FvH4_2g17650

Adrenodoxin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0013130
Physical Location & Seq
Reverse (-)
15167721 .. 15168197
477 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g17650.t1

Sequence Viewer

Length: 477 bp
ATGGCGATGACCTCCCTCCGCTCCCAAATCCACCGCCTCCCATCCCTCTCCAAGTCCCTAATCTCCAGATCCTCCGCCACCGCCGCCGCCTCCACCACCACCTCCCCCTCCAAGAAAGTCTCCGACCGCCTCGTGAAGCTCTTCGCGATCGACGTCGATGGCCGGAAGCGCGAGATAGTCGGACTCGCCGGCCACACCCTCCTCAAAGCCCTCGCCAACAACGGCCTGATCGACCCCGCCTCCCACCGCCTGGAGGACATCGAGGCCTGCTCGTCGGAGTGCGAGGTCAACATCGCTCAGGAGTGGTTCGATAAGCTGCCGCCGCGGACCTACGACGAGGAGTACTTGCTGAAGAAGTACGCTAGGGCTAGGGTTCTCAACAAGCACTCCAGGCTCGGATGCCAGATCGTCCTCACCGATGAGCTCCAAGGTATGGTCGTCGCGATCCCCGAGGCCAAGCCGTGGGACATTCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

159

Amino Acids

17.48

Weight (kDa)

8.81

Isoelectric Point (pI)

