CCGC 4 cut(s) 81, 278, 323, 326
AclWI GGATC 4 cut(s) 118, 149, 230, 363
AcoI YGGCCR 1 cut(s) 193
AcuI CTGAAG 2 cut(s) 374, 474
AfaI GTAC 1 cut(s) 331
AfiI CCNNNNNNNGG 1 cut(s) 107
AgsI TTSAA 2 cut(s) 382, 431
AluBI AGCT 5 cut(s) 142, 319, 363, 427, 458
AluI AGCT 5 cut(s) 142, 319, 363, 427, 458
Alw26I GTCTC 2 cut(s) 108, 127
AlwI GGATC 4 cut(s) 118, 149, 230, 363
Ama87I CYCGRG 1 cut(s) 311
AoxI GGCC 1 cut(s) 193
AspLEI GCGC 1 cut(s) 214
AsuHPI GGTGA 1 cut(s) 46
AvaI CYCGRG 1 cut(s) 311
BalI TGGCCA 1 cut(s) 195
BccI CCATC 1 cut(s) 155
BciVI GTATCC 1 cut(s) 158
BcoDI GTCTC 2 cut(s) 108, 127
BfaI CTAG 1 cut(s) 366
BfuI GTATCC 1 cut(s) 158
BglII AGATCT 1 cut(s) 59
BisI GCNGC 1 cut(s) 326
BlpI GCTNAGC 2 cut(s) 274, 459
BlsI GCNGC 1 cut(s) 327
BmeT110I CYCGRG 1 cut(s) 311
BmsI GCATC 1 cut(s) 251
BplI GAGNNNNNCTC 2 cut(s) 257, 289
Bpu1102I GCTNAGC 2 cut(s) 274, 459
Bsa29I ATCGAT 1 cut(s) 153
BsaJI CCNNGG 1 cut(s) 464
BsaXI ACNNNNNCTCC 2 cut(s) 76, 106
Bsc4I CCNNNNNNNGG 1 cut(s) 107
Bse1I ACTGG 1 cut(s) 229
BseCI ATCGAT 1 cut(s) 153
BseDI CCNNGG 1 cut(s) 464
BseGI GGATG 2 cut(s) 77, 262
BseLI CCNNNNNNNGG 1 cut(s) 107
BseMII CTCAG 1 cut(s) 288
BseNI ACTGG 1 cut(s) 229
BseRI GAGGAG 2 cut(s) 16, 356
Bsh1236I CGCG 2 cut(s) 328, 394
Bsh1285I CGRYCG 1 cut(s) 153
BshFI GGCC 1 cut(s) 195
BshVI ATCGAT 1 cut(s) 153
BsiEI CGRYCG 1 cut(s) 153
BsiHKCI CYCGRG 1 cut(s) 311
BslFI GGGAC 1 cut(s) 434
BslI CCNNNNNNNGG 1 cut(s) 107
BsmAI GTCTC 2 cut(s) 108, 127
BsmBI CGTCTC 1 cut(s) 108
BsmFI GGGAC 1 cut(s) 434
BsnI GGCC 1 cut(s) 195
BsoBI CYCGRG 1 cut(s) 311
Bsp143I GATC 7 cut(s) 59, 110, 150, 154, 235, 294, 368
Bsp1720I GCTNAGC 2 cut(s) 274, 459
BspACI CCGC 4 cut(s) 81, 278, 323, 326
BspANI GGCC 1 cut(s) 195
BspCNI CTCAG 1 cut(s) 287
BspDI ATCGAT 1 cut(s) 153
BspFNI CGCG 2 cut(s) 328, 394
BspPI GGATC 4 cut(s) 118, 149, 230, 363
BsrI ACTGG 1 cut(s) 229
BssECI CCNNGG 1 cut(s) 464
BssMI GATC 7 cut(s) 59, 110, 150, 154, 235, 294, 368
BssT1I CCWWGG 1 cut(s) 464
Bst6I CTCTTC 1 cut(s) 18
BstAPI GCANNNNNTGC 1 cut(s) 89
BstC8I GCNNGC 1 cut(s) 271