52.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013130)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07480
fragaria_vesca FvH4_2g17650
malus_domestica MD10G1150500.v1.1
prunus_persica Prupe.8G188900_v2.0.a1 Prupe.8G188900_v2.0.a1
pyrus_communis pycom05g14940
rosa_chinensis RchiOBHm_Chr6g0282621
rosa_laevigata RLG00000012881
rosa_multiflora Rmu_co8059372.1_g000001 Rmu_sc0000283.1_g000001 Rmu_sc0005697.1_g000001
rosa_roxburghii Rroxscaffold_7G00186220
rosa_rugosa Rorug06G0148000
rosa_samantha Rh6AG261200 Rh6BG264400 Rh6CG263500 Rh6DG255500
rosa_wichuraiana Rw6G022590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 156
AccB7I CCANNNNNTGG 3 cut(s) 250, 433, 462
AccBSI CCGCTC 1 cut(s) 21
AccII CGCG 4 cut(s) 146, 171, 325, 443
AclWI GGATC 2 cut(s) 63, 439
AcoI YGGCCR 2 cut(s) 160, 190
AcuI CTGAAG 1 cut(s) 371
AcyI GRCGYC 1 cut(s) 153
AfaI GTAC 2 cut(s) 344, 359
AfiI CCNNNNNNNGG 4 cut(s) 250, 253, 433, 462
AjnI CCWGG 2 cut(s) 249, 389
AluBI AGCT 3 cut(s) 139, 316, 424
AluI AGCT 3 cut(s) 139, 316, 424
Alw21I GWGCWC 1 cut(s) 426
Alw26I GTCTC 1 cut(s) 124
AlwI GGATC 2 cut(s) 63, 439
Ama87I CYCGRG 1 cut(s) 449
AoxI GGCC 5 cut(s) 160, 190, 223, 264, 453
ApeKI GCWGC 1 cut(s) 316
Asp700I GAANNNNTTC 1 cut(s) 140
AspLEI GCGC 1 cut(s) 171
AspS9I GGNCC 1 cut(s) 327
AsuHPI GGTGA 1 cut(s) 406
AvaI CYCGRG 1 cut(s) 449
AvaII GGWCC 1 cut(s) 327
BanII GRGCYC 1 cut(s) 426
BauI CACGAG 1 cut(s) 131
Bbv12I GWGCWC 1 cut(s) 426
BbvI GCAGC 1 cut(s) 303
BccI CCATC 2 cut(s) 49, 152
BceAI ACGGC 2 cut(s) 238, 445
BciT130I CCWGG 2 cut(s) 251, 391
BcoDI GTCTC 1 cut(s) 124
BfaI CTAG 2 cut(s) 363, 369
BisI GCNGC 5 cut(s) 84, 87, 317, 320, 323
BlsI GCNGC 5 cut(s) 85, 88, 318, 321, 324
BmcAI AGTACT 1 cut(s) 344
Bme1390I CCNGG 2 cut(s) 251, 391
Bme18I GGWCC 1 cut(s) 327
BmeT110I CYCGRG 1 cut(s) 449
BmgT120I GGNCC 1 cut(s) 327
BmrFI CCNGG 2 cut(s) 251, 391
BmsI GCATC 1 cut(s) 389
BplI GAGNNNNNCTC 2 cut(s) 254, 286
BpmI CTGGAG 3 cut(s) 49, 272, 373
Bpu10I CCTNAGC 1 cut(s) 297
BsaHI GRCGYC 1 cut(s) 153
BsaJI CCNNGG 4 cut(s) 323, 427, 450, 461
BsaXI ACNNNNNCTCC 4 cut(s) 224, 254, 371, 401
Bsc4I CCNNNNNNNGG 4 cut(s) 250, 253, 433, 462
Bse118I RCCGGY 1 cut(s) 188
BseBI CCWGG 2 cut(s) 251, 391
BseDI CCNNGG 4 cut(s) 323, 427, 450, 461
BseGI GGATG 2 cut(s) 41, 404
BseLI CCNNNNNNNGG 4 cut(s) 250, 253, 433, 462
BseMII CTCAG 1 cut(s) 311
BseRI GAGGAG 2 cut(s) 191, 353
BseXI GCAGC 1 cut(s) 303
Bsh1236I CGCG 4 cut(s) 146, 171, 325, 443
Bsh1285I CGRYCG 2 cut(s) 127, 150
BshFI GGCC 5 cut(s) 162, 192, 225, 266, 455
BsiEI CGRYCG 2 cut(s) 127, 150
BsiHKAI GWGCWC 1 cut(s) 426
BsiHKCI CYCGRG 1 cut(s) 449
BsiSI CCGG 2 cut(s) 163, 189
BslFI GGGAC 1 cut(s) 40
BslI CCNNNNNNNGG 4 cut(s) 250, 253, 433, 462
BsmAI GTCTC 1 cut(s) 124
BsmFI GGGAC 1 cut(s) 40
BsnI GGCC 5 cut(s) 162, 192, 225, 266, 455
BsoBI CYCGRG 1 cut(s) 449
Bsp1286I GDGCHC 1 cut(s) 426
Bsp143I GATC 5 cut(s) 68, 147, 228, 405, 444
Bsp68I TCGCGA 2 cut(s) 146, 443
BspANI GGCC 5 cut(s) 162, 192, 225, 266, 455
BspCNI CTCAG 1 cut(s) 310
BspFNI CGCG 4 cut(s) 146, 171, 325, 443
BspPI GGATC 2 cut(s) 63, 439
BspQI GCTCTTC 1 cut(s) 146
BsrBI CCGCTC 1 cut(s) 21
BsrFI RCCGGY 1 cut(s) 188
BssAI RCCGGY 1 cut(s) 188
BssECI CCNNGG 4 cut(s) 323, 427, 450, 461
BssMI GATC 5 cut(s) 68, 147, 228, 405, 444
BssNI GRCGYC 1 cut(s) 153
BssSI CACGAG 1 cut(s) 131
BssT1I CCWWGG 1 cut(s) 427
Bst2BI CACGAG 1 cut(s) 131
Bst2UI CCWGG 2 cut(s) 251, 391
Bst6I CTCTTC 1 cut(s) 146
BstACI GRCGYC 1 cut(s) 153
BstC8I GCNNGC 2 cut(s) 190, 268
BstDEI CTNAG 1 cut(s) 297
BstDSI CCRYGG 2 cut(s) 323, 461
BstF5I GGATG 2 cut(s) 41, 404
BstFNI CGCG 4 cut(s) 146, 171, 325, 443
BstHHI GCGC 1 cut(s) 171
BstKTI GATC 5 cut(s) 71, 150, 231, 408, 447
BstMAI GTCTC 1 cut(s) 124
BstMBI GATC 5 cut(s) 68, 147, 228, 405, 444
BstMCI CGRYCG 2 cut(s) 127, 150
BstMWI GCNNNNNNNGC 4 cut(s) 83, 168, 322, 391
BstNI CCWGG 2 cut(s) 251, 391
BstSCI CCNGG 2 cut(s) 249, 389
BstUI CGCG 4 cut(s) 146, 171, 325, 443
BstV1I GCAGC 1 cut(s) 303
BstX2I RGATCY 1 cut(s) 68
BstYI RGATCY 1 cut(s) 68
BsuRI GGCC 5 cut(s) 162, 192, 225, 266, 455
BtgI CCRYGG 2 cut(s) 323, 461
BtgZI GCGATG 2 cut(s) 20, 277
BtsCI GGATG 2 cut(s) 41, 404
BtuMI TCGCGA 2 cut(s) 146, 443
Cac8I GCNNGC 2 cut(s) 190, 268
CfoI GCGC 1 cut(s) 171
Cfr10I RCCGGY 1 cut(s) 188
Cfr13I GGNCC 1 cut(s) 327
Cfr42I CCGCGG 1 cut(s) 326
Csp6I GTAC 2 cut(s) 343, 358
CviQI GTAC 2 cut(s) 343, 358
DdeI CTNAG 1 cut(s) 297
DpnI GATC 5 cut(s) 70, 149, 230, 407, 446
DpnII GATC 5 cut(s) 68, 147, 228, 405, 444
EaeI YGGCCR 2 cut(s) 160, 190
Eam1104I CTCTTC 1 cut(s) 146
EarI CTCTTC 1 cut(s) 146
EciI GGCGGA 1 cut(s) 64
Ecl136II GAGCTC 1 cut(s) 424
Eco130I CCWWGG 1 cut(s) 427
Eco147I AGGCCT 1 cut(s) 266
Eco24I GRGCYC 1 cut(s) 426
Eco47I GGWCC 1 cut(s) 327
Eco53kI GAGCTC 1 cut(s) 424
Eco57I CTGAAG 1 cut(s) 371
Eco88I CYCGRG 1 cut(s) 449
EcoICRI GAGCTC 1 cut(s) 424
EcoRII CCWGG 2 cut(s) 249, 389
EcoT14I CCWWGG 1 cut(s) 427
EcoT38I GRGCYC 1 cut(s) 426
ErhI CCWWGG 1 cut(s) 427
FaiI YATR 1 cut(s) 434
FaqI GGGAC 1 cut(s) 40
FauI CCCGC 1 cut(s) 244
Fnu4HI GCNGC 5 cut(s) 84, 87, 317, 320, 323
FokI GGATG 2 cut(s) 28, 411
FriOI GRGCYC 1 cut(s) 426
Fsp4HI GCNGC 5 cut(s) 84, 87, 317, 320, 323
FspBI CTAG 2 cut(s) 363, 369
GlaI GCGC 1 cut(s) 170
GluI GCNGC 5 cut(s) 84, 87, 317, 320, 323
GsuI CTGGAG 3 cut(s) 49, 272, 373
HaeIII GGCC 5 cut(s) 162, 192, 225, 266, 455
HapII CCGG 2 cut(s) 163, 189
HhaI GCGC 1 cut(s) 171
Hin1I GRCGYC 1 cut(s) 153
Hin6I GCGC 1 cut(s) 169
HinP1I GCGC 1 cut(s) 169
HincII GTYRAC 1 cut(s) 289
HindII GTYRAC 1 cut(s) 289
HinfI GANTC 1 cut(s) 183
HpaII CCGG 2 cut(s) 163, 189
HphI GGTGA 1 cut(s) 406
Hpy166II GTNNAC 1 cut(s) 289