BstDEI CTNAG 2 cut(s) 274, 459
BstF5I GGATG 2 cut(s) 77, 262
BstFNI CGCG 2 cut(s) 328, 394
BstHHI GCGC 1 cut(s) 214
BstKTI GATC 7 cut(s) 62, 113, 153, 157, 238, 297, 371
BstMAI GTCTC 2 cut(s) 108, 127
BstMBI GATC 7 cut(s) 59, 110, 150, 154, 235, 294, 368
BstMCI CGRYCG 1 cut(s) 153
BstMWI GCNNNNNNNGC 4 cut(s) 89, 275, 316, 325
BstUI CGCG 2 cut(s) 328, 394
BstX2I RGATCY 3 cut(s) 59, 235, 368
BstYI RGATCY 3 cut(s) 59, 235, 368
Bsu15I ATCGAT 1 cut(s) 153
BsuI GTATCC 1 cut(s) 158
BsuRI GGCC 1 cut(s) 195
BsuTUI ATCGAT 1 cut(s) 153
BtgZI GCGATG 1 cut(s) 228
BtsCI GGATG 2 cut(s) 77, 262
BtsIMutI CAGTG 1 cut(s) 222
Cac8I GCNNGC 1 cut(s) 271
CfoI GCGC 1 cut(s) 214
ClaI ATCGAT 1 cut(s) 153
CseI GACGC 1 cut(s) 383
Csp6I GTAC 1 cut(s) 330
CviJI RGCY 9 cut(s) 142, 195, 269, 310, 319, 363, 427, 458, 463
CviKI_1 RGCY 9 cut(s) 142, 195, 269, 310, 319, 363, 427, 458, 463
CviQI GTAC 1 cut(s) 330
DdeI CTNAG 2 cut(s) 274, 459
DpnI GATC 7 cut(s) 61, 112, 152, 156, 237, 296, 370
DpnII GATC 7 cut(s) 59, 110, 150, 154, 235, 294, 368
DrdI GACNNNNNNGTC 1 cut(s) 134
DseDI GACNNNNNNGTC 1 cut(s) 134
EaeI YGGCCR 1 cut(s) 193
Eam1104I CTCTTC 1 cut(s) 18
EarI CTCTTC 1 cut(s) 18
Eco130I CCWWGG 1 cut(s) 464
Eco57I CTGAAG 2 cut(s) 374, 474
Eco88I CYCGRG 1 cut(s) 311
EcoT14I CCWWGG 1 cut(s) 464
ErhI CCWWGG 1 cut(s) 464
Esp3I CGTCTC 1 cut(s) 108
FaiI YATR 3 cut(s) 249, 348, 437
FaqI GGGAC 1 cut(s) 434
FauI CCCGC 1 cut(s) 330
Fnu4HI GCNGC 1 cut(s) 326
FokI GGATG 2 cut(s) 64, 269
Fsp4HI GCNGC 1 cut(s) 326
FspBI CTAG 1 cut(s) 366
GlaI GCGC 1 cut(s) 213
GluI GCNGC 1 cut(s) 326
HaeIII GGCC 1 cut(s) 195
HgaI GACGC 1 cut(s) 383
HhaI GCGC 1 cut(s) 214
Hin6I GCGC 1 cut(s) 212
HinP1I GCGC 1 cut(s) 212
HincII GTYRAC 1 cut(s) 417
HindII GTYRAC 1 cut(s) 417
HindIII AAGCTT 1 cut(s) 140
HinfI GANTC 5 cut(s) 10, 42, 132, 186, 199
HpaI GTTAAC 1 cut(s) 417
HphI GGTGA 1 cut(s) 46
Hpy166II GTNNAC 1 cut(s) 417
Hpy188I TCNGA 4 cut(s) 18, 127, 231, 294
Hpy188III TCNNGA 4 cut(s) 158, 313, 366, 379
Hpy8I GTNNAC 1 cut(s) 417
Hpy99I CGWCG 2 cut(s) 10, 446
HpyAV CCTTC 2 cut(s) 105, 215
HpyCH4IV ACGT 1 cut(s) 86
HpyF10VI GCNNNNNNNGC 4 cut(s) 89, 275, 316, 325
HpyF3I CTNAG 2 cut(s) 274, 459
HpySE526I ACGT 1 cut(s) 86
HspAI GCGC 1 cut(s) 212
KspAI GTTAAC 1 cut(s) 417
Kzo9I GATC 7 cut(s) 59, 110, 150, 154, 235, 294, 368
LmnI GCTCC 3 cut(s) 97, 324, 424
LpnPI CCDG 9 cut(s) 70, 92, 158, 177, 209, 210, 252, 407, 465
LweI GCATC 1 cut(s) 251
MaeI CTAG 1 cut(s) 366
MaeII ACGT 1 cut(s) 86
MalI GATC 7 cut(s) 61, 112, 152, 156, 237, 296, 370
MboI GATC 7 cut(s) 59, 110, 150, 154, 235, 294, 368
MboII GAAGA 2 cut(s) 5, 127
MflI RGATCY 3 cut(s) 59, 235, 368
MlsI TGGCCA 1 cut(s) 195
MluNI TGGCCA 1 cut(s) 195
MlyI GAGTC 4 cut(s) 4, 36, 180, 193
MnlI CCTC 5 cut(s) 37, 259, 280, 295, 334
Mox20I TGGCCA 1 cut(s) 195
MscI TGGCCA 1 cut(s) 195
MseI TTAA 1 cut(s) 416
Msp20I TGGCCA 1 cut(s) 195
MspA1I CMGCKG 1 cut(s) 278
MvnI CGCG 2 cut(s) 328, 394
MwoI GCNNNNNNNGC 4 cut(s) 89, 275, 316, 325
NdeII GATC 7 cut(s) 59, 110, 150, 154, 235, 294, 368
PaeR7I CTCGAG 1 cut(s) 311
PfeI GAWTC 1 cut(s) 132
PkrI GCNGC 1 cut(s) 327
Ple19I CGATCG 1 cut(s) 153
PleI GAGTC 4 cut(s) 4, 36, 180, 193
PpsI GAGTC 4 cut(s) 4, 36, 180, 193
PsuI RGATCY 3 cut(s) 59, 235, 368
PvuI CGATCG 1 cut(s) 153
RsaI GTAC 1 cut(s) 331
RsaNI GTAC 1 cut(s) 330
SaqAI TTAA 1 cut(s) 416
SatI GCNGC 1 cut(s) 326
Sau3AI GATC 7 cut(s) 59, 110, 150, 154, 235, 294, 368
SchI GAGTC 4 cut(s) 4, 36, 180, 193
SetI ASST 8 cut(s) 89, 144, 291, 321, 365, 429, 436, 460
SfaNI GCATC 1 cut(s) 251
Sfr274I CTCGAG 1 cut(s) 311
SlaI CTCGAG 1 cut(s) 311
SmlI CTYRAG 1 cut(s) 311
SmoI CTYRAG 1 cut(s) 311
SsiI CCGC 4 cut(s) 81, 278, 323, 326
SspMI CTAG 1 cut(s) 366
StyI CCWWGG 1 cut(s) 464
TaiI ACGT 1 cut(s) 89
TaqI TCGA 4 cut(s) 113, 153, 264, 312
TaqII GACCGA 1 cut(s) 144
TauI GCSGC 1 cut(s) 328
TfiI GAWTC 1 cut(s) 132
Tru1I TTAA 1 cut(s) 416
Tru9I TTAA 1 cut(s) 416
TscAI CASTG 1 cut(s) 229
TspGWI ACGGA 2 cut(s) 90, 465
TspRI CASTG 1 cut(s) 229
XbaI TCTAGA 1 cut(s) 365
XhoI CTCGAG 1 cut(s) 311
XspI CTAG 1 cut(s) 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.