Hpy188I TCNGA 4 cut(s) 124, 182, 277, 398
Hpy188III TCNNGA 5 cut(s) 66, 133, 145, 299, 442
Hpy8I GTNNAC 1 cut(s) 289
Hpy99I CGWCG 5 cut(s) 155, 158, 277, 338, 443
HpyCH4IV ACGT 1 cut(s) 153
HpyF10VI GCNNNNNNNGC 4 cut(s) 83, 168, 322, 391
HpyF3I CTNAG 1 cut(s) 297
HpySE526I ACGT 1 cut(s) 153
Hsp92I GRCGYC 1 cut(s) 153
HspAI GCGC 1 cut(s) 169
KroI GCCGGC 1 cut(s) 188
KroNI GCCGGC 1 cut(s) 190
KspI CCGCGG 1 cut(s) 326
Kzo9I GATC 5 cut(s) 68, 147, 228, 405, 444
LguI GCTCTTC 1 cut(s) 146
LmnI GCTCC 2 cut(s) 26, 429
Lsp1109I GCAGC 1 cut(s) 303
LweI GCATC 1 cut(s) 389
MaeI CTAG 2 cut(s) 363, 369
MaeII ACGT 1 cut(s) 153
MalI GATC 5 cut(s) 70, 149, 230, 407, 446
MbiI CCGCTC 1 cut(s) 21
MboI GATC 5 cut(s) 68, 147, 228, 405, 444
MboII GAAGA 2 cut(s) 133, 364
MflI RGATCY 1 cut(s) 68
MhlI GDGCHC 1 cut(s) 426
MlyI GAGTC 1 cut(s) 177
MmeI TCCRAC 3 cut(s) 147, 160, 255
MroNI GCCGGC 1 cut(s) 188
MroXI GAANNNNTTC 1 cut(s) 140
MspA1I CMGCKG 1 cut(s) 325
MspI CCGG 2 cut(s) 163, 189
MspR9I CCNGG 2 cut(s) 251, 391
MvaI CCWGG 2 cut(s) 251, 391
MvnI CGCG 4 cut(s) 146, 171, 325, 443
MwoI GCNNNNNNNGC 4 cut(s) 83, 168, 322, 391
NaeI GCCGGC 1 cut(s) 190
NdeII GATC 5 cut(s) 68, 147, 228, 405, 444
NgoMIV GCCGGC 1 cut(s) 188
NruI TCGCGA 2 cut(s) 146, 443
PceI AGGCCT 1 cut(s) 266
PciSI GCTCTTC 1 cut(s) 146
PcsI WCGNNNNNNNCGW 4 cut(s) 150, 228, 414, 447
PdiI GCCGGC 1 cut(s) 190
PdmI GAANNNNTTC 1 cut(s) 140
PflMI CCANNNNNTGG 3 cut(s) 250, 433, 462
PkrI GCNGC 5 cut(s) 85, 88, 318, 321, 324
Ple19I CGATCG 1 cut(s) 150
PleI GAGTC 1 cut(s) 177
PpsI GAGTC 1 cut(s) 177
Psp124BI GAGCTC 1 cut(s) 426
Psp6I CCWGG 2 cut(s) 249, 389
PspGI CCWGG 2 cut(s) 249, 389
PspPI GGNCC 1 cut(s) 327
PsuI RGATCY 1 cut(s) 68
PvuI CGATCG 1 cut(s) 150
RruI TCGCGA 2 cut(s) 146, 443
RsaI GTAC 2 cut(s) 344, 359
RsaNI GTAC 2 cut(s) 343, 358
SacI GAGCTC 1 cut(s) 426
SacII CCGCGG 1 cut(s) 326
SapI GCTCTTC 1 cut(s) 146
SatI GCNGC 5 cut(s) 84, 87, 317, 320, 323
Sau3AI GATC 5 cut(s) 68, 147, 228, 405, 444
Sau96I GGNCC 1 cut(s) 327
ScaI AGTACT 1 cut(s) 344
SchI GAGTC 1 cut(s) 177
ScrFI CCNGG 2 cut(s) 251, 391
SduI GDGCHC 1 cut(s) 426
SetI ASST 9 cut(s) 14, 104, 141, 156, 288, 318, 332, 426, 433
SfaNI GCATC 1 cut(s) 389
Sfr303I CCGCGG 1 cut(s) 326
SgrBI CCGCGG 1 cut(s) 326
SinI GGWCC 1 cut(s) 327
SseBI AGGCCT 1 cut(s) 266
SspMI CTAG 2 cut(s) 363, 369
SstI GAGCTC 1 cut(s) 426
StuI AGGCCT 1 cut(s) 266
StyD4I CCNGG 2 cut(s) 249, 389
StyI CCWWGG 1 cut(s) 427
TaiI ACGT 1 cut(s) 156
TaqI TCGA 5 cut(s) 150, 156, 231, 261, 309
TatI WGTACW 1 cut(s) 342
TauI GCSGC 4 cut(s) 86, 89, 322, 325
TseI GCWGC 1 cut(s) 316
TspGWI ACGGA 1 cut(s) 462
Van91I CCANNNNNTGG 3 cut(s) 250, 433, 462
VpaK11BI GGWCC 1 cut(s) 327
XmnI GAANNNNTTC 1 cut(s) 140
XspI CTAG 2 cut(s) 363, 369
ZraI GACGTC 1 cut(s) 154
ZrmI AGTACT 1 cut(s) 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.